| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | caatagcg | 8 | ||
| MIMAT0035414 | nve-miR-9453 | 8 | _....... | 2 | 87 |
| MIMAT0033906 | atr-miR8614 | 1 | ......._ | 7 | 87 |
| MIMAT0028672 | mdo-miR-7332-5p | 1 | ......._ | 7 | 87 |
| MIMAT0005259 | smo-miR1102 | 8 | ......._ | 2 | 87 |
| MIMAT0037141 | ata-miR390-3p | 6 | __...... | 1 | 75 |
| MIMAT0036712 | oha-miR-138-2-3p | 6 | _......_ | 1 | 75 |
| MIMAT0035480 | sly-miR390b-3p | 6 | __...... | 1 | 75 |
| MIMAT0035468 | sly-miR390a-3p | 6 | __...... | 1 | 75 |
| MIMAT0035315 | gsa-miR-31-3p | 6 | __...... | 1 | 75 |
| MIMAT0033788 | pxy-miR-3286 | 8 | ......__ | 3 | 75 |
| MIMAT0033649 | sma-miR-8465-5p | 3 | _......_ | 8 | 75 |
| MIMAT0033242 | ppc-miR-8347-5p | 8 | _......_ | 3 | 75 |
| MIMAT0033046 | ppc-miR-8364n-3p | 2 | __...... | 7 | 75 |
| MIMAT0032961 | ppc-miR-8248-3p | 1 | _......_ | 6 | 75 |
| MIMAT0032353 | ssa-miR-138-3p | 6 | _......_ | 1 | 75 |
| MIMAT0031344 | stu-miR390-3p | 6 | __...... | 1 | 75 |
| MIMAT0030233 | bdi-miR7746-3p | 8 | ......__ | 3 | 75 |
| MIMAT0030204 | bdi-miR7717c-5p | 8 | _......_ | 3 | 75 |
| MIMAT0030020 | hsa-miR-7705 | 1 | _......_ | 6 | 75 |
| MIMAT0029325 | lja-miR390b-3p | 6 | __...... | 1 | 75 |
| MIMAT0029323 | lja-miR390a-3p | 6 | __...... | 1 | 75 |
| MIMAT0029261 | mes-miR390 | 6 | __...... | 1 | 75 |
| MIMAT0027552 | hsa-miR-6826-5p | 2 | ......__ | 7 | 75 |
| MIMAT0023328 | hco-miR-5891 | 1 | __...... | 6 | 75 |
| MIMAT0022387 | ath-miR5628 | 3 | _......_ | 8 | 75 |
| MIMAT0022156 | osa-miR5522 | 3 | ......__ | 8 | 75 |
| MIMAT0021758 | aca-miR-138-1-3p | 6 | _......_ | 1 | 75 |
| MIMAT0027043 | bdi-miR390a-3p | 6 | __...... | 1 | 75 |
| MIMAT0020995 | gma-miR390c | 6 | __...... | 1 | 75 |
| MIMAT0016572 | cin-miR-4041-3p | 1 | ......__ | 6 | 75 |
| MIMAT0016550 | cin-miR-4030-3p | 6 | __...... | 1 | 75 |
| MIMAT0016473 | cin-miR-4006b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0016136 | ppy-miR-936 | 2 | ......__ | 7 | 75 |
| MIMAT0015643 | mmu-miR-3472 | 2 | _......_ | 7 | 75 |
| MIMAT0017653 | aly-miR862-5p | 3 | ......__ | 8 | 75 |
| MIMAT0017650 | aly-miR860-3p | 2 | ......__ | 7 | 75 |
| MIMAT0017536 | aly-miR390b-3p | 6 | __...... | 1 | 75 |
| MIMAT0017534 | aly-miR390a-3p | 6 | __...... | 1 | 75 |
| MIMAT0015472 | bmo-miR-3286-5p | 8 | ......__ | 3 | 75 |
| MIMAT0031021 | tgu-miR-138-2-3p | 6 | _......_ | 1 | 75 |
| MIMAT0014426 | cqu-miR-31-3p | 7 | _......_ | 2 | 75 |
| MIMAT0015367 | zma-miR390b-3p | 6 | __...... | 1 | 75 |
| MIMAT0015333 | zma-miR390a-3p | 6 | __...... | 1 | 75 |
| MIMAT0012871 | hvt-miR-H16-3p | 3 | _......_ | 8 | 75 |
| MIMAT0012733 | mdv2-miR-M32-3p | 2 | _......_ | 7 | 75 |
| MIMAT0012308 | dps-miR-2520 | 1 | _......_ | 6 | 75 |
| MIMAT0013779 | sme-miR-31b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0009817 | nve-miR-2046-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032087 | dvi-miR-31a-3p | 6 | __...... | 1 | 75 |
| MIMAT0007360 | gma-miR390a-3p | 6 | __...... | 1 | 75 |
| MIMAT0007220 | oan-miR-138-3p | 6 | _......_ | 1 | 75 |
| MIMAT0004307 | ath-miR862-5p | 3 | ......__ | 8 | 75 |
| MIMAT0004304 | ath-miR860 | 2 | ......__ | 7 | 75 |
| MIMAT0011413 | sme-miR-31b-1-3p | 8 | _......_ | 3 | 75 |
| MIMAT0022907 | ptc-miR390d-3p | 6 | __...... | 1 | 75 |
| MIMAT0031973 | dre-miR-138-3p | 6 | _......_ | 1 | 75 |
| MIMAT0022888 | osa-miR390-3p | 6 | __...... | 1 | 75 |
| MIMAT0031903 | ath-miR390b-3p | 6 | __...... | 1 | 75 |
| MIMAT0031902 | ath-miR390a-3p | 6 | __...... | 1 | 75 |
| MIMAT0017127 | rno-miR-138-2-3p | 6 | _......_ | 1 | 75 |
| MIMAT0004596 | hsa-miR-138-2-3p | 6 | _......_ | 1 | 75 |
| MIMAT0020834 | dme-miR-31a-3p | 6 | __...... | 1 | 75 |
| MIMAT0020336 | cel-miR-245-5p | 6 | _......_ | 1 | 75 |
| MIMAT0016987 | mmu-miR-138-2-3p | 6 | _......_ | 1 | 75 |
