| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | caaccacc | 8 | ||
| MIMAT0027453 | hsa-miR-6776-3p | 1 | ........ | 8 | 100 |
| MIMAT0020602 | hsa-miR-1273g-5p | 8 | ........ | 1 | 100 |
| MIMAT0017190 | mghv-miR-M1-6-5p | 1 | ........ | 8 | 100 |
| MIMAT0036299 | chi-miR-876-3p | 8 | _....... | 2 | 87 |
| MIMAT0034577 | eca-miR-9035 | 8 | ......._ | 2 | 87 |
| MIMAT0019999 | cel-miR-4812-3p | 1 | ......._ | 7 | 87 |
| MIMAT0018882 | tca-miR-3791-5p | 8 | _....... | 2 | 87 |
| MIMAT0016116 | ppy-miR-876-3p | 8 | _....... | 2 | 87 |
| MIMAT0014246 | aae-miR-34-3p | 1 | ......._ | 7 | 87 |
| MIMAT0012026 | bta-miR-2448-3p | 7 | ......._ | 1 | 87 |
| MIMAT0008327 | ptr-miR-876 | 8 | _....... | 2 | 87 |
| MIMAT0032038 | cel-miR-1829c-3p | 1 | ......._ | 7 | 87 |
| MIMAT0032037 | cel-miR-1829b-3p | 1 | ......._ | 7 | 87 |
| MIMAT0006520 | mml-miR-876-3p | 8 | _....... | 2 | 87 |
| MIMAT0007469 | gga-miR-1603 | 8 | ......._ | 2 | 87 |
| MIMAT0007021 | oan-miR-1361-5p | 8 | ......._ | 2 | 87 |
| MIMAT0004925 | hsa-miR-876-3p | 8 | _....... | 2 | 87 |
| MIMAT0020770 | cel-miR-41-5p | 7 | _....... | 1 | 87 |
| MIMAT0035283 | gsa-miR-7-3p | 1 | ......t. | 8 | 87 |
| MIMAT0032914 | ppc-miR-133-5p | 8 | ......g. | 1 | 87 |
| MIMAT0022929 | hsa-miR-758-5p | 8 | ......t. | 1 | 87 |
| MIMAT0020774 | cel-miR-77-5p | 8 | ......t. | 1 | 87 |
| MIMAT0037293 | ame-miR-9888 | 7 | __...... | 2 | 75 |
| MIMAT0036810 | oha-miR-203-5p | 7 | _......_ | 2 | 75 |
| MIMAT0036758 | oha-miR-181a-1-3p | 1 | __...... | 6 | 75 |
| MIMAT0036719 | oha-miR-140-5p | 8 | _......_ | 3 | 75 |
| MIMAT0036685 | oha-miR-1306-5p | 2 | __...... | 7 | 75 |
| MIMAT0036560 | tch-miR-140-5p | 8 | _......_ | 3 | 75 |
| MIMAT0036197 | chi-miR-380-5p | 7 | ......__ | 2 | 75 |
| MIMAT0035960 | chi-miR-140-5p | 8 | _......_ | 3 | 75 |
| MIMAT0035505 | bdi-miR9496 | 7 | ......__ | 2 | 75 |
| MIMAT0035193 | efu-miR-140 | 8 | _......_ | 3 | 75 |
| MIMAT0035050 | efu-miR-9323 | 3 | __...... | 8 | 75 |
| MIMAT0035042 | efu-miR-487 | 6 | _......_ | 1 | 75 |
| MIMAT0035008 | efu-miR-181f | 1 | __...... | 6 | 75 |
| MIMAT0034772 | efu-miR-9192 | 8 | ......__ | 3 | 75 |
| MIMAT0034312 | cfa-miR-8822 | 6 | ......__ | 1 | 75 |
| MIMAT0034248 | gra-miR8717 | 8 | ......__ | 3 | 75 |
| MIMAT0033372 | str-miR-7880o-5p | 6 | ......__ | 1 | 75 |
| MIMAT0033335 | str-miR-7880e-2-5p | 6 | ......__ | 1 | 75 |
| MIMAT0033310 | str-miR-7880b-4-5p | 6 | ......__ | 1 | 75 |
| MIMAT0033309 | str-miR-7880b-3-5p | 6 | ......__ | 1 | 75 |
| MIMAT0033308 | str-miR-7880b-2-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032486 | ssa-miR-203b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0032485 | ssa-miR-203a-2-5p | 7 | _......_ | 2 | 75 |
| MIMAT0032483 | ssa-miR-203a-5p | 7 | _......_ | 2 | 75 |
| MIMAT0032359 | ssa-miR-140-5p | 8 | _......_ | 3 | 75 |
| MIMAT0031614 | bbe-miR-2057-3p | 7 | __...... | 2 | 75 |
| MIMAT0030829 | prd-miR-7964a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0029823 | mmu-miR-7658-3p | 1 | __...... | 6 | 75 |
| MIMAT0029458 | ipu-miR-203b | 7 | _......_ | 2 | 75 |
| MIMAT0029457 | ipu-miR-203a | 7 | _......_ | 2 | 75 |
| MIMAT0029339 | lja-miR7523b | 1 | __...... | 6 | 75 |
| MIMAT0029338 | lja-miR7523a | 1 | __...... | 6 | 75 |
| MIMAT0028777 | mdo-miR-7372-3p | 1 | __...... | 6 | 75 |
| MIMAT0028474 | mdo-miR-7254-5p | 3 | __...... | 8 | 75 |
| MIMAT0028433 | mmu-miR-7232-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028326 | mml-miR-7186-5p | 8 | _......_ | 3 | 75 |
| MIMAT0026261 | ccr-miR-203b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0026242 | ccr-miR-182-3p | 6 | _......_ | 1 | 75 |
| MIMAT0026220 | ccr-miR-140-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028057 | mmu-miR-7075-3p | 1 | ......__ | 6 | 75 |
| MIMAT0027997 | mmu-miR-7046-3p | 3 | _......_ | 8 | 75 |
| MIMAT0025763 | gga-miR-6662-3p | 8 | ......__ | 3 | 75 |
| MIMAT0025644 | gga-miR-6568-3p | 2 | ......__ | 7 | 75 |
| MIMAT0025442 | pol-miR-203-5p | 7 | _......_ | 2 | 75 |
| MIMAT0025434 | pol-miR-140-5p | 8 | _......_ | 3 | 75 |
| MIMAT0023971 | cgr-miR-497-3p | 3 | _......_ | 8 | 75 |
| MIMAT0023767 | cgr-miR-140-5p | 8 | _......_ | 3 | 75 |
| MIMAT0022552 | ola-miR-140-5p | 8 | _......_ | 3 | 75 |
| MIMAT0022434 | ath-miR5660 | 8 | __...... | 3 | 75 |
| MIMAT0022355 | mmu-miR-5615-5p | 8 | ......__ | 3 | 75 |
| MIMAT0022319 | cin-miR-5598-5p | 6 | _......_ | 1 | 75 |
| MIMAT0021851 | aca-miR-203-5p | 7 | _......_ | 2 | 75 |
| MIMAT0021765 | aca-miR-140-5p | 8 | _......_ | 3 | 75 |
| MIMAT0021683 | sbi-miR5385 | 1 | __...... | 6 | 75 |
| MIMAT0021497 | asu-miR-133-5p | 8 | ......__ | 3 | 75 |
| MIMAT0019513 | pma-miR-203b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0019511 | pma-miR-203a-5p | 7 | _......_ | 2 | 75 |
| MIMAT0019471 | pma-miR-140 | 8 | _......_ | 3 | 75 |
| MIMAT0019294 | oar-miR-487b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0019261 | oar-miR-758-5p | 6 | ......__ | 1 | 75 |
| MIMAT0019259 | oar-miR-323a-5p | 7 | __...... | 2 | 75 |
| MIMAT0019253 | oar-miR-380-5p | 7 | ......__ | 2 | 75 |
| MIMAT0019017 | hsa-miR-4483 | 8 | __...... | 3 | 75 |
| MIMAT0018675 | tca-miR-3824-3p | 7 | ......__ | 2 | 75 |
| MIMAT0018540 | ame-miR-3766 | 8 | __...... | 3 | 75 |
| MIMAT0018521 | ame-miR-3751 | 7 | __...... | 2 | 75 |
| MIMAT0016940 | bta-miR-3596 | 1 | _......_ | 6 | 75 |
| MIMAT0017973 | ssc-miR-487b | 6 | _......_ | 1 | 75 |
| MIMAT0016734 | cin-miR-4137-3p | 6 | __...... | 1 | 75 |
| MIMAT0016591 | cin-miR-4051-5p | 3 | ......__ | 8 | 75 |
| MIMAT0016570 | cin-miR-4040-3p | 1 | ......__ | 6 | 75 |
| MIMAT0016533 | cin-miR-4020b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0016532 | cin-miR-4020a-5p | 7 | _......_ | 2 | 75 |
| MIMAT0016313 | sja-miR-3504 | 8 | _......_ | 3 | 75 |
| MIMAT0016215 | ppy-miR-1293 | 8 | __...... | 3 | 75 |
| MIMAT0015825 | ppy-miR-323-5p | 7 | __...... | 2 | 75 |
| MIMAT0015763 | ppy-miR-140-5p | 8 | _......_ | 3 | 75 |
| MIMAT0015463 | bmo-miR-3278 | 8 | __...... | 3 | 75 |
| MIMAT0014934 | mmu-miR-3102-5p.2-5p | 6 | __...... | 1 | 75 |
| MIMAT0014838 | mmu-miR-3066-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027022 | tgu-miR-203-5p | 7 | _......_ | 2 | 75 |
| MIMAT0014557 | tgu-miR-140-5p | 8 | _......_ | 3 | 75 |
| MIMAT0013131 | eca-miR-323-5p | 7 | __...... | 2 | 75 |
| MIMAT0013122 | eca-miR-876-3p | 7 | __...... | 2 | 75 |
| MIMAT0012985 | eca-miR-1905c | 2 | __...... | 7 | 75 |
| MIMAT0012926 | eca-miR-140-5p | 8 | _......_ | 3 | 75 |
| MIMAT0012888 | eca-miR-1244 | 8 | _......_ | 3 | 75 |
| MIMAT0026946 | mdo-miR-497-3p | 3 | _......_ | 8 | 75 |
| MIMAT0012745 | mdo-miR-140-5p | 8 | _......_ | 3 | 75 |
| MIMAT0013712 | bmo-miR-2808a-3p | 7 | __...... | 2 | 75 |
| MIMAT0013671 | bmo-miR-2808c | 7 | __...... | 2 | 75 |
| MIMAT0013577 | cte-miR-2721 | 6 | _......_ | 1 | 75 |
| MIMAT0012011 | bta-miR-2437 | 7 | _......_ | 2 | 75 |
| MIMAT0011870 | bta-miR-2337 | 6 | _......_ | 1 | 75 |
| MIMAT0011823 | bta-miR-1603 | 6 | _......_ | 1 | 75 |
| MIMAT0011812 | bta-miR-2301 | 6 | _......_ | 1 | 75 |
| MIMAT0009754 | aqu-miR-2021-3p | 7 | __...... | 2 | 75 |
| MIMAT0009729 | lgi-miR-1988 | 7 | _......_ | 2 | 75 |
| MIMAT0017350 | mmu-miR-1968-3p | 1 | __...... | 6 | 75 |
| MIMAT0019136 | mmu-miR-1306-5p | 2 | __...... | 7 | 75 |
| MIMAT0032052 | dvi-miR-263b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0008012 | ptr-miR-1293 | 8 | __...... | 3 | 75 |
| MIMAT0006769 | cel-miR-1829a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0026909 | mml-miR-758-5p | 7 | ......__ | 2 | 75 |
| MIMAT0026887 | mml-miR-497-3p | 3 | _......_ | 8 | 75 |
| MIMAT0026881 | mml-miR-487b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0026866 | mml-miR-380-5p | 7 | ......__ | 2 | 75 |
| MIMAT0006264 | mml-miR-323a-5p | 7 | __...... | 2 | 75 |
| MIMAT0006197 | mml-miR-140-5p | 8 | _......_ | 3 | 75 |
| MIMAT0007627 | gga-miR-1728-5p | 6 | ......__ | 1 | 75 |
| MIMAT0015262 | cin-miR-183-3p | 6 | _......_ | 1 | 75 |
| MIMAT0026763 | gga-miR-1306-5p | 1 | __...... | 6 | 75 |
| MIMAT0007084 | oan-miR-1421s-5p | 7 | __...... | 2 | 75 |
| MIMAT0007080 | oan-miR-1421q-5p | 7 | __...... | 2 | 75 |
| MIMAT0007074 | oan-miR-1421n-5p | 7 | __...... | 2 | 75 |
| MIMAT0006812 | oan-miR-140-5p | 8 | _......_ | 3 | 75 |
| MIMAT0005697 | vvi-miR171h | 6 | ......__ | 1 | 75 |
| MIMAT0022725 | hsa-miR-1255b-2-3p | 1 | _......_ | 6 | 75 |
| MIMAT0005883 | hsa-miR-1293 | 8 | __...... | 3 | 75 |
| MIMAT0005431 | cre-miR1173 | 7 | ......__ | 2 | 75 |
| MIMAT0017316 | rno-miR-758-5p | 6 | ......__ | 1 | 75 |
| MIMAT0005308 | rno-miR-380-5p | 7 | ......__ | 2 | 75 |
| MIMAT0005166 | ppt-miR1050 | 3 | __...... | 8 | 75 |
| MIMAT0005110 | ppt-miR1024b | 8 | ......__ | 3 | 75 |
| MIMAT0005109 | ppt-miR1024a | 8 | ......__ | 3 | 75 |
| MIMAT0005489 | dme-miR-973-5p | 6 | ......__ | 1 | 75 |
| MIMAT0004855 | mmu-miR-876-3p | 8 | _......_ | 3 | 75 |
| MIMAT0004240 | ath-miR823 | 8 | __...... | 3 | 75 |
| MIMAT0026672 | mdo-miR-182-3p | 6 | _......_ | 1 | 75 |
| MIMAT0003803 | bta-miR-380-5p | 6 | ......__ | 1 | 75 |
| MIMAT0003601 | xtr-miR-140 | 7 | _......_ | 2 | 75 |
| MIMAT0017247 | mmu-miR-497a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017235 | mmu-miR-758-5p | 6 | ......__ | 1 | 75 |
| MIMAT0017221 | rno-miR-487b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0026614 | hsa-miR-487b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0003025 | tni-miR-140 | 8 | _......_ | 3 | 75 |
| MIMAT0003024 | fru-miR-140 | 8 | _......_ | 3 | 75 |
| MIMAT0004768 | hsa-miR-497-3p | 3 | _......_ | 8 | 75 |
| MIMAT0002256 | mne-miR-140 | 7 | _......_ | 2 | 75 |
| MIMAT0002255 | ptr-miR-140 | 7 | _......_ | 2 | 75 |
| MIMAT0026559 | hsa-miR-487a-5p | 6 | _......_ | 1 | 75 |
| MIMAT0002143 | ssc-miR-140-5p | 7 | _......_ | 2 | 75 |
| MIMAT0003407 | dre-miR-203b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0001836 | dre-miR-140-5p | 8 | _......_ | 3 | 75 |
| MIMAT0031923 | dre-miR-203a-5p | 7 | _......_ | 2 | 75 |
| MIMAT0001159 | gga-miR-140-5p | 7 | _......_ | 2 | 75 |
| MIMAT0017153 | rno-miR-203a-5p | 7 | _......_ | 2 | 75 |
| MIMAT0017138 | rno-miR-181a-2-3p | 1 | __...... | 6 | 75 |
| MIMAT0004696 | hsa-miR-323a-5p | 7 | __...... | 2 | 75 |
| MIMAT0000744 | mmu-miR-380-5p | 7 | ......__ | 2 | 75 |
| MIMAT0000734 | hsa-miR-380-5p | 6 | ......__ | 1 | 75 |
| MIMAT0000573 | rno-miR-140-5p | 8 | _......_ | 3 | 75 |
| MIMAT0004638 | mmu-miR-323-5p | 7 | __...... | 2 | 75 |
| MIMAT0004637 | rno-miR-323-5p | 7 | __...... | 2 | 75 |
| MIMAT0000431 | hsa-miR-140-5p | 8 | _......_ | 3 | 75 |
| MIMAT0020822 | dme-miR-263b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0031890 | hsa-miR-203a-5p | 7 | _......_ | 2 | 75 |
| MIMAT0004547 | mmu-miR-203-5p | 7 | _......_ | 2 | 75 |
| MIMAT0016995 | mmu-miR-182-3p | 6 | _......_ | 1 | 75 |
| MIMAT0000151 | mmu-miR-140-5p | 8 | _......_ | 3 | 75 |
