| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cacggtc | 7 | ||
| MIMAT0023835 | cgr-miR-1973 | 8 | ....... | 2 | 100 |
| MIMAT0004756 | hcmv-miR-US33-3p | 2 | ....... | 8 | 100 |
| MIMAT0037283 | ame-miR-9879 | 8 | ......_ | 3 | 85 |
| MIMAT0036743 | oha-miR-15b-3p | 8 | _...... | 3 | 85 |
| MIMAT0036694 | oha-miR-132-5p | 6 | ......_ | 1 | 85 |
| MIMAT0035507 | bdi-miR9498 | 6 | _...... | 1 | 85 |
| MIMAT0034614 | eca-miR-9069 | 1 | ......_ | 6 | 85 |
| MIMAT0033222 | ppc-miR-8338-2-3p | 1 | ......_ | 6 | 85 |
| MIMAT0032334 | ssa-miR-132-4-5p | 6 | ......_ | 1 | 85 |
| MIMAT0032333 | ssa-miR-132-3-5p | 6 | ......_ | 1 | 85 |
| MIMAT0032331 | ssa-miR-132-5p | 6 | ......_ | 1 | 85 |
| MIMAT0031647 | bbe-miR-216-3p | 1 | ......_ | 6 | 85 |
| MIMAT0030513 | prd-miR-7878-3p | 1 | _...... | 6 | 85 |
| MIMAT0029964 | mtr-miR2587g | 8 | _...... | 3 | 85 |
| MIMAT0029405 | ipu-miR-132a | 6 | ......_ | 1 | 85 |
| MIMAT0028168 | hcmv-miR-US29-3p | 3 | ......_ | 8 | 85 |
| MIMAT0024792 | hbr-miR6172 | 8 | _...... | 3 | 85 |
| MIMAT0023758 | cgr-miR-132-5p | 6 | ......_ | 1 | 85 |
| MIMAT0023678 | ame-miR-6054 | 1 | ......_ | 6 | 85 |
| MIMAT0022684 | hvsa-miR-HSUR4-5p | 6 | ......_ | 1 | 85 |
| MIMAT0021791 | aca-miR-15b-3p | 8 | _...... | 3 | 85 |
| MIMAT0021745 | aca-miR-132-5p | 6 | ......_ | 1 | 85 |
| MIMAT0019682 | osa-miR812o-3p | 3 | _...... | 8 | 85 |
| MIMAT0018679 | tca-miR-3825-3p | 6 | ......_ | 1 | 85 |
| MIMAT0016816 | cin-miR-4197-5p | 1 | ......_ | 6 | 85 |
| MIMAT0017774 | esi-miR3467-3p | 2 | _...... | 7 | 85 |
| MIMAT0020948 | osa-miR2871a-5p | 6 | _...... | 1 | 85 |
| MIMAT0013257 | mtr-miR2587f | 8 | _...... | 3 | 85 |
| MIMAT0013256 | mtr-miR2587e | 8 | _...... | 3 | 85 |
| MIMAT0013255 | mtr-miR2587d | 8 | _...... | 3 | 85 |
| MIMAT0013254 | mtr-miR2587c | 8 | _...... | 3 | 85 |
| MIMAT0013253 | mtr-miR2587b | 8 | _...... | 3 | 85 |
| MIMAT0013252 | mtr-miR2587a | 8 | _...... | 3 | 85 |
| MIMAT0009697 | aqu-miR-2019-3p | 1 | ......_ | 6 | 85 |
| MIMAT0019150 | bfl-miR-216-3p | 1 | ......_ | 6 | 85 |
| MIMAT0009448 | hsa-miR-1973 | 6 | ......_ | 1 | 85 |
| MIMAT0026816 | mml-miR-132-5p | 6 | ......_ | 1 | 85 |
| MIMAT0026693 | mdo-miR-132-5p | 6 | ......_ | 1 | 85 |
| MIMAT0003403 | dre-miR-132-5p | 6 | ......_ | 1 | 85 |
| MIMAT0001303 | cbr-miR-360 | 7 | _...... | 2 | 85 |
| MIMAT0017123 | rno-miR-132-5p | 6 | ......_ | 1 | 85 |
| MIMAT0000702 | cel-miR-360-3p | 7 | _...... | 2 | 85 |
| MIMAT0004594 | hsa-miR-132-5p | 6 | ......_ | 1 | 85 |
