| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | attttct | 7 | ||
| MIMAT0035426 | nve-miR-9467 | 2 | ....... | 8 | 100 |
| MIMAT0034559 | eca-miR-9018 | 1 | ....... | 7 | 100 |
| MIMAT0030367 | hhi-miR-737 | 7 | ....... | 1 | 100 |
| MIMAT0030150 | bdi-miR7714-5p | 2 | ....... | 8 | 100 |
| MIMAT0023554 | ame-miR-6006-3p | 1 | ....... | 7 | 100 |
| MIMAT0006886 | oan-miR-1422b-3p | 7 | ....... | 1 | 100 |
| MIMAT0006880 | oan-miR-1422a-3p | 8 | ....... | 2 | 100 |
| MIMAT0001000 | ebv-miR-BART2-5p | 2 | ....... | 8 | 100 |
| MIMAT0036614 | tch-miR-9771o | 6 | _...... | 1 | 85 |
| MIMAT0036557 | tch-miR-9771j | 6 | _...... | 1 | 85 |
| MIMAT0035407 | nve-miR-9446 | 3 | _...... | 8 | 85 |
| MIMAT0034629 | eca-miR-9084 | 3 | _...... | 8 | 85 |
| MIMAT0034241 | gra-miR8787 | 1 | _...... | 6 | 85 |
| MIMAT0033899 | atr-miR8608 | 1 | _...... | 6 | 85 |
| MIMAT0033872 | atr-miR8586 | 1 | _...... | 6 | 85 |
| MIMAT0033550 | sma-miR-8423-5p | 1 | _...... | 6 | 85 |
| MIMAT0033517 | sma-miR-8406-3p | 1 | _...... | 6 | 85 |
| MIMAT0031377 | osa-miR5539b | 7 | _...... | 2 | 85 |
| MIMAT0030918 | stu-miR7990b | 3 | ......_ | 8 | 85 |
| MIMAT0031200 | stu-miR8001b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030153 | bdi-miR7715-3p | 8 | _...... | 3 | 85 |
| MIMAT0029360 | lja-miR7535 | 8 | ......_ | 3 | 85 |
| MIMAT0029155 | ghr-miR7508 | 8 | _...... | 3 | 85 |
| MIMAT0028927 | mdo-miR-7398u-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028755 | mdo-miR-1544d-3p | 3 | _...... | 8 | 85 |
| MIMAT0031034 | mdo-miR-1544e-3p | 3 | _...... | 8 | 85 |
| MIMAT0028747 | mdo-miR-1544c-3p | 3 | _...... | 8 | 85 |
| MIMAT0028745 | mdo-miR-1544b-3p | 3 | _...... | 8 | 85 |
| MIMAT0028396 | mmu-miR-7214-5p | 3 | _...... | 8 | 85 |
| MIMAT0026435 | sbi-miR6229-3p | 3 | _...... | 8 | 85 |
| MIMAT0025025 | sma-miR-124a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027320 | ppe-miR6288a | 6 | ......_ | 1 | 85 |
| MIMAT0027275 | ppe-miR6259 | 7 | _...... | 2 | 85 |
| MIMAT0024777 | nta-miR6162 | 6 | _...... | 1 | 85 |
| MIMAT0027258 | pgi-miR6137b | 8 | ......_ | 3 | 85 |
| MIMAT0027257 | pgi-miR6137a | 8 | ......_ | 3 | 85 |
| MIMAT0023111 | tur-miR-5738-3p | 1 | _...... | 6 | 85 |
| MIMAT0022175 | osa-miR5539a | 7 | _...... | 2 | 85 |
| MIMAT0022159 | osa-miR5524 | 8 | ......_ | 3 | 85 |
| MIMAT0021622 | gma-miR5380b | 6 | ......_ | 1 | 85 |
| MIMAT0021621 | gma-miR5380a | 6 | ......_ | 1 | 85 |
| MIMAT0021620 | gma-miR5379 | 8 | ......_ | 3 | 85 |
| MIMAT0021603 | gma-miR5369 | 8 | _...... | 3 | 85 |
| MIMAT0020155 | dme-miR-4945-5p | 1 | _...... | 6 | 85 |
| MIMAT0019746 | hsa-miR-4668-3p | 6 | ......_ | 1 | 85 |
| MIMAT0019578 | pma-miR-4547-5p | 3 | _...... | 8 | 85 |
| MIMAT0018308 | gma-miR4393a | 8 | _...... | 3 | 85 |
| MIMAT0018678 | tca-miR-3825-5p | 3 | _...... | 8 | 85 |
| MIMAT0018671 | tca-miR-3822-3p | 3 | ......_ | 8 | 85 |
| MIMAT0018539 | ame-miR-3765 | 8 | _...... | 3 | 85 |
| MIMAT0018083 | hsa-miR-3662 | 6 | ......_ | 1 | 85 |
| MIMAT0017945 | ath-miR3440b-5p | 1 | _...... | 6 | 85 |
| MIMAT0016832 | cin-miR-4211-5p | 8 | _...... | 3 | 85 |
| MIMAT0016558 | cin-miR-4034-3p | 2 | _...... | 7 | 85 |
| MIMAT0016262 | sja-miR-124-5p | 3 | ......_ | 8 | 85 |
| MIMAT0017622 | aly-miR838-3p | 1 | _...... | 6 | 85 |
| MIMAT0012865 | hvt-miR-H13 | 1 | _...... | 6 | 85 |
| MIMAT0013718 | bmo-miR-2810 | 3 | ......_ | 8 | 85 |
| MIMAT0011791 | dme-miR-2283-5p | 6 | ......_ | 1 | 85 |
| MIMAT0007793 | osa-miR1860-5p | 6 | _...... | 1 | 85 |
| MIMAT0026768 | mdo-miR-1544a-3p | 3 | _...... | 8 | 85 |
| MIMAT0005979 | mdv1-miR-M9-5p | 1 | _...... | 6 | 85 |
| MIMAT0007100 | oan-miR-1422m-3p | 8 | ......_ | 3 | 85 |
| MIMAT0006896 | oan-miR-1422k-3p | 6 | _...... | 1 | 85 |
| MIMAT0006892 | oan-miR-1422c-3p | 6 | _...... | 1 | 85 |
| MIMAT0026740 | hsa-miR-1250-3p | 3 | ......_ | 8 | 85 |
| MIMAT0004474 | mdv2-miR-M28-5p | 1 | _...... | 6 | 85 |
| MIMAT0004458 | mdv2-miR-M18-5p | 3 | _...... | 8 | 85 |
| MIMAT0004260 | ath-miR838 | 1 | _...... | 6 | 85 |
| MIMAT0003923 | mdv1-miR-M3-5p | 8 | ......_ | 3 | 85 |
| MIMAT0003474 | mmu-miR-694 | 8 | ......_ | 3 | 85 |
| MIMAT0026623 | hsa-miR-627-3p | 3 | _...... | 8 | 85 |
