| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | caataaac | 8 | ||
| MIMAT0031764 | hbv-miR-B3RC-5p | 1 | ........ | 8 | 100 |
| MIMAT0033797 | pxy-miR-8539-3p | 8 | _....... | 2 | 87 |
| MIMAT0028847 | mdo-miR-7386j-3p | 1 | _....... | 7 | 87 |
| MIMAT0023912 | cgr-miR-325-3p | 7 | ......._ | 1 | 87 |
| MIMAT0014062 | osa-miR2931 | 8 | ......._ | 2 | 87 |
| MIMAT0013505 | mtr-miR2677 | 7 | ......._ | 1 | 87 |
| MIMAT0032058 | dvi-miR-7-3p | 1 | ......._ | 7 | 87 |
| MIMAT0026811 | mml-miR-95-5p | 2 | ......._ | 8 | 87 |
| MIMAT0007383 | gma-miR1522 | 7 | ......._ | 1 | 87 |
| MIMAT0004640 | mmu-miR-325-3p | 7 | ......._ | 1 | 87 |
| MIMAT0004639 | rno-miR-325-3p | 7 | ......._ | 1 | 87 |
| MIMAT0020790 | dme-miR-7-3p | 1 | ......._ | 7 | 87 |
| MIMAT0026473 | hsa-miR-95-5p | 2 | ......._ | 8 | 87 |
| MIMAT0034131 | gra-miR8731 | 1 | .t...... | 8 | 87 |
| MIMAT0037301 | ame-miR-9896 | 2 | ......__ | 7 | 75 |
| MIMAT0036709 | oha-miR-137-3p | 6 | ......__ | 1 | 75 |
| MIMAT0033477 | str-miR-234-3p | 6 | ......__ | 1 | 75 |
| MIMAT0033028 | ppc-miR-8364k-5p | 8 | _......_ | 3 | 75 |
| MIMAT0032444 | ssa-miR-192b-3p | 8 | __...... | 3 | 75 |
| MIMAT0032351 | ssa-miR-137-3p | 6 | ......__ | 1 | 75 |
| MIMAT0031842 | cpa-miR8145 | 1 | __...... | 6 | 75 |
| MIMAT0030907 | stu-miR8011a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0031188 | stu-miR7994b-5p | 7 | __...... | 2 | 75 |
| MIMAT0030793 | prd-miR-234-3p | 6 | ......__ | 1 | 75 |
| MIMAT0030779 | prd-miR-7952-3p | 3 | _......_ | 8 | 75 |
| MIMAT0030406 | ptc-miR7834 | 2 | _......_ | 7 | 75 |
| MIMAT0030147 | bdi-miR7712-3p | 6 | ......__ | 1 | 75 |
| MIMAT0029756 | cbn-miR-234 | 6 | ......__ | 1 | 75 |
| MIMAT0029645 | crm-miR-234 | 6 | ......__ | 1 | 75 |
| MIMAT0029413 | ipu-miR-137 | 6 | ......__ | 1 | 75 |
| MIMAT0028853 | mdo-miR-7386e-3p | 1 | __...... | 6 | 75 |
| MIMAT0028553 | mdo-miR-137b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028283 | mml-miR-7172-3p | 1 | __...... | 6 | 75 |
| MIMAT0026217 | ccr-miR-137 | 6 | ......__ | 1 | 75 |
| MIMAT0025398 | tgu-miR-1460 | 8 | _......_ | 3 | 75 |
| MIMAT0025362 | ssc-miR-137 | 6 | ......__ | 1 | 75 |
| MIMAT0025121 | mmu-miR-21b | 8 | __...... | 3 | 75 |
| MIMAT0024939 | hme-miR-137 | 6 | ......__ | 1 | 75 |
| MIMAT0027289 | ppe-miR171e | 6 | ......__ | 1 | 75 |
| MIMAT0023763 | cgr-miR-137-3p | 6 | ......__ | 1 | 75 |
| MIMAT0023375 | hco-miR-234 | 7 | ......__ | 2 | 75 |
| MIMAT0023099 | tur-miR-137-3p | 6 | ......__ | 1 | 75 |
| MIMAT0022494 | hsa-miR-5701 | 6 | ......__ | 1 | 75 |
| MIMAT0022300 | hsa-miR-5590-3p | 1 | _......_ | 6 | 75 |
| MIMAT0021756 | aca-miR-137b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0021754 | aca-miR-137a | 6 | ......__ | 1 | 75 |
| MIMAT0021500 | asu-miR-234-3p | 6 | ......__ | 1 | 75 |
| MIMAT0021073 | gma-miR4372b | 2 | _......_ | 7 | 75 |
| MIMAT0020151 | dme-miR-4943-5p | 7 | _......_ | 2 | 75 |
| MIMAT0020084 | bfl-miR-4858-5p | 8 | ......__ | 3 | 75 |
| MIMAT0019467 | pma-miR-137-3p | 6 | ......__ | 1 | 75 |
| MIMAT0018423 | nlo-miR-137 | 6 | ......__ | 1 | 75 |
| MIMAT0018397 | ngi-miR-137 | 6 | ......__ | 1 | 75 |
| MIMAT0018331 | gma-miR4411 | 6 | ......__ | 1 | 75 |
| MIMAT0018243 | gma-miR1520e | 1 | ......__ | 6 | 75 |
| MIMAT0018844 | tca-miR-3876-5p | 8 | _......_ | 3 | 75 |
| MIMAT0018062 | dme-miR-3644-3p | 2 | __...... | 7 | 75 |
| MIMAT0016809 | cin-miR-4191-5p | 8 | __...... | 3 | 75 |
| MIMAT0015759 | ppy-miR-137 | 6 | ......__ | 1 | 75 |
| MIMAT0015660 | nvi-miR-137 | 6 | ......__ | 1 | 75 |
| MIMAT0017735 | ath-miR773b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0015606 | bmo-miR-3402 | 3 | ......__ | 8 | 75 |
| MIMAT0015559 | bmo-miR-3372-5p | 6 | _......_ | 1 | 75 |
| MIMAT0014543 | tgu-miR-137-3p | 6 | ......__ | 1 | 75 |
| MIMAT0014283 | aae-miR-2940-5p | 8 | __...... | 3 | 75 |
| MIMAT0014118 | bma-miR-234 | 6 | ......__ | 1 | 75 |
| MIMAT0012953 | eca-miR-137 | 6 | ......__ | 1 | 75 |
| MIMAT0013401 | mtr-miR2635 | 7 | ......__ | 2 | 75 |
| MIMAT0013400 | mtr-miR2634 | 6 | _......_ | 1 | 75 |
| MIMAT0012513 | dsi-miR-982c | 6 | ......__ | 1 | 75 |
| MIMAT0012500 | dsi-miR-1011 | 6 | ......__ | 1 | 75 |
| MIMAT0011694 | ppc-miR-234 | 6 | ......__ | 1 | 75 |
| MIMAT0010014 | ppt-miR2077 | 3 | __...... | 8 | 75 |
| MIMAT0009152 | bmo-miR-137 | 6 | ......__ | 1 | 75 |
| MIMAT0009231 | bta-miR-137 | 6 | ......__ | 1 | 75 |
| MIMAT0008373 | tca-miR-137-3p | 6 | ......__ | 1 | 75 |
| MIMAT0008033 | ptr-miR-137 | 6 | ......__ | 1 | 75 |
| MIMAT0006702 | cfa-miR-137 | 6 | ......__ | 1 | 75 |
| MIMAT0006193 | mml-miR-137-3p | 6 | ......__ | 1 | 75 |
| MIMAT0007396 | gma-miR1533 | 3 | _......_ | 8 | 75 |
| MIMAT0007395 | gma-miR1520c | 3 | ......__ | 8 | 75 |
| MIMAT0007338 | gga-miR-1460 | 8 | _......_ | 3 | 75 |
| MIMAT0006878 | oan-miR-137b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0006838 | oan-miR-137a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0005024 | dme-miR-1011-3p | 6 | ......__ | 1 | 75 |
| MIMAT0004421 | ame-miR-137 | 6 | ......__ | 1 | 75 |
| MIMAT0002933 | tni-miR-137 | 6 | ......__ | 1 | 75 |
| MIMAT0002932 | fru-miR-137 | 6 | ......__ | 1 | 75 |
| MIMAT0001834 | dre-miR-137-3p | 6 | ......__ | 1 | 75 |
| MIMAT0020922 | gma-miR396a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0000981 | osa-miR397b | 6 | ......__ | 1 | 75 |
| MIMAT0000843 | rno-miR-137-3p | 6 | ......__ | 1 | 75 |
| MIMAT0000499 | cbr-miR-234 | 6 | ......__ | 1 | 75 |
| MIMAT0000429 | hsa-miR-137 | 6 | ......__ | 1 | 75 |
| MIMAT0000289 | cel-miR-234-3p | 6 | ......__ | 1 | 75 |
| MIMAT0000149 | mmu-miR-137-3p | 6 | ......__ | 1 | 75 |
