| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cacataac | 8 | ||
| MIMAT0016951 | rlcv-miR-rL1-27-3p | 1 | ........ | 8 | 100 |
| MIMAT0035435 | sly-miR9469-5p | 2 | ......._ | 8 | 87 |
| MIMAT0034011 | gra-miR8652 | 8 | ......._ | 2 | 87 |
| MIMAT0028667 | mdo-miR-7330-3p | 8 | ......._ | 2 | 87 |
| MIMAT0025232 | ptc-miR6431 | 7 | ......._ | 1 | 87 |
| MIMAT0024781 | nta-miR6164b | 2 | ......._ | 8 | 87 |
| MIMAT0024780 | nta-miR6164a | 2 | ......._ | 8 | 87 |
| MIMAT0012395 | dps-miR-2566a-3p | 2 | _....... | 8 | 87 |
| MIMAT0017347 | mmu-miR-669o-3p | 1 | _....... | 7 | 87 |
| MIMAT0017251 | mmu-miR-669a-3-3p | 1 | _....... | 7 | 87 |
| MIMAT0017243 | mmu-miR-669a-3p | 1 | _....... | 7 | 87 |
| MIMAT0003420 | ebv-miR-BART10-3p | 2 | _....... | 8 | 87 |
| MIMAT0037236 | ata-miR9863b-5p | 7 | __...... | 2 | 75 |
| MIMAT0037104 | ata-miR9863a-5p | 7 | __...... | 2 | 75 |
| MIMAT0036931 | oha-miR-455-5p | 6 | ......__ | 1 | 75 |
| MIMAT0036241 | chi-miR-455-5p | 6 | ......__ | 1 | 75 |
| MIMAT0035486 | bdi-miR9480b | 6 | ......__ | 1 | 75 |
| MIMAT0035485 | bdi-miR9480a | 6 | ......__ | 1 | 75 |
| MIMAT0035090 | efu-miR-9336 | 6 | ......__ | 1 | 75 |
| MIMAT0034665 | eca-miR-9116 | 7 | _......_ | 2 | 75 |
| MIMAT0033766 | pxy-miR-8524-3p | 6 | ......__ | 1 | 75 |
| MIMAT0033347 | str-miR-72-3p | 7 | __...... | 2 | 75 |
| MIMAT0033174 | ppc-miR-8318-5p | 6 | __...... | 1 | 75 |
| MIMAT0033116 | ppc-miR-8299-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033072 | ppc-miR-8284-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032947 | ppc-miR-8243-3p | 1 | ......__ | 6 | 75 |
| MIMAT0032643 | ssa-miR-455-5p | 6 | ......__ | 1 | 75 |
| MIMAT0030371 | ptc-miR7812 | 8 | __...... | 3 | 75 |
| MIMAT0030274 | bdi-miR7764-5p | 1 | __...... | 6 | 75 |
| MIMAT0029513 | ipu-miR-455b | 6 | ......__ | 1 | 75 |
| MIMAT0029512 | ipu-miR-455a | 6 | ......__ | 1 | 75 |
| MIMAT0028940 | mdo-miR-7399-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028886 | mdo-miR-7394a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028187 | dev-miR-D14-3p | 8 | __...... | 3 | 75 |
| MIMAT0026301 | ccr-miR-455 | 6 | ......__ | 1 | 75 |
| MIMAT0024330 | mml-miR-4803 | 3 | _......_ | 8 | 75 |
| MIMAT0023964 | cgr-miR-455-5p | 6 | ......__ | 1 | 75 |
| MIMAT0022607 | ola-miR-455-5p | 6 | ......__ | 1 | 75 |
| MIMAT0022837 | mmu-miR-299b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0022274 | hsa-miR-5580-3p | 1 | ......__ | 6 | 75 |
| MIMAT0021964 | aca-miR-455-5p | 6 | ......__ | 1 | 75 |
| MIMAT0021578 | asu-miR-5358a-5p | 8 | __...... | 3 | 75 |
| MIMAT0020501 | bfl-miR-4905 | 6 | ......__ | 1 | 75 |
| MIMAT0019983 | hsa-miR-4803 | 3 | _......_ | 8 | 75 |
| MIMAT0019960 | hsa-miR-4789-3p | 3 | ......__ | 8 | 75 |
| MIMAT0019252 | oar-miR-299-3p | 6 | ......__ | 1 | 75 |
| MIMAT0019037 | hsa-miR-4501 | 6 | ......__ | 1 | 75 |
| MIMAT0018288 | gma-miR4381 | 6 | ......__ | 1 | 75 |
| MIMAT0018640 | tca-miR-3809-5p | 3 | __...... | 8 | 75 |
| MIMAT0018601 | ame-miR-3716a | 6 | ......__ | 1 | 75 |
| MIMAT0018047 | vvi-miR3637-5p | 8 | _......_ | 3 | 75 |
| MIMAT0018044 | vvi-miR3635-3p | 7 | _......_ | 2 | 75 |
| MIMAT0016835 | cin-miR-4214-5p | 6 | ......__ | 1 | 75 |
| MIMAT0016780 | cin-miR-4172-3p | 8 | _......_ | 3 | 75 |
| MIMAT0016541 | cin-miR-4025-5p | 7 | ......__ | 2 | 75 |
| MIMAT0017834 | rno-miR-299b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0015899 | ppy-miR-455-5p | 6 | ......__ | 1 | 75 |
| MIMAT0015814 | ppy-miR-299-3p | 6 | ......__ | 1 | 75 |
| MIMAT0014891 | mmu-miR-466p-5p | 6 | ......__ | 1 | 75 |
| MIMAT0014890 | mmu-miR-669p-3p | 1 | __...... | 6 | 75 |
| MIMAT0014655 | tgu-miR-455-5p | 6 | ......__ | 1 | 75 |
| MIMAT0022957 | ssc-miR-455-5p | 6 | ......__ | 1 | 75 |
| MIMAT0013130 | eca-miR-299 | 6 | ......__ | 1 | 75 |
| MIMAT0012752 | mdo-miR-455-5p | 6 | ......__ | 1 | 75 |
| MIMAT0013682 | bmo-miR-2786 | 8 | __...... | 3 | 75 |
| MIMAT0012307 | dps-miR-2519 | 7 | ......__ | 2 | 75 |
| MIMAT0011386 | sbi-miR821b | 8 | __...... | 3 | 75 |
| MIMAT0011314 | dre-miR-2193 | 6 | ......__ | 1 | 75 |
| MIMAT0011302 | dre-miR-455-2-5p | 7 | ......__ | 2 | 75 |
| MIMAT0006603 | cfa-miR-455 | 6 | ......__ | 1 | 75 |
| MIMAT0006339 | mml-miR-455-5p | 6 | ......__ | 1 | 75 |
| MIMAT0006256 | mml-miR-299-3p | 6 | ......__ | 1 | 75 |
| MIMAT0007537 | gga-miR-1657 | 8 | ......__ | 3 | 75 |
| MIMAT0007490 | gga-miR-1622 | 1 | ......__ | 6 | 75 |
| MIMAT0005859 | mmu-miR-1198-5p | 6 | ......__ | 1 | 75 |
| MIMAT0005837 | mmu-miR-1187 | 6 | ......__ | 1 | 75 |
| MIMAT0005316 | rno-miR-455-5p | 6 | ......__ | 1 | 75 |
| MIMAT0005278 | rno-miR-466b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0004309 | ath-miR863-5p | 6 | _......_ | 1 | 75 |
| MIMAT0003835 | bta-miR-455-5p | 6 | ......__ | 1 | 75 |
| MIMAT0003641 | xtr-miR-455 | 6 | ......__ | 1 | 75 |
| MIMAT0003485 | mmu-miR-455-5p | 6 | ......__ | 1 | 75 |
| MIMAT0003364 | gga-miR-455-5p | 6 | ......__ | 1 | 75 |
| MIMAT0003150 | hsa-miR-455-5p | 6 | ......__ | 1 | 75 |
| MIMAT0003162 | rno-miR-1-5p | 2 | ......__ | 7 | 75 |
| MIMAT0003029 | tni-miR-455 | 6 | ......__ | 1 | 75 |
| MIMAT0003028 | fru-miR-455 | 6 | ......__ | 1 | 75 |
| MIMAT0004759 | mmu-miR-466a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0001879 | dre-miR-455-5p | 6 | ......__ | 1 | 75 |
| MIMAT0017167 | rno-miR-299a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0000687 | hsa-miR-299-3p | 6 | ......__ | 1 | 75 |
| MIMAT0004577 | mmu-miR-299a-3p | 6 | ......__ | 1 | 75 |
