| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | caagtcac | 8 | ||
| MIMAT0036073 | chi-miR-224-5p | 1 | ........ | 8 | 100 |
| MIMAT0013206 | eca-miR-224 | 1 | ........ | 8 | 100 |
| MIMAT0009271 | bta-miR-224 | 1 | ........ | 8 | 100 |
| MIMAT0006744 | cfa-miR-224 | 1 | ........ | 8 | 100 |
| MIMAT0003119 | rno-miR-224-5p | 1 | ........ | 8 | 100 |
| MIMAT0002599 | ppa-miR-224 | 1 | ........ | 8 | 100 |
| MIMAT0002598 | mne-miR-224 | 1 | ........ | 8 | 100 |
| MIMAT0002597 | ppy-miR-224 | 1 | ........ | 8 | 100 |
| MIMAT0002596 | ggo-miR-224 | 1 | ........ | 8 | 100 |
| MIMAT0002595 | ptr-miR-224 | 1 | ........ | 8 | 100 |
| MIMAT0002594 | mml-miR-224-5p | 1 | ........ | 8 | 100 |
| MIMAT0002132 | ssc-miR-224 | 1 | ........ | 8 | 100 |
| MIMAT0000281 | hsa-miR-224-5p | 1 | ........ | 8 | 100 |
| MIMAT0036741 | oha-miR-15a-3p | 1 | ......._ | 7 | 87 |
| MIMAT0035926 | chi-miR-125b-3p | 2 | ......._ | 8 | 87 |
| MIMAT0034488 | eca-miR-8956 | 8 | ......._ | 2 | 87 |
| MIMAT0034380 | cfa-miR-8880 | 2 | ......._ | 8 | 87 |
| MIMAT0030976 | stu-miR8050-3p | 7 | ......._ | 1 | 87 |
| MIMAT0029956 | osa-miR7692-3p | 7 | ......._ | 1 | 87 |
| MIMAT0029032 | gga-miR-7439-5p | 7 | ......._ | 1 | 87 |
| MIMAT0028706 | mdo-miR-7347-5p | 1 | ......._ | 7 | 87 |
| MIMAT0027863 | mmu-miR-6980-3p | 7 | ......._ | 1 | 87 |
| MIMAT0027541 | hsa-miR-6820-3p | 8 | _....... | 2 | 87 |
| MIMAT0021793 | aca-miR-15a-3p | 1 | ......._ | 7 | 87 |
| MIMAT0021253 | mtr-miR5255 | 7 | ......._ | 1 | 87 |
| MIMAT0015587 | bmo-miR-3388-5p | 2 | ......._ | 8 | 87 |
| MIMAT0015038 | hsa-miR-3164 | 8 | _....... | 2 | 87 |
| MIMAT0014628 | tgu-miR-125-1-3p | 2 | ......._ | 8 | 87 |
| MIMAT0012386 | dps-miR-2562-5p | 2 | ......._ | 8 | 87 |
| MIMAT0031073 | mml-miR-125b-2-3p | 2 | ......._ | 8 | 87 |
| MIMAT0026493 | gga-miR-125b-3p | 2 | ......._ | 8 | 87 |
| MIMAT0026467 | rno-miR-125b-2-3p | 2 | ......._ | 8 | 87 |
| MIMAT0000671 | mmu-miR-224-5p | 2 | _....... | 8 | 87 |
| MIMAT0004529 | mmu-miR-125b-2-3p | 2 | ......._ | 8 | 87 |
| MIMAT0005561 | mcmv-miR-m108-2-3p | 8 | .g...... | 1 | 87 |
| MIMAT0037179 | ata-miR169f-3p | 3 | ......__ | 8 | 75 |
| MIMAT0036750 | oha-miR-1677b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0035951 | chi-miR-134 | 7 | __...... | 2 | 75 |
| MIMAT0035787 | tae-miR9671-5p | 6 | _......_ | 1 | 75 |
| MIMAT0035639 | dvi-miR-9548-3p | 8 | __...... | 3 | 75 |
| MIMAT0034936 | efu-miR-9285 | 7 | _......_ | 2 | 75 |
| MIMAT0034862 | efu-miR-9246b | 3 | ......__ | 8 | 75 |
| MIMAT0034828 | efu-miR-9226 | 2 | ......__ | 7 | 75 |
| MIMAT0034788 | efu-miR-9202 | 8 | __...... | 3 | 75 |
| MIMAT0034650 | eca-miR-9103 | 3 | ......__ | 8 | 75 |
| MIMAT0034326 | cfa-miR-8833 | 6 | _......_ | 1 | 75 |
| MIMAT0033997 | gra-miR7486e | 7 | ......__ | 2 | 75 |
| MIMAT0033922 | atr-miR169b | 3 | ......__ | 8 | 75 |
| MIMAT0033143 | ppc-miR-8229b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0033087 | ppc-miR-76-5p | 7 | _......_ | 2 | 75 |
| MIMAT0032857 | ppc-miR-2238f-3p | 7 | __...... | 2 | 75 |
| MIMAT0032732 | ssa-miR-7132b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032665 | ssa-miR-7132a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0030908 | stu-miR8012 | 7 | _......_ | 2 | 75 |
| MIMAT0030187 | bdi-miR7727-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032185 | pmi-miR-2011-5p | 2 | __...... | 7 | 75 |
| MIMAT0029897 | mmu-miR-7685-3p | 7 | ......__ | 2 | 75 |
| MIMAT0029786 | tgu-miR-7643-5p | 6 | __...... | 1 | 75 |
| MIMAT0028869 | mdo-miR-7388a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0028805 | mdo-miR-7373c-3p | 8 | __...... | 3 | 75 |
| MIMAT0028439 | mmu-miR-7235-3p | 8 | _......_ | 3 | 75 |
| MIMAT0028249 | mml-miR-6505-3p | 6 | _......_ | 1 | 75 |
| MIMAT0028065 | mmu-miR-7079-3p | 6 | _......_ | 1 | 75 |
| MIMAT0027664 | hsa-miR-6882-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025794 | gga-miR-6688-3p | 3 | __...... | 8 | 75 |
| MIMAT0025567 | bta-miR-6531 | 8 | ......__ | 3 | 75 |
| MIMAT0025467 | hsa-miR-6505-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025064 | rno-miR-6325 | 2 | _......_ | 7 | 75 |
| MIMAT0024286 | ggo-miR-1264 | 2 | ......__ | 7 | 75 |
| MIMAT0023760 | cgr-miR-134 | 7 | __...... | 2 | 75 |
| MIMAT0023505 | hco-miR-5989 | 3 | __...... | 8 | 75 |
| MIMAT0023383 | hco-miR-5914 | 8 | __...... | 3 | 75 |
| MIMAT0023184 | gma-miR5779 | 1 | ......__ | 6 | 75 |
| MIMAT0022503 | mmu-miR-344i | 1 | _......_ | 6 | 75 |
| MIMAT0022365 | mmu-miR-5619-5p | 1 | __...... | 6 | 75 |
| MIMAT0022058 | aca-miR-5436-3p | 1 | ......__ | 6 | 75 |
| MIMAT0022007 | aca-miR-5398-3p | 3 | __...... | 8 | 75 |
| MIMAT0021798 | aca-miR-1677b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0021796 | aca-miR-1677a | 6 | _......_ | 1 | 75 |
| MIMAT0019804 | hsa-miR-4704-3p | 3 | __...... | 8 | 75 |
| MIMAT0019308 | oar-miR-134-5p | 7 | __...... | 2 | 75 |
| MIMAT0018957 | hsa-miR-4439 | 6 | __...... | 1 | 75 |
| MIMAT0018242 | gma-miR4353 | 1 | ......__ | 6 | 75 |
| MIMAT0018612 | ame-miR-3743 | 8 | __...... | 3 | 75 |
| MIMAT0019224 | hsa-miR-3691-3p | 3 | ......__ | 8 | 75 |
| MIMAT0018051 | vvi-miR3639-5p | 8 | _......_ | 3 | 75 |
| MIMAT0016514 | cin-miR-4013a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0016486 | cin-miR-4007-5p | 7 | _......_ | 2 | 75 |
| MIMAT0017874 | rno-miR-3583-3p | 8 | _......_ | 3 | 75 |
| MIMAT0016188 | ppy-miR-1264 | 1 | ......__ | 6 | 75 |
| MIMAT0017490 | aly-miR169c-3p | 3 | ......__ | 8 | 75 |
| MIMAT0015427 | bmo-miR-3245 | 2 | __...... | 7 | 75 |
| MIMAT0014980 | hsa-miR-3118 | 7 | __...... | 2 | 75 |
| MIMAT0014472 | tgu-miR-1803-3p | 8 | _......_ | 3 | 75 |
| MIMAT0014457 | tgu-miR-1784-3p | 6 | _......_ | 1 | 75 |
| MIMAT0026959 | tgu-miR-1677-3p | 7 | _......_ | 2 | 75 |
| MIMAT0015327 | zma-miR169p-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013195 | eca-miR-1264 | 1 | ......__ | 6 | 75 |
| MIMAT0013127 | eca-miR-134 | 7 | __...... | 2 | 75 |
| MIMAT0026932 | mdo-miR-301-5p | 8 | _......_ | 3 | 75 |
| MIMAT0012358 | dps-miR-2549-5p | 3 | _......_ | 8 | 75 |
| MIMAT0011928 | bta-miR-2380 | 6 | __...... | 1 | 75 |
| MIMAT0011389 | sbi-miR821e | 1 | _......_ | 6 | 75 |
| MIMAT0011388 | sbi-miR821d | 1 | _......_ | 6 | 75 |
| MIMAT0011387 | sbi-miR821c | 1 | _......_ | 6 | 75 |
| MIMAT0011385 | sbi-miR821a | 1 | _......_ | 6 | 75 |
| MIMAT0011412 | sme-miR-2154-3p | 2 | ......__ | 7 | 75 |
| MIMAT0009883 | cfa-miR-134 | 7 | __...... | 2 | 75 |
| MIMAT0009227 | bta-miR-134 | 7 | __...... | 2 | 75 |
| MIMAT0009087 | dya-miR-284 | 3 | _......_ | 8 | 75 |
| MIMAT0008993 | dwi-miR-284 | 3 | _......_ | 8 | 75 |
| MIMAT0008977 | dvi-miR-284-3p | 3 | _......_ | 8 | 75 |
| MIMAT0008902 | dsi-miR-284 | 3 | _......_ | 8 | 75 |
| MIMAT0008798 | dse-miR-284 | 3 | _......_ | 8 | 75 |
| MIMAT0008708 | dpe-miR-284 | 3 | _......_ | 8 | 75 |
| MIMAT0008628 | dmo-miR-284 | 3 | _......_ | 8 | 75 |
| MIMAT0008611 | dgr-miR-284 | 3 | _......_ | 8 | 75 |
| MIMAT0008513 | der-miR-284 | 3 | _......_ | 8 | 75 |
| MIMAT0008415 | dan-miR-284 | 3 | _......_ | 8 | 75 |
| MIMAT0008031 | ptr-miR-134 | 7 | __...... | 2 | 75 |
| MIMAT0007988 | ptr-miR-1264 | 1 | ......__ | 6 | 75 |
| MIMAT0026850 | mml-miR-301a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0006190 | mml-miR-134-5p | 7 | __...... | 2 | 75 |
| MIMAT0007744 | gga-miR-449b-3p | 2 | __...... | 7 | 75 |
| MIMAT0007720 | gga-miR-1803 | 8 | _......_ | 3 | 75 |
| MIMAT0007718 | gga-miR-1802 | 8 | __...... | 3 | 75 |
| MIMAT0007563 | gga-miR-1677-3p | 6 | _......_ | 1 | 75 |
| MIMAT0007454 | gga-miR-1591-3p | 8 | ......__ | 3 | 75 |
| MIMAT0007434 | gga-miR-1574-5p | 8 | __...... | 3 | 75 |
| MIMAT0006981 | oan-miR-1421j-5p | 2 | __...... | 7 | 75 |
| MIMAT0006887 | oan-miR-1422f-5p | 2 | _......_ | 7 | 75 |
| MIMAT0006881 | oan-miR-1422e-5p | 2 | _......_ | 7 | 75 |
| MIMAT0005135 | ppt-miR1032 | 8 | __...... | 3 | 75 |
| MIMAT0004312 | ath-miR864-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004084 | osa-miR821c | 1 | _......_ | 6 | 75 |
| MIMAT0004083 | osa-miR821b | 1 | _......_ | 6 | 75 |
| MIMAT0004082 | osa-miR821a | 1 | _......_ | 6 | 75 |
| MIMAT0003500 | mmu-miR-710 | 2 | ......__ | 7 | 75 |
| MIMAT0005791 | hsa-miR-1264 | 1 | ......__ | 6 | 75 |
| MIMAT0002291 | ppa-miR-134 | 7 | __...... | 2 | 75 |
| MIMAT0002290 | mne-miR-134 | 7 | __...... | 2 | 75 |
| MIMAT0002289 | ppy-miR-134 | 7 | __...... | 2 | 75 |
| MIMAT0002288 | ggo-miR-134 | 7 | __...... | 2 | 75 |
| MIMAT0015193 | zma-miR169c-3p | 3 | ......__ | 8 | 75 |
| MIMAT0001248 | dps-miR-284 | 3 | _......_ | 8 | 75 |
| MIMAT0000840 | rno-miR-134-5p | 7 | __...... | 2 | 75 |
| MIMAT0000447 | hsa-miR-134-5p | 7 | __...... | 2 | 75 |
| MIMAT0000146 | mmu-miR-134-5p | 7 | __...... | 2 | 75 |
