| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cacatcac | 8 | ||
| MIMAT0009204 | ebv-miR-BART4-3p | 1 | ........ | 8 | 100 |
| MIMAT0036939 | oha-miR-499-3p | 2 | _....... | 8 | 87 |
| MIMAT0036393 | gma-miR5670b | 1 | ......._ | 7 | 87 |
| MIMAT0035603 | dvi-miR-989-3p | 8 | _....... | 2 | 87 |
| MIMAT0034844 | efu-miR-9235a | 8 | ......._ | 2 | 87 |
| MIMAT0033863 | atr-miR8579 | 7 | _....... | 1 | 87 |
| MIMAT0032662 | ssa-miR-499b-3p | 2 | _....... | 8 | 87 |
| MIMAT0032660 | ssa-miR-499a-3p | 2 | _....... | 8 | 87 |
| MIMAT0029671 | cbn-miR-7629 | 8 | _....... | 2 | 87 |
| MIMAT0027340 | tgu-miR-499-3p | 2 | _....... | 8 | 87 |
| MIMAT0023313 | osa-miR5837.2 | 8 | _....... | 2 | 87 |
| MIMAT0023120 | mtr-miR5742 | 2 | ......._ | 8 | 87 |
| MIMAT0022548 | ola-miR-499 | 2 | _....... | 8 | 87 |
| MIMAT0021981 | aca-miR-499-3p | 2 | _....... | 8 | 87 |
| MIMAT0019898 | hsa-miR-499b-3p | 2 | _....... | 8 | 87 |
| MIMAT0018823 | tca-miR-989-3p | 8 | _....... | 2 | 87 |
| MIMAT0018511 | ame-miR-989 | 8 | _....... | 2 | 87 |
| MIMAT0017922 | aly-miR4233 | 1 | ......._ | 7 | 87 |
| MIMAT0015921 | ppy-miR-499-3p | 2 | _....... | 8 | 87 |
| MIMAT0015540 | bmo-miR-3354 | 2 | ......._ | 8 | 87 |
| MIMAT0014885 | mmu-miR-466o-5p | 7 | ......._ | 1 | 87 |
| MIMAT0014389 | cqu-miR-989 | 8 | _....... | 2 | 87 |
| MIMAT0014239 | aae-miR-989 | 8 | _....... | 2 | 87 |
| MIMAT0017373 | ssc-miR-499-3p | 2 | _....... | 8 | 87 |
| MIMAT0013109 | eca-miR-499-3p | 2 | _....... | 8 | 87 |
| MIMAT0026943 | mdo-miR-499-3p | 1 | _....... | 7 | 87 |
| MIMAT0012497 | dsi-miR-989 | 8 | _....... | 2 | 87 |
| MIMAT0012381 | dps-miR-2559-3p | 2 | ......._ | 8 | 87 |
| MIMAT0012218 | dps-miR-989 | 8 | _....... | 2 | 87 |
| MIMAT0008172 | ptr-miR-499 | 2 | _....... | 8 | 87 |
| MIMAT0006362 | mml-miR-499-3p | 2 | _....... | 8 | 87 |
| MIMAT0006950 | oan-miR-499-3p | 2 | _....... | 8 | 87 |
| MIMAT0005529 | aga-miR-989 | 8 | _....... | 2 | 87 |
| MIMAT0005279 | rno-miR-466c-5p | 8 | _....... | 2 | 87 |
| MIMAT0005506 | dme-miR-989-3p | 8 | _....... | 2 | 87 |
| MIMAT0004877 | mmu-miR-466c-5p | 7 | ......._ | 1 | 87 |
| MIMAT0004875 | mmu-miR-466b-5p | 7 | ......._ | 1 | 87 |
| MIMAT0026684 | mdo-miR-383-3p | 2 | ......._ | 8 | 87 |
| MIMAT0032009 | dre-miR-499-3p | 2 | _....... | 8 | 87 |
| MIMAT0017227 | rno-miR-499-3p | 2 | _....... | 8 | 87 |
| MIMAT0026634 | gga-miR-499-3p | 2 | _....... | 8 | 87 |
| MIMAT0004772 | hsa-miR-499a-3p | 2 | _....... | 8 | 87 |
| MIMAT0027669 | hsa-miR-6884-3p | 1 | .c...... | 8 | 87 |
| MIMAT0012617 | bmo-miR-2739 | 8 | ......t. | 1 | 87 |
| MIMAT0007705 | gga-miR-1791-3p | 8 | ......g. | 1 | 87 |
| MIMAT0037261 | ath-miR8167f | 7 | ......__ | 2 | 75 |
| MIMAT0037260 | ath-miR8167e | 7 | ......__ | 2 | 75 |
| MIMAT0037259 | ath-miR8167d | 7 | ......__ | 2 | 75 |
| MIMAT0037217 | ata-miR9776-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036262 | chi-miR-499-3p | 3 | _......_ | 8 | 75 |
| MIMAT0035751 | rno-miR-5132-3p | 8 | _......_ | 3 | 75 |
| MIMAT0035503 | bdi-miR9494 | 3 | __...... | 8 | 75 |
| MIMAT0035265 | gsa-miR-219-3p | 7 | ......__ | 2 | 75 |
| MIMAT0034597 | eca-miR-9053 | 3 | ......__ | 8 | 75 |
| MIMAT0034085 | gra-miR8675c | 8 | __...... | 3 | 75 |
| MIMAT0034084 | gra-miR8675b | 8 | __...... | 3 | 75 |
| MIMAT0033858 | atr-miR8575 | 7 | ......__ | 2 | 75 |
| MIMAT0033595 | sma-miR-8443-3p | 2 | ......__ | 7 | 75 |
| MIMAT0033214 | ppc-miR-8335-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032776 | ath-miR8177 | 8 | __...... | 3 | 75 |
| MIMAT0032765 | ath-miR8167c | 7 | ......__ | 2 | 75 |
| MIMAT0032764 | ath-miR8167b | 7 | ......__ | 2 | 75 |
| MIMAT0032763 | ath-miR8167a | 7 | ......__ | 2 | 75 |
| MIMAT0032670 | ssa-miR-723-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032658 | ssa-miR-489-3p | 3 | _......_ | 8 | 75 |
| MIMAT0031734 | bbe-miR-4856a-3p | 8 | __...... | 3 | 75 |
| MIMAT0030955 | stu-miR8041b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0030954 | stu-miR8041a-3p | 7 | _......_ | 2 | 75 |
| MIMAT0030735 | prd-miR-7938-3p | 7 | __...... | 2 | 75 |
| MIMAT0030649 | prd-miR-7911b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0030630 | prd-miR-7579-5p | 1 | __...... | 6 | 75 |
| MIMAT0030628 | prd-miR-7908-5p | 3 | __...... | 8 | 75 |
| MIMAT0030618 | prd-miR-7903-5p | 8 | _......_ | 3 | 75 |
| MIMAT0030455 | prd-miR-100-3p | 1 | ......__ | 6 | 75 |
| MIMAT0030138 | bdi-miR7710-3p | 8 | _......_ | 3 | 75 |
| MIMAT0029962 | osa-miR7695-3p | 8 | __...... | 3 | 75 |
| MIMAT0029520 | ipu-miR-489 | 3 | _......_ | 8 | 75 |
| MIMAT0028719 | mdo-miR-7353-3p | 1 | _......_ | 6 | 75 |
| MIMAT0028167 | hcmv-miR-US29-5p | 8 | ......__ | 3 | 75 |
| MIMAT0026398 | sbi-miR5565g-5p | 3 | ......__ | 8 | 75 |
| MIMAT0026308 | ccr-miR-489 | 3 | _......_ | 8 | 75 |
| MIMAT0028122 | hsa-miR-7112-3p | 3 | __...... | 8 | 75 |
| MIMAT0028087 | mmu-miR-7090-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027701 | mmu-miR-6900-3p | 8 | __...... | 3 | 75 |
| MIMAT0024934 | hme-miR-11 | 1 | __...... | 6 | 75 |
| MIMAT0024814 | hvu-miR6189 | 8 | __...... | 3 | 75 |
| MIMAT0024431 | mse-miR-989 | 8 | __...... | 3 | 75 |
| MIMAT0024422 | mse-miR-11 | 1 | __...... | 6 | 75 |
| MIMAT0023973 | cgr-miR-499-3p | 3 | _......_ | 8 | 75 |
| MIMAT0023654 | bna-miR6034 | 8 | _......_ | 3 | 75 |
| MIMAT0023253 | osa-miR5788 | 8 | ......__ | 3 | 75 |
| MIMAT0023154 | mtr-miR2593d | 3 | _......_ | 8 | 75 |
| MIMAT0023148 | mtr-miR2593e | 3 | _......_ | 8 | 75 |
| MIMAT0023017 | bra-miR5719 | 8 | __...... | 3 | 75 |
| MIMAT0022151 | osa-miR5517 | 3 | __...... | 8 | 75 |
| MIMAT0021396 | rmi-miR-5323 | 6 | ......__ | 1 | 75 |
| MIMAT0021274 | mtr-miR5265 | 8 | __...... | 3 | 75 |
| MIMAT0020721 | bdi-miR5176-3p | 7 | __...... | 2 | 75 |
| MIMAT0022988 | mmu-miR-5132-3p | 7 | _......_ | 2 | 75 |
| MIMAT0019914 | hsa-miR-4764-5p | 8 | ......__ | 3 | 75 |
| MIMAT0018490 | csi-miR3949 | 6 | _......_ | 1 | 75 |
| MIMAT0018274 | gma-miR4371b | 8 | __...... | 3 | 75 |
| MIMAT0018273 | gma-miR4371a | 8 | __...... | 3 | 75 |
| MIMAT0019225 | hsa-miR-3913-3p | 3 | _......_ | 8 | 75 |
| MIMAT0018855 | tca-miR-11-3p | 1 | __...... | 6 | 75 |
| MIMAT0018700 | tca-miR-3834-5p | 6 | _......_ | 1 | 75 |
| MIMAT0018506 | ame-miR-11 | 1 | __...... | 6 | 75 |
| MIMAT0018123 | pab-miR950-5p | 2 | ......__ | 7 | 75 |
| MIMAT0016829 | cin-miR-4208-3p | 6 | _......_ | 1 | 75 |
| MIMAT0016817 | cin-miR-4198-5p | 8 | _......_ | 3 | 75 |
| MIMAT0016755 | cin-miR-4151-3p | 8 | __...... | 3 | 75 |
| MIMAT0016601 | cin-miR-4056-5p | 8 | _......_ | 3 | 75 |
| MIMAT0016346 | ahy-miR3520-5p | 8 | __...... | 3 | 75 |
| MIMAT0016018 | ppy-miR-576-3p | 8 | ......__ | 3 | 75 |
| MIMAT0017642 | aly-miR856-3p | 6 | _......_ | 1 | 75 |
| MIMAT0015627 | bmo-miR-989b | 8 | __...... | 3 | 75 |
| MIMAT0015608 | bmo-miR-3347b | 2 | _......_ | 7 | 75 |
| MIMAT0015533 | bmo-miR-3347a | 2 | _......_ | 7 | 75 |
| MIMAT0015512 | bmo-miR-3325 | 8 | __...... | 3 | 75 |
| MIMAT0015485 | bmo-miR-3297-5p | 2 | ......__ | 7 | 75 |
| MIMAT0015456 | bmo-miR-3271 | 3 | _......_ | 8 | 75 |
| MIMAT0014855 | mmu-miR-3073a-3p | 7 | _......_ | 2 | 75 |
| MIMAT0014407 | cqu-miR-11-3p | 1 | __...... | 6 | 75 |
| MIMAT0014242 | aae-miR-11-3p | 1 | __...... | 6 | 75 |
| MIMAT0014098 | bma-miR-2c | 1 | __...... | 6 | 75 |
| MIMAT0013783 | bmo-miR-2851 | 7 | __...... | 2 | 75 |
| MIMAT0013602 | bmo-miR-11-3p | 1 | __...... | 6 | 75 |
| MIMAT0012633 | bmo-miR-989a | 8 | __...... | 3 | 75 |
| MIMAT0011881 | bta-miR-2346 | 8 | _......_ | 3 | 75 |
| MIMAT0011819 | bta-miR-2307 | 7 | __...... | 2 | 75 |
| MIMAT0011560 | crm-miR-84-3p | 1 | _......_ | 6 | 75 |
| MIMAT0011271 | sme-miR-2171 | 6 | __...... | 1 | 75 |
| MIMAT0010073 | osa-miR2105 | 8 | __...... | 3 | 75 |
| MIMAT0009816 | nve-miR-2046-5p | 1 | __...... | 6 | 75 |
| MIMAT0009790 | nve-miR-2034-5p | 7 | _......_ | 2 | 75 |
| MIMAT0009123 | dya-miR-11 | 1 | __...... | 6 | 75 |
| MIMAT0009010 | dwi-miR-11 | 1 | __...... | 6 | 75 |
| MIMAT0008916 | dvi-miR-11-3p | 1 | __...... | 6 | 75 |
| MIMAT0008865 | dsi-miR-11 | 1 | __...... | 6 | 75 |
| MIMAT0008788 | dse-miR-11 | 1 | __...... | 6 | 75 |
| MIMAT0008737 | dpe-miR-11 | 1 | __...... | 6 | 75 |
| MIMAT0008679 | dmo-miR-11 | 1 | __...... | 6 | 75 |
| MIMAT0008572 | dgr-miR-11 | 1 | __...... | 6 | 75 |
| MIMAT0008500 | der-miR-11 | 1 | __...... | 6 | 75 |
| MIMAT0008472 | dan-miR-11 | 1 | __...... | 6 | 75 |
| MIMAT0008250 | ptr-miR-576 | 8 | ......__ | 3 | 75 |
| MIMAT0007856 | aga-miR-11 | 1 | __...... | 6 | 75 |
| MIMAT0026901 | mml-miR-592-3p | 2 | __...... | 7 | 75 |
| MIMAT0006437 | mml-miR-576-3p | 8 | ......__ | 3 | 75 |
| MIMAT0007323 | oan-miR-1419g-3p | 6 | _......_ | 1 | 75 |
| MIMAT0009179 | oan-miR-1421k-3p | 3 | __...... | 8 | 75 |
| MIMAT0007265 | oan-miR-1421af-3p | 3 | __...... | 8 | 75 |
| MIMAT0007263 | oan-miR-1419e-3p | 6 | _......_ | 1 | 75 |
| MIMAT0007260 | oan-miR-1421ad-3p | 3 | __...... | 8 | 75 |
| MIMAT0004879 | mmu-miR-466e-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012095 | sme-miR-2d-5p | 2 | _......_ | 7 | 75 |
| MIMAT0017254 | mmu-miR-499-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017234 | mmu-miR-592-3p | 2 | __...... | 7 | 75 |
| MIMAT0004796 | hsa-miR-576-3p | 8 | ......__ | 3 | 75 |
| MIMAT0001215 | dps-miR-11 | 1 | __...... | 6 | 75 |
| MIMAT0000116 | dme-miR-11-3p | 1 | __...... | 6 | 75 |
| MIMAT0020308 | cel-miR-43-5p | 2 | _......_ | 7 | 75 |
