| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | attgcag | 7 | ||
| MIMAT0032503 | ssa-miR-20a-1-3p | 8 | ....... | 2 | 100 |
| MIMAT0029571 | ipu-miR-7572 | 2 | ....... | 8 | 100 |
| MIMAT0028483 | mdo-miR-7258-3p | 7 | ....... | 1 | 100 |
| MIMAT0023395 | hco-miR-5921-5p | 7 | ....... | 1 | 100 |
| MIMAT0012367 | dps-miR-2553-3p | 2 | ....... | 8 | 100 |
| MIMAT0007729 | gga-miR-1811 | 2 | ....... | 8 | 100 |
| MIMAT0006850 | oan-miR-106-3p | 8 | ....... | 2 | 100 |
| MIMAT0026696 | mdo-miR-191-3p | 8 | ....... | 2 | 100 |
| MIMAT0026604 | mml-miR-106a-3p | 8 | ....... | 2 | 100 |
| MIMAT0031939 | dre-miR-20b-3p | 8 | ....... | 2 | 100 |
| MIMAT0004517 | hsa-miR-106a-3p | 7 | ....... | 1 | 100 |
| MIMAT0037026 | ssc-miR-9808-3p | 3 | _...... | 8 | 85 |
| MIMAT0036598 | tch-miR-1301 | 1 | _...... | 6 | 85 |
| MIMAT0036458 | ptr-miR-1283b | 6 | _...... | 1 | 85 |
| MIMAT0036454 | ptr-miR-518g-5p | 6 | _...... | 1 | 85 |
| MIMAT0036431 | ggo-miR-1283 | 6 | _...... | 1 | 85 |
| MIMAT0035907 | chi-miR-106a-3p | 8 | _...... | 3 | 85 |
| MIMAT0035803 | tae-miR5048-5p | 2 | _...... | 7 | 85 |
| MIMAT0035775 | tae-miR9664-3p | 1 | _...... | 6 | 85 |
| MIMAT0035235 | hbr-miR9386 | 2 | _...... | 7 | 85 |
| MIMAT0035211 | dme-miR-9374-5p | 8 | ......_ | 3 | 85 |
| MIMAT0034962 | efu-miR-9186n | 2 | _...... | 7 | 85 |
| MIMAT0034730 | eca-miR-9154 | 2 | _...... | 7 | 85 |
| MIMAT0034624 | eca-miR-9079 | 3 | _...... | 8 | 85 |
| MIMAT0034393 | cfa-miR-6516 | 2 | _...... | 7 | 85 |
| MIMAT0034337 | cfa-miR-1301 | 1 | _...... | 6 | 85 |
| MIMAT0033212 | ppc-miR-8334-5p | 8 | ......_ | 3 | 85 |
| MIMAT0032715 | ssa-miR-93a-2-3p | 7 | _...... | 2 | 85 |
| MIMAT0032714 | ssa-miR-93a-3p | 7 | _...... | 2 | 85 |
| MIMAT0032668 | ssa-miR-722-3p | 2 | _...... | 7 | 85 |
| MIMAT0030485 | prd-miR-7870-3p | 8 | ......_ | 3 | 85 |
| MIMAT0030443 | bta-miR-6516 | 2 | _...... | 7 | 85 |
| MIMAT0030417 | hsa-miR-6516-5p | 2 | _...... | 7 | 85 |
| MIMAT0030050 | oar-miR-25 | 1 | ......_ | 6 | 85 |
| MIMAT0032237 | lva-miR-4854-3p | 3 | _...... | 8 | 85 |
| MIMAT0029593 | cbr-miR-7583c-5p | 8 | _...... | 3 | 85 |
| MIMAT0029092 | gga-miR-7469-5p | 8 | ......_ | 3 | 85 |
| MIMAT0025771 | gga-miR-6669-3p | 1 | _...... | 6 | 85 |
| MIMAT0027343 | mmu-miR-6516-5p | 2 | _...... | 7 | 85 |
| MIMAT0025174 | mmu-miR-6418-3p | 7 | _...... | 2 | 85 |
| MIMAT0024158 | ggo-miR-1301 | 1 | _...... | 6 | 85 |
| MIMAT0023962 | cgr-miR-450b-5p | 3 | _...... | 8 | 85 |
| MIMAT0023365 | hco-miR-5909 | 7 | _...... | 2 | 85 |
| MIMAT0023258 | osa-miR5791 | 1 | _...... | 6 | 85 |
| MIMAT0022814 | sha-miR-130b | 8 | ......_ | 3 | 85 |
| MIMAT0022596 | ola-miR-187 | 8 | _...... | 3 | 85 |
| MIMAT0021587 | asu-miR-5362-3p | 1 | ......_ | 6 | 85 |
| MIMAT0021242 | mtr-miR5246 | 1 | _...... | 6 | 85 |
| MIMAT0020541 | hsa-miR-5047 | 1 | _...... | 6 | 85 |
| MIMAT0020077 | spu-miR-4854 | 3 | _...... | 8 | 85 |
| MIMAT0020009 | sko-miR-4818a | 1 | ......_ | 6 | 85 |
| MIMAT0019927 | hsa-miR-4772-3p | 7 | _...... | 2 | 85 |
| MIMAT0018439 | nlo-miR-92a | 1 | ......_ | 6 | 85 |
| MIMAT0018407 | ngi-miR-92a | 1 | ......_ | 6 | 85 |
| MIMAT0018895 | tca-miR-3896-3p | 8 | _...... | 3 | 85 |
| MIMAT0016677 | cin-miR-4096-3p | 6 | ......_ | 1 | 85 |
| MIMAT0016271 | sja-miR-310 | 3 | ......_ | 8 | 85 |
| MIMAT0016221 | ppy-miR-1301 | 1 | _...... | 6 | 85 |
| MIMAT0016205 | ppy-miR-1283b | 7 | _...... | 2 | 85 |
| MIMAT0015986 | ppy-miR-527 | 6 | _...... | 1 | 85 |
| MIMAT0015951 | ppy-miR-518a-5p | 6 | _...... | 1 | 85 |
| MIMAT0015668 | nvi-miR-92a | 1 | ......_ | 6 | 85 |
| MIMAT0015606 | bmo-miR-3402 | 6 | ......_ | 1 | 85 |
| MIMAT0015443 | bmo-miR-3259 | 6 | ......_ | 1 | 85 |
| MIMAT0014399 | cqu-miR-92 | 1 | ......_ | 6 | 85 |
| MIMAT0013070 | eca-miR-1301 | 1 | _...... | 6 | 85 |
| MIMAT0013571 | cte-miR-2705 | 7 | _...... | 2 | 85 |
| MIMAT0011775 | hsa-miR-2276-3p | 7 | _...... | 2 | 85 |
| MIMAT0009958 | bta-miR-1301 | 1 | _...... | 6 | 85 |
| MIMAT0009522 | cte-miR-92c | 1 | ......_ | 6 | 85 |
| MIMAT0009299 | bta-miR-367 | 3 | ......_ | 8 | 85 |
| MIMAT0008368 | tca-miR-92b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0008367 | tca-miR-92a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0008212 | ptr-miR-527 | 6 | _...... | 1 | 85 |
| MIMAT0007594 | gga-miR-1702 | 1 | ......_ | 6 | 85 |
| MIMAT0007300 | oan-miR-1421ab-2-3p | 6 | ......_ | 1 | 85 |
| MIMAT0007252 | oan-miR-1421ab-3p | 6 | ......_ | 1 | 85 |
| MIMAT0007136 | oan-miR-1384 | 6 | ......_ | 1 | 85 |
| MIMAT0020875 | dme-miR-978-5p | 6 | ......_ | 1 | 85 |
| MIMAT0004435 | ame-miR-92a | 1 | ......_ | 6 | 85 |
| MIMAT0004184 | mdo-miR-367 | 3 | ......_ | 8 | 85 |
| MIMAT0003855 | bta-miR-363 | 1 | ......_ | 6 | 85 |
| MIMAT0003904 | ppt-miR1215 | 3 | ......_ | 8 | 85 |
| MIMAT0003511 | mmu-miR-450b-5p | 3 | _...... | 8 | 85 |
| MIMAT0005797 | hsa-miR-1301-3p | 1 | _...... | 6 | 85 |
| MIMAT0002862 | hsa-miR-527 | 6 | _...... | 1 | 85 |
| MIMAT0005457 | hsa-miR-518a-5p | 6 | _...... | 1 | 85 |
| MIMAT0031983 | dre-miR-196a-3p | 6 | _...... | 1 | 85 |
