| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | caccaac | 7 | ||
| MIMAT0025701 | gga-miR-6607-5p | 8 | ....... | 2 | 100 |
| MIMAT0017623 | aly-miR839-5p | 1 | ....... | 7 | 100 |
| MIMAT0007910 | sly-miR1918 | 8 | ....... | 2 | 100 |
| MIMAT0015263 | cin-miR-200-5p | 2 | ....... | 8 | 100 |
| MIMAT0037215 | ata-miR1432-3p | 6 | ......_ | 1 | 85 |
| MIMAT0036140 | chi-miR-329a-5p | 8 | ......_ | 3 | 85 |
| MIMAT0035592 | dvi-miR-971-3p | 6 | ......_ | 1 | 85 |
| MIMAT0035111 | efu-miR-9343 | 8 | _...... | 3 | 85 |
| MIMAT0034909 | efu-miR-490 | 1 | _...... | 6 | 85 |
| MIMAT0034876 | efu-miR-9257 | 6 | ......_ | 1 | 85 |
| MIMAT0034273 | psj-miR8788b-3p | 8 | _...... | 3 | 85 |
| MIMAT0034271 | psj-miR8788a-3p | 8 | _...... | 3 | 85 |
| MIMAT0034037 | gra-miR8666 | 6 | ......_ | 1 | 85 |
| MIMAT0033583 | sma-miR-8439-3p | 6 | ......_ | 1 | 85 |
| MIMAT0033032 | ppc-miR-8270-5p | 6 | _...... | 1 | 85 |
| MIMAT0030576 | prd-miR-9b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0030430 | hsa-miR-7855-5p | 6 | ......_ | 1 | 85 |
| MIMAT0029373 | lja-miR7546 | 6 | ......_ | 1 | 85 |
| MIMAT0028558 | mdo-miR-7288-5p | 7 | _...... | 2 | 85 |
| MIMAT0028543 | mdo-miR-7284-3p | 3 | _...... | 8 | 85 |
| MIMAT0028464 | mdo-miR-7249-5p | 6 | _...... | 1 | 85 |
| MIMAT0026055 | mdm-miR7124b | 1 | ......_ | 6 | 85 |
| MIMAT0026054 | mdm-miR7124a | 1 | ......_ | 6 | 85 |
| MIMAT0027768 | mmu-miR-6934-5p | 6 | ......_ | 1 | 85 |
| MIMAT0025834 | gga-miR-6563-5p | 6 | _...... | 1 | 85 |
| MIMAT0025070 | rno-miR-6331 | 8 | ......_ | 3 | 85 |
| MIMAT0025036 | sma-miR-2e-5p | 2 | _...... | 7 | 85 |
| MIMAT0024998 | hme-miR-971 | 6 | ......_ | 1 | 85 |
| MIMAT0024786 | hbr-miR6168 | 8 | ......_ | 3 | 85 |
| MIMAT0024686 | nta-miR171a | 8 | ......_ | 3 | 85 |
| MIMAT0023608 | stu-miR6025 | 2 | _...... | 7 | 85 |
| MIMAT0023606 | nta-miR6025a | 2 | _...... | 7 | 85 |
| MIMAT0023080 | tur-miR-133-5p | 7 | _...... | 2 | 85 |
| MIMAT0022467 | gma-miR5679 | 6 | ......_ | 1 | 85 |
| MIMAT0022443 | ath-miR5665 | 6 | ......_ | 1 | 85 |
| MIMAT0021683 | sbi-miR5385 | 3 | ......_ | 8 | 85 |
| MIMAT0021407 | rmi-miR-5334 | 7 | _...... | 2 | 85 |
| MIMAT0020555 | osa-miR5073 | 8 | ......_ | 3 | 85 |
| MIMAT0020519 | ath-miR5015 | 6 | ......_ | 1 | 85 |
| MIMAT0018748 | tca-miR-9d-5p | 8 | ......_ | 3 | 85 |
| MIMAT0018544 | ame-miR-971 | 6 | ......_ | 1 | 85 |
| MIMAT0016577 | cin-miR-4044-5p | 7 | _...... | 2 | 85 |
| MIMAT0016417 | cin-miR-375-5p | 8 | _...... | 3 | 85 |
| MIMAT0016294 | sja-miR-2e-5p | 2 | _...... | 7 | 85 |
| MIMAT0015463 | bmo-miR-3278 | 6 | ......_ | 1 | 85 |
| MIMAT0014745 | api-miR-971 | 6 | ......_ | 1 | 85 |
| MIMAT0014672 | hma-miR-3005 | 6 | ......_ | 1 | 85 |
| MIMAT0015332 | zma-miR171n-5p | 8 | ......_ | 3 | 85 |
| MIMAT0013580 | cte-miR-2711 | 6 | ......_ | 1 | 85 |
| MIMAT0012226 | dps-miR-971-3p | 6 | ......_ | 1 | 85 |
| MIMAT0011555 | crm-miR-79-5p | 8 | ......_ | 3 | 85 |
| MIMAT0019165 | spu-miR-2002-5p | 3 | _...... | 8 | 85 |
| MIMAT0032062 | dvi-miR-133-5p | 7 | _...... | 2 | 85 |
| MIMAT0007924 | sly-miR171c | 8 | ......_ | 3 | 85 |
| MIMAT0015259 | cin-miR-133-5p | 6 | _...... | 1 | 85 |
| MIMAT0005360 | tae-miR1125 | 2 | _...... | 7 | 85 |
| MIMAT0005489 | dme-miR-973-5p | 8 | _...... | 3 | 85 |
| MIMAT0005487 | dme-miR-971-3p | 6 | ......_ | 1 | 85 |
| MIMAT0004387 | cre-miR906-5p | 8 | _...... | 3 | 85 |
| MIMAT0004261 | ath-miR839-5p | 2 | _...... | 7 | 85 |
| MIMAT0012128 | sme-miR-277d-5p | 6 | _...... | 1 | 85 |
| MIMAT0006784 | ptc-miR394b-3p | 8 | _...... | 3 | 85 |
| MIMAT0006783 | ptc-miR394a-3p | 8 | _...... | 3 | 85 |
| MIMAT0015198 | zma-miR171c-5p | 8 | ......_ | 3 | 85 |
| MIMAT0017191 | mghv-miR-M1-8-3p | 3 | _...... | 8 | 85 |
| MIMAT0017138 | rno-miR-181a-2-3p | 3 | ......_ | 8 | 85 |
| MIMAT0020322 | cel-miR-79-5p | 8 | ......_ | 3 | 85 |
