| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cacgttgt | 8 | ||
| MIMAT0030834 | prd-miR-7966b-5p | 1 | ......._ | 7 | 87 |
| MIMAT0030487 | prd-miR-7871-3p | 2 | ......._ | 8 | 87 |
| MIMAT0018319 | gma-miR4401a | 7 | _....... | 1 | 87 |
| MIMAT0012073 | bta-miR-2481 | 2 | _....... | 8 | 87 |
| MIMAT0005386 | cre-miR1148.1 | 8 | ......._ | 2 | 87 |
| MIMAT0031567 | ppe-miR858 | 1 | .t...... | 8 | 87 |
| MIMAT0018598 | ame-miR-3730 | 8 | .t...... | 1 | 87 |
| MIMAT0026872 | mml-miR-424-3p | 8 | ......t. | 1 | 87 |
| MIMAT0036497 | tch-miR-1306-3p | 1 | _......_ | 6 | 75 |
| MIMAT0035940 | chi-miR-1306-3p | 1 | _......_ | 6 | 75 |
| MIMAT0035598 | dvi-miR-981-3p | 3 | __...... | 8 | 75 |
| MIMAT0035327 | gsa-miR-9391-3p | 3 | __...... | 8 | 75 |
| MIMAT0035287 | gsa-miR-76a-3p | 3 | __...... | 8 | 75 |
| MIMAT0035140 | efu-miR-9353 | 2 | __...... | 7 | 75 |
| MIMAT0034475 | eca-miR-8946 | 2 | ......__ | 7 | 75 |
| MIMAT0033947 | atr-miR535 | 8 | __...... | 3 | 75 |
| MIMAT0033670 | sma-miR-8474-3p | 3 | _......_ | 8 | 75 |
| MIMAT0033508 | sma-miR-8404-5p | 3 | _......_ | 8 | 75 |
| MIMAT0033415 | str-miR-76-3p | 3 | __...... | 8 | 75 |
| MIMAT0033088 | ppc-miR-76-3p | 3 | __...... | 8 | 75 |
| MIMAT0032756 | ssa-miR-8162-3p | 8 | __...... | 3 | 75 |
| MIMAT0032628 | ssa-miR-375-3-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032625 | ssa-miR-375-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032534 | ssa-miR-21a-3p | 8 | __...... | 3 | 75 |
| MIMAT0031824 | cpa-miR535 | 8 | __...... | 3 | 75 |
| MIMAT0031514 | ppe-miR535a | 8 | __...... | 3 | 75 |
| MIMAT0030819 | prd-miR-76-3p | 3 | __...... | 8 | 75 |
| MIMAT0032221 | lva-miR-981-3p | 3 | __...... | 8 | 75 |
| MIMAT0032174 | pmi-miR-981-3p | 3 | __...... | 8 | 75 |
| MIMAT0029777 | cbn-miR-76 | 3 | __...... | 8 | 75 |
| MIMAT0029301 | mes-miR535b | 8 | __...... | 3 | 75 |
| MIMAT0029300 | mes-miR535a | 8 | __...... | 3 | 75 |
| MIMAT0028491 | mdo-miR-7262a-3p | 7 | __...... | 2 | 75 |
| MIMAT0028241 | mml-miR-1306-3p | 1 | _......_ | 6 | 75 |
| MIMAT0026070 | mdm-miR858 | 3 | __...... | 8 | 75 |
| MIMAT0026024 | mdm-miR535a | 8 | __...... | 3 | 75 |
| MIMAT0027715 | mmu-miR-6907-3p | 6 | ......__ | 1 | 75 |
| MIMAT0024999 | hme-miR-981 | 3 | __...... | 8 | 75 |
| MIMAT0024929 | gma-miR6300 | 3 | __...... | 8 | 75 |
| MIMAT0024852 | rno-miR-1306-3p | 2 | _......_ | 7 | 75 |
| MIMAT0024433 | mse-miR-981 | 3 | __...... | 8 | 75 |
| MIMAT0024225 | ggo-miR-1306 | 1 | _......_ | 6 | 75 |
| MIMAT0023753 | cgr-miR-1306-3p | 1 | _......_ | 6 | 75 |
| MIMAT0023685 | ame-miR-6061 | 2 | _......_ | 7 | 75 |
| MIMAT0023496 | hco-miR-76 | 3 | __...... | 8 | 75 |
| MIMAT0023255 | osa-miR812q | 1 | _......_ | 6 | 75 |
| MIMAT0022417 | ath-miR858b | 3 | __...... | 8 | 75 |
| MIMAT0022027 | aca-miR-5410-5p | 1 | __...... | 6 | 75 |
| MIMAT0021471 | asu-miR-76-3p | 3 | __...... | 8 | 75 |
| MIMAT0020068 | spu-miR-981 | 3 | __...... | 8 | 75 |
| MIMAT0020448 | tcc-miR535 | 8 | __...... | 3 | 75 |
| MIMAT0019644 | pma-miR-4610 | 6 | ......__ | 1 | 75 |
| MIMAT0019627 | pma-miR-4594 | 6 | _......_ | 1 | 75 |
| MIMAT0019627 | pma-miR-4594 | 3 | _......_ | 8 | 75 |
| MIMAT0018257 | gma-miR1520i | 6 | ......__ | 1 | 75 |
| MIMAT0018159 | pab-miR535 | 8 | __...... | 3 | 75 |
| MIMAT0016637 | cin-miR-4074-3p | 6 | _......_ | 1 | 75 |
| MIMAT0016427 | cin-miR-4000c-3p | 3 | __...... | 8 | 75 |
| MIMAT0016417 | cin-miR-375-5p | 1 | _......_ | 6 | 75 |
| MIMAT0016226 | ppy-miR-1306 | 1 | _......_ | 6 | 75 |
| MIMAT0017704 | aly-miR3436-3p | 8 | __...... | 3 | 75 |
| MIMAT0015536 | bmo-miR-3351 | 3 | _......_ | 8 | 75 |
| MIMAT0015418 | bmo-miR-3235 | 8 | _......_ | 3 | 75 |
| MIMAT0014736 | api-miR-981 | 3 | __...... | 8 | 75 |
| MIMAT0014441 | cqu-miR-1889-3p | 1 | ......__ | 6 | 75 |
| MIMAT0014386 | cqu-miR-981 | 3 | __...... | 8 | 75 |
| MIMAT0014267 | aae-miR-981 | 3 | __...... | 8 | 75 |
| MIMAT0014234 | aae-miR-1889-3p | 1 | ......__ | 6 | 75 |
| MIMAT0014205 | rco-miR535 | 8 | __...... | 3 | 75 |
| MIMAT0013969 | bhv1-miR-B7 | 1 | ......__ | 6 | 75 |
| MIMAT0013938 | ssc-miR-1306-3p | 1 | _......_ | 6 | 75 |
| MIMAT0012675 | dpu-miR-981 | 3 | __...... | 8 | 75 |
| MIMAT0013581 | cte-miR-2712 | 2 | _......_ | 7 | 75 |
| MIMAT0012594 | aqc-miR535 | 8 | __...... | 3 | 75 |
| MIMAT0012486 | dsi-miR-981-3p | 3 | __...... | 8 | 75 |
| MIMAT0012220 | dps-miR-981-3p | 3 | __...... | 8 | 75 |
| MIMAT0011550 | crm-miR-52-3p | 1 | ......__ | 6 | 75 |
| MIMAT0011525 | crm-miR-76 | 3 | __...... | 8 | 75 |
| MIMAT0011466 | cbr-miR-76 | 3 | __...... | 8 | 75 |
| MIMAT0011397 | sme-miR-76-3p | 3 | __...... | 8 | 75 |
| MIMAT0010121 | ame-miR-981 | 3 | __...... | 8 | 75 |
| MIMAT0010098 | tca-miR-981 | 3 | __...... | 8 | 75 |
| MIMAT0009601 | lgi-miR-981 | 3 | __...... | 8 | 75 |
| MIMAT0009548 | cte-miR-981 | 3 | __...... | 8 | 75 |
| MIMAT0009411 | mmu-miR-1306-3p | 1 | _......_ | 6 | 75 |
| MIMAT0008023 | ptr-miR-1306 | 1 | _......_ | 6 | 75 |
| MIMAT0011136 | xla-miR-1306 | 1 | _......_ | 6 | 75 |
| MIMAT0007857 | aga-miR-981 | 3 | __...... | 8 | 75 |
| MIMAT0006385 | mml-miR-519b | 6 | ......__ | 1 | 75 |
| MIMAT0026851 | mml-miR-302a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0007713 | gga-miR-1798-5p | 6 | ......__ | 1 | 75 |
| MIMAT0007682 | gga-miR-1772-3p | 2 | __...... | 7 | 75 |
| MIMAT0007294 | mdv1-miR-M10-5p | 2 | __...... | 7 | 75 |
| MIMAT0005738 | vvi-miR535c | 8 | __...... | 3 | 75 |
| MIMAT0005736 | vvi-miR535b | 8 | __...... | 3 | 75 |
| MIMAT0005735 | vvi-miR535a | 8 | __...... | 3 | 75 |
| MIMAT0005950 | hsa-miR-1306-3p | 1 | _......_ | 6 | 75 |
| MIMAT0005544 | mcmv-miR-M23-2-5p | 8 | ......__ | 3 | 75 |
| MIMAT0005497 | dme-miR-981-3p | 3 | __...... | 8 | 75 |
| MIMAT0003915 | ppt-miR535d | 8 | __...... | 3 | 75 |
| MIMAT0003142 | osa-miR535-5p | 8 | __...... | 3 | 75 |
| MIMAT0003141 | ppt-miR535c | 8 | __...... | 3 | 75 |
| MIMAT0003140 | ppt-miR535b | 8 | __...... | 3 | 75 |
| MIMAT0003139 | ppt-miR535a | 8 | __...... | 3 | 75 |
| MIMAT0002094 | ptc-miR478n | 7 | ......__ | 2 | 75 |
| MIMAT0002093 | ptc-miR478s | 7 | ......__ | 2 | 75 |
| MIMAT0002092 | ptc-miR478r | 7 | ......__ | 2 | 75 |
| MIMAT0002091 | ptc-miR478q | 7 | ......__ | 2 | 75 |
| MIMAT0002090 | ptc-miR478p | 7 | ......__ | 2 | 75 |
| MIMAT0002089 | ptc-miR478o | 7 | ......__ | 2 | 75 |
| MIMAT0002087 | ptc-miR478m | 7 | ......__ | 2 | 75 |
| MIMAT0002086 | ptc-miR478l | 7 | ......__ | 2 | 75 |
| MIMAT0002085 | ptc-miR478k | 7 | ......__ | 2 | 75 |
| MIMAT0002084 | ptc-miR478j | 7 | ......__ | 2 | 75 |
| MIMAT0002083 | ptc-miR478i | 7 | ......__ | 2 | 75 |
| MIMAT0002082 | ptc-miR478h | 7 | ......__ | 2 | 75 |
| MIMAT0000048 | cel-miR-76-3p | 3 | __...... | 8 | 75 |
| MIMAT0020311 | cel-miR-52-3p | 1 | ......__ | 6 | 75 |
