| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cacggcg | 7 | ||
| MIMAT0025633 | gga-miR-6564-5p | 7 | ....... | 1 | 100 |
| MIMAT0024862 | mmu-miR-6241 | 1 | ....... | 7 | 100 |
| MIMAT0019630 | pma-miR-4597 | 8 | ....... | 2 | 100 |
| MIMAT0013964 | bhv1-miR-B3 | 2 | ....... | 8 | 100 |
| MIMAT0034797 | efu-miR-9209d | 8 | ......_ | 3 | 85 |
| MIMAT0032878 | ppc-miR-8222-5p | 1 | _...... | 6 | 85 |
| MIMAT0031528 | ppe-miR7122a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0030832 | prd-miR-7964b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0030828 | prd-miR-7964a-5p | 8 | ......_ | 3 | 85 |
| MIMAT0028449 | mmu-miR-7240-3p | 6 | _...... | 1 | 85 |
| MIMAT0020131 | cel-miR-4923b | 2 | _...... | 7 | 85 |
| MIMAT0018964 | hsa-miR-4445-3p | 1 | ......_ | 6 | 85 |
| MIMAT0017962 | ssc-miR-4332 | 1 | ......_ | 6 | 85 |
| MIMAT0015054 | hsa-miR-3177-3p | 3 | ......_ | 8 | 85 |
| MIMAT0014705 | hsv2-miR-H23-5p | 8 | ......_ | 3 | 85 |
| MIMAT0013694 | bmo-miR-2794 | 1 | _...... | 6 | 85 |
| MIMAT0012243 | dps-miR-92c-5p | 8 | ......_ | 3 | 85 |
| MIMAT0032060 | dvi-miR-310-5p | 8 | ......_ | 3 | 85 |
| MIMAT0017336 | gma-miR171b-5p | 1 | _...... | 6 | 85 |
| MIMAT0007124 | oan-miR-1382 | 6 | ......_ | 1 | 85 |
| MIMAT0004408 | rrv-miR-rR1-2 | 3 | _...... | 8 | 85 |
| MIMAT0020819 | dme-miR-92b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0020312 | cel-miR-53-3p | 1 | ......_ | 6 | 85 |
