| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | caagtac | 7 | ||
| MIMAT0032296 | ssa-miR-10b-3p | 1 | ....... | 7 | 100 |
| MIMAT0030489 | prd-miR-7872-3p | 1 | ....... | 7 | 100 |
| MIMAT0025008 | hme-miR-6303-5p | 2 | ....... | 8 | 100 |
| MIMAT0024927 | gma-miR1516d | 7 | ....... | 1 | 100 |
| MIMAT0004462 | mdv2-miR-M20-3p | 2 | ....... | 8 | 100 |
| MIMAT0036861 | oha-miR-26-5p | 3 | ......_ | 8 | 85 |
| MIMAT0036602 | tch-miR-26a-2-5p | 3 | ......_ | 8 | 85 |
| MIMAT0036550 | tch-miR-26b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0036488 | tch-miR-26a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0036103 | chi-miR-26b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0036101 | chi-miR-26a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0035564 | dvi-miR-252-5p | 3 | _...... | 8 | 85 |
| MIMAT0035182 | efu-miR-9365 | 8 | ......_ | 3 | 85 |
| MIMAT0035076 | efu-miR-26b | 3 | ......_ | 8 | 85 |
| MIMAT0035006 | efu-miR-26c | 3 | ......_ | 8 | 85 |
| MIMAT0034939 | efu-miR-26a | 3 | ......_ | 8 | 85 |
| MIMAT0034419 | cfa-miR-508a | 6 | ......_ | 1 | 85 |
| MIMAT0034366 | cfa-miR-8869 | 6 | _...... | 1 | 85 |
| MIMAT0033818 | pxy-miR-2767 | 1 | ......_ | 6 | 85 |
| MIMAT0033713 | pxy-miR-252 | 3 | _...... | 8 | 85 |
| MIMAT0033218 | ppc-miR-8336-5p | 6 | ......_ | 1 | 85 |
| MIMAT0033187 | ppc-miR-8245b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0032571 | ssa-miR-26d-5p | 3 | ......_ | 8 | 85 |
| MIMAT0032569 | ssa-miR-26b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0032563 | ssa-miR-26a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0031655 | bbe-miR-252a-5p | 3 | _...... | 8 | 85 |
| MIMAT0031591 | bbe-miR-1-3p | 1 | _...... | 6 | 85 |
| MIMAT0031591 | bbe-miR-1-3p | 8 | _...... | 3 | 85 |
| MIMAT0030981 | hsa-miR-8054 | 3 | _...... | 8 | 85 |
| MIMAT0030484 | prd-miR-7870-5p | 8 | _...... | 3 | 85 |
| MIMAT0030361 | hhi-miR-26 | 3 | ......_ | 8 | 85 |
| MIMAT0030163 | bdi-miR5049-3p | 1 | ......_ | 6 | 85 |
| MIMAT0030052 | oar-miR-26b | 3 | ......_ | 8 | 85 |
| MIMAT0030051 | oar-miR-26a | 3 | ......_ | 8 | 85 |
| MIMAT0032217 | lva-miR-252a-5p | 3 | _...... | 8 | 85 |
| MIMAT0032170 | pmi-miR-252a-5p | 3 | _...... | 8 | 85 |
| MIMAT0029617 | crm-miR-7600 | 8 | ......_ | 3 | 85 |
| MIMAT0029486 | ipu-miR-26b | 3 | ......_ | 8 | 85 |
| MIMAT0029485 | ipu-miR-26a | 3 | ......_ | 8 | 85 |
| MIMAT0026281 | ccr-miR-26a | 3 | ......_ | 8 | 85 |
| MIMAT0024982 | hme-miR-3338 | 8 | _...... | 3 | 85 |
| MIMAT0024948 | hme-miR-252 | 3 | _...... | 8 | 85 |
| MIMAT0024488 | mse-miR-2767 | 1 | ......_ | 6 | 85 |
| MIMAT0024465 | mse-miR-252 | 3 | _...... | 8 | 85 |
| MIMAT0024432 | mse-miR-3338 | 8 | _...... | 3 | 85 |
| MIMAT0024379 | ppy-miR-548c | 3 | _...... | 8 | 85 |
| MIMAT0024266 | ggo-miR-548c | 3 | _...... | 8 | 85 |
| MIMAT0024091 | ggo-miR-26b | 3 | ......_ | 8 | 85 |
| MIMAT0023955 | cgr-miR-412-3p | 6 | _...... | 1 | 85 |
| MIMAT0023872 | cgr-miR-26b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0023871 | cgr-miR-26a | 3 | ......_ | 8 | 85 |
| MIMAT0023481 | hco-miR-5928e | 3 | ......_ | 8 | 85 |
| MIMAT0023168 | gma-miR5559 | 6 | ......_ | 1 | 85 |
| MIMAT0022575 | ola-miR-26 | 3 | ......_ | 8 | 85 |
| MIMAT0023103 | tur-miR-12a-3p | 6 | _...... | 1 | 85 |
| MIMAT0023076 | tur-miR-252-5p | 3 | _...... | 8 | 85 |
| MIMAT0022303 | hsa-miR-548av-5p | 3 | _...... | 8 | 85 |
| MIMAT0022285 | hsa-miR-5585-5p | 3 | _...... | 8 | 85 |
| MIMAT0022221 | mtr-miR5559-5p | 6 | ......_ | 1 | 85 |
| MIMAT0022215 | mtr-miR5557-5p | 3 | ......_ | 8 | 85 |
| MIMAT0021902 | aca-miR-26-5p | 3 | ......_ | 8 | 85 |
| MIMAT0021795 | aca-miR-1662-3p | 3 | ......_ | 8 | 85 |
| MIMAT0021423 | asu-miR-1-5p | 7 | _...... | 2 | 85 |
| MIMAT0020205 | dme-miR-4975-5p | 8 | ......_ | 3 | 85 |
| MIMAT0020040 | sko-miR-4829c | 7 | _...... | 2 | 85 |
| MIMAT0019411 | pma-miR-26b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019408 | pma-miR-26a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019367 | pma-miR-1c-5p | 7 | _...... | 2 | 85 |
| MIMAT0018992 | hsa-miR-4465 | 3 | ......_ | 8 | 85 |
| MIMAT0018428 | nlo-miR-252 | 2 | _...... | 7 | 85 |
| MIMAT0018410 | ngi-miR-252 | 1 | _...... | 6 | 85 |
| MIMAT0018804 | tca-miR-252a-5p | 3 | _...... | 8 | 85 |
| MIMAT0016125 | ppy-miR-890 | 6 | ......_ | 1 | 85 |
| MIMAT0015820 | ppy-miR-302e | 2 | _...... | 7 | 85 |
| MIMAT0015733 | ppy-miR-26b | 3 | ......_ | 8 | 85 |
| MIMAT0015701 | nvi-miR-252 | 3 | _...... | 8 | 85 |
| MIMAT0015557 | bmo-miR-3370 | 6 | ......_ | 1 | 85 |
| MIMAT0015526 | bmo-miR-3338-3p | 8 | _...... | 3 | 85 |
| MIMAT0015503 | bmo-miR-3315 | 6 | ......_ | 1 | 85 |
| MIMAT0014719 | api-miR-252a | 3 | _...... | 8 | 85 |
| MIMAT0014516 | tgu-miR-26-5p | 3 | ......_ | 8 | 85 |
| MIMAT0014373 | cqu-miR-252-5p | 3 | _...... | 8 | 85 |
| MIMAT0014254 | aae-miR-12-3p | 8 | _...... | 3 | 85 |
| MIMAT0014216 | aae-miR-252-5p | 2 | _...... | 7 | 85 |
| MIMAT0012975 | eca-miR-26a | 3 | ......_ | 8 | 85 |
| MIMAT0012736 | mdo-miR-26-5p | 3 | ......_ | 8 | 85 |
| MIMAT0013643 | bmo-miR-2767 | 1 | ......_ | 6 | 85 |
| MIMAT0012647 | dpu-miR-252a | 3 | _...... | 8 | 85 |
| MIMAT0012465 | dsi-miR-252-5p | 3 | _...... | 8 | 85 |
| MIMAT0012261 | dps-miR-252-5p | 3 | _...... | 8 | 85 |
| MIMAT0011936 | bta-miR-2385-3p | 1 | _...... | 6 | 85 |
| MIMAT0010124 | bmo-miR-252-5p | 3 | _...... | 8 | 85 |
| MIMAT0010113 | ame-miR-252a | 3 | _...... | 8 | 85 |
| MIMAT0009672 | spu-miR-252a | 3 | _...... | 8 | 85 |
| MIMAT0009638 | sko-miR-252a | 3 | _...... | 8 | 85 |
| MIMAT0019152 | sko-miR-1-5p | 8 | _...... | 3 | 85 |
| MIMAT0009591 | lgi-miR-252a | 3 | _...... | 8 | 85 |
| MIMAT0009536 | cte-miR-252a | 3 | _...... | 8 | 85 |
| MIMAT0009498 | bfl-miR-252a | 3 | _...... | 8 | 85 |
| MIMAT0019137 | bfl-miR-1-5p | 1 | _...... | 6 | 85 |
| MIMAT0019137 | bfl-miR-1-5p | 8 | _...... | 3 | 85 |
| MIMAT0032045 | dvi-miR-12-3p | 8 | _...... | 3 | 85 |
| MIMAT0008332 | ptr-miR-890 | 6 | ......_ | 1 | 85 |
| MIMAT0008225 | ptr-miR-548k | 3 | _...... | 8 | 85 |
| MIMAT0008077 | ptr-miR-26b | 3 | ......_ | 8 | 85 |
| MIMAT0008016 | ptr-miR-1297 | 3 | ......_ | 8 | 85 |
| MIMAT0006678 | cfa-miR-26b | 3 | ......_ | 8 | 85 |
| MIMAT0006595 | cfa-miR-26a | 3 | ......_ | 8 | 85 |
| MIMAT0006529 | mml-miR-890-5p | 6 | ......_ | 1 | 85 |
| MIMAT0006166 | mml-miR-26b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020935 | gma-miR390b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0006991 | oan-miR-26-5p | 3 | ......_ | 8 | 85 |
| MIMAT0005886 | hsa-miR-1297 | 3 | ......_ | 8 | 85 |
| MIMAT0005882 | hsa-miR-548k | 3 | _...... | 8 | 85 |
| MIMAT0005516 | dme-miR-252-5p | 3 | _...... | 8 | 85 |
| MIMAT0004912 | hsa-miR-890 | 6 | ......_ | 1 | 85 |
| MIMAT0003569 | xtr-miR-26 | 3 | ......_ | 8 | 85 |
| MIMAT0003531 | bta-miR-26b | 3 | ......_ | 8 | 85 |
| MIMAT0003516 | bta-miR-26a | 3 | ......_ | 8 | 85 |
| MIMAT0003038 | tni-miR-26 | 3 | ......_ | 8 | 85 |
| MIMAT0003037 | fru-miR-26 | 3 | ......_ | 8 | 85 |
| MIMAT0002350 | ppa-miR-26a | 3 | ......_ | 8 | 85 |
| MIMAT0002349 | mml-miR-26a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0002348 | mne-miR-26a | 3 | ......_ | 8 | 85 |
| MIMAT0002347 | lla-miR-26a | 3 | ......_ | 8 | 85 |
| MIMAT0002346 | ppy-miR-26a | 3 | ......_ | 8 | 85 |
| MIMAT0002345 | ggo-miR-26a | 3 | ......_ | 8 | 85 |
| MIMAT0002344 | ptr-miR-26a | 3 | ......_ | 8 | 85 |
| MIMAT0002135 | ssc-miR-26a | 3 | ......_ | 8 | 85 |
| MIMAT0001795 | dre-miR-26b | 3 | ......_ | 8 | 85 |
| MIMAT0001794 | dre-miR-26a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0001118 | gga-miR-26a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000797 | rno-miR-26b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000796 | rno-miR-26a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000534 | mmu-miR-26b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000533 | mmu-miR-26a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020794 | dme-miR-12-3p | 8 | _...... | 3 | 85 |
| MIMAT0000083 | hsa-miR-26b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000082 | hsa-miR-26a-5p | 3 | ......_ | 8 | 85 |
