| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | caaattga | 8 | ||
| MIMAT0036384 | gma-miR9753 | 8 | ......._ | 2 | 87 |
| MIMAT0035572 | dvi-miR-929-5p | 1 | _....... | 7 | 87 |
| MIMAT0034108 | gra-miR8719 | 1 | ......._ | 7 | 87 |
| MIMAT0030253 | bdi-miR7755-3p | 7 | _....... | 1 | 87 |
| MIMAT0024992 | hme-miR-929 | 1 | _....... | 7 | 87 |
| MIMAT0014741 | api-miR-929 | 1 | _....... | 7 | 87 |
| MIMAT0012459 | dsi-miR-929-5p | 1 | _....... | 7 | 87 |
| MIMAT0012267 | dps-miR-929-5p | 1 | _....... | 7 | 87 |
| MIMAT0020892 | dme-miR-929-5p | 1 | _....... | 7 | 87 |
| MIMAT0037257 | ata-miR9674b-3p | 8 | ......c. | 1 | 87 |
| MIMAT0033697 | pxy-miR-8489a-3p | 1 | ......c. | 8 | 87 |
| MIMAT0032294 | ssa-miR-10a-2-3p | 1 | ......c. | 8 | 87 |
| MIMAT0031561 | ppe-miR6288b-3p | 8 | .t...... | 1 | 87 |
| MIMAT0017940 | aly-miR4249 | 8 | ......c. | 1 | 87 |
| MIMAT0016838 | cin-miR-4216-3p | 8 | ......t. | 1 | 87 |
| MIMAT0017633 | aly-miR845b-5p | 8 | .c...... | 1 | 87 |
| MIMAT0004246 | ath-miR829-3p.2 | 1 | ......a. | 8 | 87 |
| MIMAT0036900 | oha-miR-32-3p | 6 | _......_ | 1 | 75 |
| MIMAT0036663 | oha-miR-10b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0036661 | oha-miR-10a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0035912 | chi-miR-10a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0035705 | mse-miR-929b | 2 | __...... | 7 | 75 |
| MIMAT0035665 | bra-miR9556-5p | 7 | __...... | 2 | 75 |
| MIMAT0035637 | dvi-miR-9546-3p | 8 | ......__ | 3 | 75 |
| MIMAT0035573 | dvi-miR-932-5p | 6 | __...... | 1 | 75 |
| MIMAT0035344 | gsa-miR-9399-5p | 7 | _......_ | 2 | 75 |
| MIMAT0035271 | gsa-miR-96b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0034049 | gra-miR8678 | 6 | ......__ | 1 | 75 |
| MIMAT0033800 | pxy-miR-8541 | 2 | __...... | 7 | 75 |
| MIMAT0033710 | pxy-miR-8499b | 6 | _......_ | 1 | 75 |
| MIMAT0033577 | sma-miR-8436-3p | 6 | ......__ | 1 | 75 |
| MIMAT0033567 | sma-miR-8431-3p | 7 | ......__ | 2 | 75 |
| MIMAT0033292 | ppc-miR-8363-5p | 3 | _......_ | 8 | 75 |
| MIMAT0033274 | ppc-miR-8356a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0033144 | ppc-miR-8356b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032300 | ssa-miR-10d-3p | 1 | ......__ | 6 | 75 |
| MIMAT0032293 | ssa-miR-10a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0031573 | bbe-miR-10a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0030947 | stu-miR8037 | 8 | ......__ | 3 | 75 |
| MIMAT0031214 | stu-miR8033-3p | 6 | __...... | 1 | 75 |
| MIMAT0031204 | stu-miR7984d-3p | 6 | _......_ | 1 | 75 |
| MIMAT0030823 | prd-miR-7957c-3p | 8 | ......__ | 3 | 75 |
| MIMAT0030801 | prd-miR-7957d-3p | 7 | ......__ | 2 | 75 |
| MIMAT0030800 | prd-miR-7957d-5p | 6 | ......__ | 1 | 75 |
| MIMAT0030777 | prd-miR-7957a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0030669 | prd-miR-7957b-3p | 8 | ......__ | 3 | 75 |
| MIMAT0030668 | prd-miR-7957b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032247 | rgl-miR7805-5p | 7 | ......__ | 2 | 75 |
| MIMAT0030343 | hhi-miR-7796 | 3 | __...... | 8 | 75 |
| MIMAT0030104 | bdi-miR5174c-3p | 6 | _......_ | 1 | 75 |
| MIMAT0029662 | cbn-miR-7622 | 6 | __...... | 1 | 75 |
| MIMAT0029334 | lja-miR7519 | 1 | ......__ | 6 | 75 |
| MIMAT0026465 | sbi-miR5568g-5p | 1 | ......__ | 6 | 75 |
| MIMAT0026367 | bma-miR-5868 | 1 | __...... | 6 | 75 |
| MIMAT0028019 | mmu-miR-7057-3p | 7 | ......__ | 2 | 75 |
| MIMAT0025667 | gga-miR-6580-5p | 3 | __...... | 8 | 75 |
| MIMAT0025139 | mmu-miR-6390 | 2 | __...... | 7 | 75 |
| MIMAT0024995 | hme-miR-932 | 6 | __...... | 1 | 75 |
| MIMAT0024730 | nta-miR6025c | 6 | __...... | 1 | 75 |
| MIMAT0024730 | nta-miR6025c | 3 | __...... | 8 | 75 |
| MIMAT0027251 | pgi-miR6135j | 1 | __...... | 6 | 75 |
| MIMAT0027246 | pgi-miR6135e.2-5p | 1 | __...... | 6 | 75 |
| MIMAT0024454 | mse-miR-932 | 6 | __...... | 1 | 75 |
| MIMAT0024449 | mse-miR-10a | 1 | ......__ | 6 | 75 |
| MIMAT0023905 | cgr-miR-32-3p | 6 | _......_ | 1 | 75 |
| MIMAT0023736 | cgr-miR-10a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0023675 | ame-miR-6051 | 2 | _......_ | 7 | 75 |
| MIMAT0023332 | hco-miR-5893 | 3 | ......__ | 8 | 75 |
| MIMAT0022194 | cel-miR-5551-3p | 8 | _......_ | 3 | 75 |
| MIMAT0021933 | aca-miR-32-3p | 6 | _......_ | 1 | 75 |
| MIMAT0021722 | aca-miR-10c-3p | 2 | ......__ | 7 | 75 |
| MIMAT0021353 | mtr-miR5290 | 6 | ......__ | 1 | 75 |
| MIMAT0021307 | mtr-miR5272f | 2 | __...... | 7 | 75 |
| MIMAT0021306 | mtr-miR5272e | 2 | __...... | 7 | 75 |
| MIMAT0021305 | mtr-miR5272d | 2 | __...... | 7 | 75 |
| MIMAT0021304 | mtr-miR5272c | 2 | __...... | 7 | 75 |
| MIMAT0021303 | mtr-miR5272b | 2 | __...... | 7 | 75 |
| MIMAT0021302 | mtr-miR5272a | 2 | __...... | 7 | 75 |
| MIMAT0020581 | osa-miR5081 | 7 | ......__ | 2 | 75 |
| MIMAT0020571 | bdi-miR5064 | 8 | ......__ | 3 | 75 |
| MIMAT0021023 | hsa-miR-5002-5p | 6 | ......__ | 1 | 75 |
| MIMAT0018440 | nlo-miR-932 | 6 | __...... | 1 | 75 |
| MIMAT0018404 | ngi-miR-932 | 6 | __...... | 1 | 75 |
| MIMAT0018652 | tca-miR-3814-5p | 8 | _......_ | 3 | 75 |
| MIMAT0018016 | vvi-miR3626-3p | 8 | __...... | 3 | 75 |
| MIMAT0016783 | cin-miR-4174-3p | 2 | ......__ | 7 | 75 |
| MIMAT0016729 | cin-miR-4132-3p | 1 | _......_ | 6 | 75 |
| MIMAT0016460 | cin-miR-4001h-3p | 7 | __...... | 2 | 75 |
| MIMAT0015702 | nvi-miR-932 | 6 | __...... | 1 | 75 |
| MIMAT0017742 | ath-miR841b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0017702 | aly-miR3435-3p | 1 | __...... | 6 | 75 |
| MIMAT0015429 | bmo-miR-3247 | 3 | _......_ | 8 | 75 |
| MIMAT0014414 | cqu-miR-932-5p | 6 | __...... | 1 | 75 |
| MIMAT0014405 | cqu-miR-10-3p | 1 | ......__ | 6 | 75 |
| MIMAT0014269 | aae-miR-932-5p | 6 | __...... | 1 | 75 |
| MIMAT0022954 | ssc-miR-10a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0013723 | bmo-miR-2814 | 3 | ......__ | 8 | 75 |
| MIMAT0012568 | aqc-miR171c | 2 | __...... | 7 | 75 |
| MIMAT0012565 | aqc-miR171f | 2 | __...... | 7 | 75 |
| MIMAT0013506 | mtr-miR2678 | 3 | _......_ | 8 | 75 |
| MIMAT0012477 | dsi-miR-932-5p | 6 | __...... | 1 | 75 |
| MIMAT0012259 | dps-miR-932-5p | 6 | __...... | 1 | 75 |
| MIMAT0012064 | bta-miR-2473 | 1 | _......_ | 6 | 75 |
| MIMAT0011462 | cel-miR-2220-3p | 6 | __...... | 1 | 75 |
| MIMAT0011458 | cel-miR-2218b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0012133 | sme-miR-87c-5p | 7 | __...... | 2 | 75 |
| MIMAT0009467 | bfl-miR-10a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0009160 | bmo-miR-932 | 6 | __...... | 1 | 75 |
| MIMAT0032083 | dvi-miR-10-3p | 1 | ......__ | 6 | 75 |
| MIMAT0008395 | tca-miR-929-5p | 1 | __...... | 6 | 75 |
| MIMAT0008392 | tca-miR-932-5p | 6 | __...... | 1 | 75 |
| MIMAT0019101 | tca-miR-10-3p | 1 | ......__ | 6 | 75 |
| MIMAT0007776 | osa-miR1854-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017337 | gma-miR482a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0007319 | oan-miR-1420g-3p | 1 | _......_ | 6 | 75 |
| MIMAT0007269 | oan-miR-32-3p | 6 | _......_ | 1 | 75 |
| MIMAT0007136 | oan-miR-1384 | 8 | _......_ | 3 | 75 |
| MIMAT0007123 | oan-miR-10a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0006928 | oan-miR-1420d-3p | 1 | _......_ | 6 | 75 |
| MIMAT0005531 | ddi-miR-1176 | 7 | _......_ | 2 | 75 |
| MIMAT0005479 | dme-miR-932-5p | 6 | __...... | 1 | 75 |
| MIMAT0004444 | ame-miR-932 | 6 | __...... | 1 | 75 |
| MIMAT0004322 | ath-miR870-3p | 7 | ......__ | 2 | 75 |
| MIMAT0032017 | cel-miR-789-2-5p | 1 | __...... | 6 | 75 |
| MIMAT0032016 | cel-miR-789-5p | 1 | __...... | 6 | 75 |
| MIMAT0015226 | bmo-miR-10-3p | 1 | ......__ | 6 | 75 |
| MIMAT0003906 | ppt-miR1217-3p | 6 | ......__ | 1 | 75 |
| MIMAT0003391 | dre-miR-10a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0017103 | rno-miR-32-3p | 7 | _......_ | 2 | 75 |
| MIMAT0004709 | rno-miR-10a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0017050 | mmu-miR-32-3p | 6 | _......_ | 1 | 75 |
| MIMAT0004659 | mmu-miR-10a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0004555 | hsa-miR-10a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0012531 | dme-miR-10-3p | 1 | ......__ | 6 | 75 |
| MIMAT0004505 | hsa-miR-32-3p | 6 | _......_ | 1 | 75 |
