| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cactagt | 7 | ||
| MIMAT0033762 | pxy-miR-7a | 8 | ....... | 2 | 100 |
| MIMAT0033762 | pxy-miR-7a | 2 | _...... | 7 | 85 |
| MIMAT0030860 | stu-miR7987 | 2 | ....... | 8 | 100 |
| MIMAT0030860 | stu-miR7987 | 8 | _...... | 3 | 85 |
| MIMAT0016945 | rlcv-miR-rL1-23-5p | 2 | ....... | 8 | 100 |
| MIMAT0016945 | rlcv-miR-rL1-23-5p | 8 | _...... | 3 | 85 |
| MIMAT0010130 | ebv-miR-BART21-5p | 2 | ....... | 8 | 100 |
| MIMAT0010130 | ebv-miR-BART21-5p | 8 | _...... | 3 | 85 |
| MIMAT0036110 | chi-miR-28-3p | 1 | ......_ | 6 | 85 |
| MIMAT0034355 | cfa-miR-8860 | 3 | ......_ | 8 | 85 |
| MIMAT0030510 | prd-miR-35b-5p | 7 | _...... | 2 | 85 |
| MIMAT0030510 | prd-miR-35b-5p | 2 | _...... | 7 | 85 |
| MIMAT0030301 | bdi-miR7775-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028821 | mdo-miR-7382-3p | 1 | ......_ | 6 | 85 |
| MIMAT0024295 | ggo-miR-3923 | 7 | _...... | 2 | 85 |
| MIMAT0024295 | ggo-miR-3923 | 2 | _...... | 7 | 85 |
| MIMAT0023879 | cgr-miR-28-3p | 1 | ......_ | 6 | 85 |
| MIMAT0019803 | hsa-miR-4704-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019000 | hsa-miR-4473 | 6 | ......_ | 1 | 85 |
| MIMAT0018198 | hsa-miR-3923 | 7 | _...... | 2 | 85 |
| MIMAT0018198 | hsa-miR-3923 | 2 | _...... | 7 | 85 |
| MIMAT0016131 | ppy-miR-921 | 6 | ......_ | 1 | 85 |
| MIMAT0015547 | bmo-miR-3361 | 8 | _...... | 3 | 85 |
| MIMAT0015547 | bmo-miR-3361 | 3 | _...... | 8 | 85 |
| MIMAT0013093 | eca-miR-28-3p | 1 | ......_ | 6 | 85 |
| MIMAT0007815 | osa-miR1865-5p | 8 | ......_ | 3 | 85 |
| MIMAT0006675 | cfa-miR-28 | 1 | ......_ | 6 | 85 |
| MIMAT0004971 | hsa-miR-921 | 6 | ......_ | 1 | 85 |
| MIMAT0003410 | ebv-miR-BART3-5p | 8 | ......_ | 3 | 85 |
| MIMAT0026575 | mml-miR-28-3p | 1 | ......_ | 6 | 85 |
| MIMAT0015211 | ssc-miR-28-3p | 1 | ......_ | 6 | 85 |
| MIMAT0004716 | rno-miR-28-3p | 1 | ......_ | 6 | 85 |
| MIMAT0004661 | mmu-miR-28a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0004502 | hsa-miR-28-3p | 1 | ......_ | 6 | 85 |
