| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | attttatt | 8 | ||
| MIMAT0033707 | pxy-miR-8497 | 8 | ......._ | 2 | 87 |
| MIMAT0030907 | stu-miR8011a-3p | 7 | _....... | 1 | 87 |
| MIMAT0030406 | ptc-miR7834 | 8 | _....... | 2 | 87 |
| MIMAT0021073 | gma-miR4372b | 8 | _....... | 2 | 87 |
| MIMAT0020204 | dme-miR-4974-3p | 8 | ......._ | 2 | 87 |
| MIMAT0020151 | dme-miR-4943-5p | 1 | _....... | 7 | 87 |
| MIMAT0018844 | tca-miR-3876-5p | 2 | _....... | 8 | 87 |
| MIMAT0015037 | hsa-miR-3163 | 8 | ......._ | 2 | 87 |
| MIMAT0012606 | bmo-miR-2729 | 1 | ......._ | 7 | 87 |
| MIMAT0011415 | sme-miR-754b-3p | 2 | ......._ | 8 | 87 |
| MIMAT0009801 | nve-miR-2039-3p | 7 | ......._ | 1 | 87 |
| MIMAT0025398 | tgu-miR-1460 | 1 | .a...... | 8 | 87 |
| MIMAT0022300 | hsa-miR-5590-3p | 8 | .c...... | 1 | 87 |
| MIMAT0007338 | gga-miR-1460 | 1 | .a...... | 8 | 87 |
| MIMAT0037019 | ssc-miR-9801-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035800 | tae-miR7757-5p | 6 | _......_ | 1 | 75 |
| MIMAT0035281 | gsa-miR-2001-3p | 3 | _......_ | 8 | 75 |
| MIMAT0034129 | gra-miR8729 | 7 | ......__ | 2 | 75 |
| MIMAT0034094 | gra-miR8707 | 6 | _......_ | 1 | 75 |
| MIMAT0033832 | atr-miR8617 | 3 | ......__ | 8 | 75 |
| MIMAT0033797 | pxy-miR-8539-3p | 3 | __...... | 8 | 75 |
| MIMAT0033574 | sma-miR-8435-5p | 6 | ......__ | 1 | 75 |
| MIMAT0033028 | ppc-miR-8364k-5p | 3 | __...... | 8 | 75 |
| MIMAT0031764 | hbv-miR-B3RC-5p | 7 | __...... | 2 | 75 |
| MIMAT0030905 | stu-miR1886h | 1 | ......__ | 6 | 75 |
| MIMAT0030878 | stu-miR7993d | 3 | ......__ | 8 | 75 |
| MIMAT0030877 | stu-miR7993c | 3 | ......__ | 8 | 75 |
| MIMAT0030876 | stu-miR7993b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0030875 | stu-miR7993a | 3 | ......__ | 8 | 75 |
| MIMAT0030779 | prd-miR-7952-3p | 8 | __...... | 3 | 75 |
| MIMAT0030732 | prd-miR-7937-5p | 3 | _......_ | 8 | 75 |
| MIMAT0030278 | bdi-miR7765-5p | 2 | ......__ | 7 | 75 |
| MIMAT0029913 | mml-miR-5697-3p | 2 | _......_ | 7 | 75 |
| MIMAT0028847 | mdo-miR-7386j-3p | 6 | __...... | 1 | 75 |
| MIMAT0028549 | mdo-miR-7286-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028270 | mml-miR-7168-5p | 2 | ......__ | 7 | 75 |
| MIMAT0023912 | cgr-miR-325-3p | 1 | __...... | 6 | 75 |
| MIMAT0022344 | cin-miR-5608-3p | 1 | _......_ | 6 | 75 |
| MIMAT0022343 | cin-miR-5608-5p | 1 | _......_ | 6 | 75 |
| MIMAT0022018 | aca-miR-5405-5p | 3 | _......_ | 8 | 75 |
| MIMAT0020168 | dme-miR-4953-3p | 3 | _......_ | 8 | 75 |
| MIMAT0018276 | gma-miR4352b | 6 | ......__ | 1 | 75 |
| MIMAT0018275 | gma-miR4372a | 6 | ......__ | 1 | 75 |
| MIMAT0018674 | tca-miR-3824-5p | 8 | ......__ | 3 | 75 |
| MIMAT0016912 | hsa-miR-4282 | 6 | ......__ | 1 | 75 |
| MIMAT0017939 | aly-miR4248c | 3 | ......__ | 8 | 75 |
| MIMAT0017938 | aly-miR4248b | 3 | ......__ | 8 | 75 |
| MIMAT0017937 | aly-miR4248a | 3 | ......__ | 8 | 75 |
| MIMAT0016791 | cin-miR-4179a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0016693 | cin-miR-4106-3p | 6 | ......__ | 1 | 75 |
| MIMAT0016033 | ppy-miR-590-3p | 3 | ......__ | 8 | 75 |
| MIMAT0017648 | aly-miR859-3p | 3 | ......__ | 8 | 75 |
| MIMAT0015559 | bmo-miR-3372-5p | 1 | __...... | 6 | 75 |
| MIMAT0015506 | bmo-miR-3318 | 3 | ......__ | 8 | 75 |
| MIMAT0014062 | osa-miR2931 | 2 | __...... | 7 | 75 |
| MIMAT0013821 | osa-miR2871b | 2 | ......__ | 7 | 75 |
| MIMAT0013820 | osa-miR2871a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0013059 | eca-miR-590-3p | 3 | ......__ | 8 | 75 |
| MIMAT0012615 | bmo-miR-2737 | 1 | _......_ | 6 | 75 |
| MIMAT0013505 | mtr-miR2677 | 1 | __...... | 6 | 75 |
| MIMAT0013400 | mtr-miR2634 | 1 | __...... | 6 | 75 |
| MIMAT0012499 | dsi-miR-1013 | 6 | _......_ | 1 | 75 |
| MIMAT0012023 | bta-miR-2446 | 6 | ......__ | 1 | 75 |
| MIMAT0011592 | crm-miR-64c-3p | 7 | _......_ | 2 | 75 |
| MIMAT0011414 | sme-miR-754c-1-3p | 1 | _......_ | 6 | 75 |
| MIMAT0015286 | osa-miR1320-3p | 8 | ......__ | 3 | 75 |
| MIMAT0032058 | dvi-miR-7-3p | 7 | __...... | 2 | 75 |
| MIMAT0008261 | ptr-miR-590 | 3 | ......__ | 8 | 75 |
| MIMAT0006700 | cfa-miR-590 | 3 | ......__ | 8 | 75 |
| MIMAT0006451 | mml-miR-590-3p | 3 | ......__ | 8 | 75 |
| MIMAT0026811 | mml-miR-95-5p | 8 | __...... | 3 | 75 |
| MIMAT0007396 | gma-miR1533 | 8 | __...... | 3 | 75 |
| MIMAT0007383 | gma-miR1522 | 1 | __...... | 6 | 75 |
| MIMAT0005026 | dme-miR-1013-3p | 6 | _......_ | 1 | 75 |
| MIMAT0004896 | mmu-miR-590-3p | 3 | ......__ | 8 | 75 |
| MIMAT0003771 | dre-miR-740 | 6 | _......_ | 1 | 75 |
| MIMAT0004801 | hsa-miR-590-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004640 | mmu-miR-325-3p | 1 | __...... | 6 | 75 |
| MIMAT0004639 | rno-miR-325-3p | 1 | __...... | 6 | 75 |
| MIMAT0020790 | dme-miR-7-3p | 7 | __...... | 2 | 75 |
| MIMAT0026473 | hsa-miR-95-5p | 8 | __...... | 3 | 75 |
