| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cacgttcc | 8 | ||
| MIMAT0013969 | bhv1-miR-B7 | 1 | ........ | 8 | 100 |
| MIMAT0037248 | ata-miR166c-5p | 7 | _....... | 1 | 87 |
| MIMAT0005544 | mcmv-miR-M23-2-5p | 8 | ......._ | 2 | 87 |
| MIMAT0028021 | mmu-miR-7058-3p | 1 | .t...... | 8 | 87 |
| MIMAT0016527 | cin-miR-4019-3p | 1 | .c...... | 8 | 87 |
| MIMAT0014441 | cqu-miR-1889-3p | 1 | ......a. | 8 | 87 |
| MIMAT0014234 | aae-miR-1889-3p | 1 | ......a. | 8 | 87 |
| MIMAT0011550 | crm-miR-52-3p | 1 | ......a. | 8 | 87 |
| MIMAT0020311 | cel-miR-52-3p | 1 | ......a. | 8 | 87 |
| MIMAT0035774 | tae-miR1137b-5p | 3 | __...... | 8 | 75 |
| MIMAT0035722 | rno-miR-1247-3p | 8 | __...... | 3 | 75 |
| MIMAT0034475 | eca-miR-8946 | 2 | ......__ | 7 | 75 |
| MIMAT0034148 | gra-miR8736 | 8 | __...... | 3 | 75 |
| MIMAT0033711 | pxy-miR-8499c | 2 | __...... | 7 | 75 |
| MIMAT0033670 | sma-miR-8474-3p | 6 | _......_ | 1 | 75 |
| MIMAT0030834 | prd-miR-7966b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0030487 | prd-miR-7871-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030386 | ptc-miR1444e | 7 | _......_ | 2 | 75 |
| MIMAT0030385 | ptc-miR1444d | 7 | _......_ | 2 | 75 |
| MIMAT0030202 | bdi-miR7734-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028359 | mml-miR-1247-3p | 8 | __...... | 3 | 75 |
| MIMAT0027715 | mmu-miR-6907-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025550 | bta-miR-1247-3p | 8 | __...... | 3 | 75 |
| MIMAT0023673 | ame-miR-6049 | 7 | __...... | 2 | 75 |
| MIMAT0023664 | ame-miR-6042 | 8 | __...... | 3 | 75 |
| MIMAT0019644 | pma-miR-4610 | 6 | ......__ | 1 | 75 |
| MIMAT0018263 | gma-miR1520j | 8 | _......_ | 3 | 75 |
| MIMAT0018257 | gma-miR1520i | 6 | ......__ | 1 | 75 |
| MIMAT0016795 | cin-miR-4181-3p | 6 | _......_ | 1 | 75 |
| MIMAT0014792 | api-miR-3051 | 8 | __...... | 3 | 75 |
| MIMAT0009137 | osa-miR1320-5p | 7 | __...... | 2 | 75 |
| MIMAT0008011 | ptr-miR-1292 | 8 | __...... | 3 | 75 |
| MIMAT0006385 | mml-miR-519b | 6 | ......__ | 1 | 75 |
| MIMAT0026872 | mml-miR-424-3p | 8 | ......__ | 3 | 75 |
| MIMAT0026851 | mml-miR-302a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0007713 | gga-miR-1798-5p | 6 | ......__ | 1 | 75 |
| MIMAT0005943 | hsa-miR-1292-5p | 8 | __...... | 3 | 75 |
| MIMAT0005386 | cre-miR1148.1 | 8 | ......__ | 3 | 75 |
| MIMAT0014801 | mmu-miR-1247-3p | 8 | __...... | 3 | 75 |
| MIMAT0002094 | ptc-miR478n | 7 | ......__ | 2 | 75 |
| MIMAT0002093 | ptc-miR478s | 7 | ......__ | 2 | 75 |
| MIMAT0002092 | ptc-miR478r | 7 | ......__ | 2 | 75 |
| MIMAT0002091 | ptc-miR478q | 7 | ......__ | 2 | 75 |
| MIMAT0002090 | ptc-miR478p | 7 | ......__ | 2 | 75 |
| MIMAT0002089 | ptc-miR478o | 7 | ......__ | 2 | 75 |
| MIMAT0002087 | ptc-miR478m | 7 | ......__ | 2 | 75 |
| MIMAT0002086 | ptc-miR478l | 7 | ......__ | 2 | 75 |
| MIMAT0002085 | ptc-miR478k | 7 | ......__ | 2 | 75 |
| MIMAT0002084 | ptc-miR478j | 7 | ......__ | 2 | 75 |
| MIMAT0002083 | ptc-miR478i | 7 | ......__ | 2 | 75 |
| MIMAT0002082 | ptc-miR478h | 7 | ......__ | 2 | 75 |
| MIMAT0020789 | dme-miR-6-3-5p | 8 | __...... | 3 | 75 |
