| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | attttgt | 7 | ||
| MIMAT0034595 | eca-miR-9051 | 2 | ....... | 8 | 100 |
| MIMAT0033509 | sma-miR-8404-3p | 2 | ....... | 8 | 100 |
| MIMAT0026343 | bma-miR-5845 | 1 | ....... | 7 | 100 |
| MIMAT0021367 | mtr-miR5296 | 1 | ....... | 7 | 100 |
| MIMAT0020457 | bfl-miR-4875c-3p | 8 | ....... | 2 | 100 |
| MIMAT0004316 | ath-miR866-3p | 7 | ....... | 1 | 100 |
| MIMAT0036995 | tae-miR9781 | 1 | _...... | 6 | 85 |
| MIMAT0036000 | chi-miR-1814 | 2 | _...... | 7 | 85 |
| MIMAT0035970 | chi-miR-1468-3p | 8 | ......_ | 3 | 85 |
| MIMAT0035858 | bra-miR403-5p | 3 | _...... | 8 | 85 |
| MIMAT0035687 | bra-miR9564-5p | 6 | _...... | 1 | 85 |
| MIMAT0035464 | sly-miR9474-3p | 1 | _...... | 6 | 85 |
| MIMAT0035364 | bol-miR9409 | 1 | _...... | 6 | 85 |
| MIMAT0035180 | efu-miR-375 | 1 | _...... | 6 | 85 |
| MIMAT0034850 | efu-miR-9235b | 3 | ......_ | 8 | 85 |
| MIMAT0034742 | eca-miR-3613 | 6 | _...... | 1 | 85 |
| MIMAT0034261 | gra-miR8718 | 1 | ......_ | 6 | 85 |
| MIMAT0034200 | gra-miR8766 | 3 | ......_ | 8 | 85 |
| MIMAT0033688 | sma-miR-8483-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033540 | sma-miR-8418-5p | 3 | ......_ | 8 | 85 |
| MIMAT0033419 | str-miR-8381-3p | 1 | _...... | 6 | 85 |
| MIMAT0033237 | ppc-miR-8345-3p | 1 | _...... | 6 | 85 |
| MIMAT0031386 | aly-miR403b-5p | 3 | _...... | 8 | 85 |
| MIMAT0030831 | prd-miR-7965-3p | 1 | _...... | 6 | 85 |
| MIMAT0030515 | prd-miR-7879-3p | 1 | _...... | 6 | 85 |
| MIMAT0030258 | bdi-miR7757-5p.1 | 7 | _...... | 2 | 85 |
| MIMAT0030254 | bdi-miR7723b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0030104 | bdi-miR5174c-3p | 3 | ......_ | 8 | 85 |
| MIMAT0029948 | bta-miR-3613b | 8 | _...... | 3 | 85 |
| MIMAT0029550 | ipu-miR-7554 | 3 | ......_ | 8 | 85 |
| MIMAT0028323 | mml-miR-548i-3p | 6 | ......_ | 1 | 85 |
| MIMAT0024926 | gma-miR1515b | 3 | ......_ | 8 | 85 |
| MIMAT0023424 | hco-miR-5932 | 1 | ......_ | 6 | 85 |
| MIMAT0023394 | hco-miR-5920 | 2 | _...... | 7 | 85 |
| MIMAT0023380 | hco-miR-5897c | 1 | _...... | 6 | 85 |
| MIMAT0023364 | hco-miR-5897b | 1 | _...... | 6 | 85 |
| MIMAT0023341 | hco-miR-5897a | 1 | _...... | 6 | 85 |
| MIMAT0023173 | gma-miR5761b | 1 | _...... | 6 | 85 |
| MIMAT0023157 | gma-miR5761a | 1 | _...... | 6 | 85 |
| MIMAT0023135 | mtr-miR5753 | 1 | ......_ | 6 | 85 |
| MIMAT0023006 | bra-miR5711 | 3 | _...... | 8 | 85 |
| MIMAT0022350 | cin-miR-5611-3p | 6 | ......_ | 1 | 85 |
| MIMAT0022182 | cel-miR-5545-3p | 3 | _...... | 8 | 85 |
| MIMAT0021219 | mtr-miR5234 | 1 | _...... | 6 | 85 |
| MIMAT0027075 | bdi-miR827-5p | 1 | _...... | 6 | 85 |
| MIMAT0021044 | hsa-miR-5010-3p | 1 | _...... | 6 | 85 |
| MIMAT0019987 | cel-miR-4805-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017991 | hsa-miR-3613-3p | 6 | _...... | 1 | 85 |
| MIMAT0016710 | cin-miR-4119-5p | 3 | _...... | 8 | 85 |
| MIMAT0016692 | cin-miR-4105-5p | 6 | _...... | 1 | 85 |
| MIMAT0017644 | aly-miR857-3p | 1 | _...... | 6 | 85 |
| MIMAT0017585 | aly-miR403a-5p | 3 | _...... | 8 | 85 |
| MIMAT0015595 | bmo-miR-3391-3p | 8 | _...... | 3 | 85 |
| MIMAT0014774 | api-miR-3037 | 8 | _...... | 3 | 85 |
| MIMAT0016953 | rlcv-miR-rL1-29-3p | 1 | _...... | 6 | 85 |
| MIMAT0014054 | osa-miR2923 | 8 | _...... | 3 | 85 |
| MIMAT0012848 | rno-miR-294 | 8 | ......_ | 3 | 85 |
| MIMAT0012411 | dps-miR-2570-3p | 1 | _...... | 6 | 85 |
| MIMAT0012306 | dps-miR-2528 | 1 | _...... | 6 | 85 |
| MIMAT0012215 | dme-miR-2500-3p | 3 | ......_ | 8 | 85 |
| MIMAT0011984 | bta-miR-1814c | 2 | _...... | 7 | 85 |
| MIMAT0011854 | bta-miR-2325a | 2 | _...... | 7 | 85 |
| MIMAT0011822 | bta-miR-2310 | 2 | _...... | 7 | 85 |
| MIMAT0011801 | bta-miR-2293 | 3 | ......_ | 8 | 85 |
| MIMAT0009804 | nve-miR-2041a-5p | 1 | ......_ | 6 | 85 |
| MIMAT0009303 | bta-miR-375 | 1 | _...... | 6 | 85 |
| MIMAT0009052 | dya-miR-274 | 1 | _...... | 6 | 85 |
| MIMAT0009023 | dwi-miR-274 | 1 | _...... | 6 | 85 |
| MIMAT0008828 | dse-miR-274 | 1 | _...... | 6 | 85 |
| MIMAT0008758 | dpe-miR-274 | 1 | _...... | 6 | 85 |
| MIMAT0008521 | der-miR-274 | 1 | _...... | 6 | 85 |
| MIMAT0008448 | dan-miR-274 | 1 | _...... | 6 | 85 |
| MIMAT0007374 | gma-miR1515a | 3 | ......_ | 8 | 85 |
| MIMAT0004301 | ath-miR857 | 1 | _...... | 6 | 85 |
| MIMAT0004138 | mdo-miR-375 | 1 | _...... | 6 | 85 |
| MIMAT0003718 | ebv-miR-BART19-3p | 1 | _...... | 6 | 85 |
| MIMAT0003476 | mmu-miR-669b-5p | 3 | _...... | 8 | 85 |
| MIMAT0026638 | hsa-miR-1468-3p | 8 | ......_ | 3 | 85 |
| MIMAT0001237 | dps-miR-274 | 1 | _...... | 6 | 85 |
| MIMAT0031914 | ath-miR403-5p | 3 | _...... | 8 | 85 |
| MIMAT0000767 | cbr-lsy-6 | 1 | _...... | 6 | 85 |
| MIMAT0000749 | cel-lsy-6-3p | 1 | _...... | 6 | 85 |
