Result for your query miRNA sequence
>hsv1-miR-h6
cacuuccc

RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numbermiRNAStartAlignmentEnd% Identity
Query1cacttccc8
MIMAT0008404hsv1-miR-H6-3p1........8100
MIMAT0034942efu-miR-92872......._887
MIMAT0028697mdo-miR-7343-3p2......._887
MIMAT0026328ccr-miR-21928......._287
MIMAT0024945hme-miR-1b8_.......287
MIMAT0024493mse-miR-1b8_.......287
MIMAT0026961tgu-miR-2963-5p1_.......787
MIMAT0013788bmo-miR-1b-3p8_.......287
MIMAT0017185mghv-miR-M1-1-5p8......._287
MIMAT0034374cfa-miR-88741......t.887
MIMAT0027370hsa-miR-6734-3p1.c......887
MIMAT0023702hsa-miR-60778.t......187
MIMAT0018222tae-miR395a8......a.187
MIMAT0014125osa-miR395y8......a.187
MIMAT0014124osa-miR395x8......a.187
MIMAT0014013zma-miR395p-3p8......a.187
MIMAT0014012zma-miR395o-3p8......a.187
MIMAT0014011zma-miR395n-3p8......a.187
MIMAT0014010zma-miR395m-3p8......a.187
MIMAT0014009zma-miR395l-3p8......a.187
MIMAT0014008zma-miR395k-3p8......a.187
MIMAT0014007zma-miR395j-3p8......a.187
MIMAT0014006zma-miR395i-3p8......a.187
MIMAT0014005zma-miR395h-3p8......a.187
MIMAT0014004zma-miR395g-3p8......a.187
MIMAT0014003zma-miR395f-3p8......a.187
MIMAT0014002zma-miR395e-3p8......a.187
MIMAT0014001zma-miR395d-3p8......a.187
MIMAT0011356sbi-miR395l8......a.187
MIMAT0011355sbi-miR395k8......a.187
MIMAT0011354sbi-miR395j8......a.187
MIMAT0011353sbi-miR395i8......a.187
MIMAT0011352sbi-miR395h8......a.187
MIMAT0011351sbi-miR395g8......a.187
MIMAT0011350sbi-miR395c8......a.187
MIMAT0003878osa-miR395r8......a.187
MIMAT0003877osa-miR395w8......a.187
MIMAT0003874osa-miR395q8......a.187
MIMAT0003873osa-miR395p8......a.187
MIMAT0003871osa-miR395n8......a.187
MIMAT0003870osa-miR395m8......a.187
MIMAT0001701zma-miR395a-3p8......a.187
MIMAT0001700zma-miR395c-3p8......a.187
MIMAT0001698zma-miR395b-3p8......a.187
MIMAT0001433sbi-miR395e8......a.187
MIMAT0001432sbi-miR395d8......a.187
MIMAT0001430sbi-miR395a8......a.187
MIMAT0001429sbi-miR395b8......a.187
MIMAT0000973osa-miR395a8......a.187
MIMAT0000972osa-miR395c8......a.187
MIMAT0000969osa-miR395t8......a.187
MIMAT0000968osa-miR395s8......a.187
MIMAT0000967osa-miR395l8......a.187
MIMAT0000966osa-miR395k8......a.187
MIMAT0000965osa-miR395j8......a.187
MIMAT0000964osa-miR395i8......a.187
MIMAT0000963osa-miR395h8......a.187
MIMAT0000962osa-miR395g8......a.187
MIMAT0000961osa-miR395e8......a.187
MIMAT0000960osa-miR395d8......a.187
MIMAT0000959osa-miR395b8......a.187
MIMAT0037211ata-miR395c-3p7......__275
MIMAT0037185ata-miR395f-3p7......__275
MIMAT0037165ata-miR395d-3p7......__275
MIMAT0037163ata-miR395a-3p7......__275
MIMAT0037117ata-miR395e-3p7......__275
MIMAT0036975bta-miR-35338......__375
MIMAT0035851bra-miR395a-3p8......__375
MIMAT0035849bra-miR395c-3p8......__375
MIMAT0035847bra-miR395b-3p8......__375
MIMAT0035845bra-miR395d-3p8......__375
MIMAT0035542hsa-miR-95008__......375
MIMAT0035520bdi-miR395q7......__275
MIMAT0035427nve-miR-94686......__175
MIMAT0035184efu-miR-507a1......__675
MIMAT0035167efu-miR-9186e2_......_775
MIMAT0034907efu-miR-9186p6......__175
MIMAT0034867efu-miR-92507......__275
MIMAT0034298cfa-miR-88087__......275
MIMAT0033937atr-miR3958......__375
MIMAT0033532sma-miR-8414-5p1_......_675
MIMAT0032910ppc-miR-8364d-5p1......__675
MIMAT0032354ssa-miR-138-3-3p3_......_875
MIMAT0031821cpa-miR395e7......__275
MIMAT0031820cpa-miR395d7......__275
MIMAT0031819cpa-miR395c7......__275
MIMAT0031818cpa-miR395b7......__275
MIMAT0031817cpa-miR395a7......__275
MIMAT0031564ppe-miR8133-3p3_......_875
MIMAT0031492ppe-miR395n8......__375
MIMAT0031491ppe-miR395m8......__375
MIMAT0031490ppe-miR395l8......__375
MIMAT0031489ppe-miR395k8......__375
MIMAT0031488ppe-miR395j8......__375
MIMAT0031487ppe-miR395i8......__375
MIMAT0031486ppe-miR395h8......__375
MIMAT0031485ppe-miR395g8......__375
MIMAT0031484ppe-miR395f8......__375
MIMAT0031483ppe-miR395e8......__375
MIMAT0031482ppe-miR395d8......__375
MIMAT0031481ppe-miR395c8......__375
MIMAT0031480ppe-miR395b-3p8......__375
MIMAT0031478ppe-miR395a-3p8......__375
MIMAT0031348stu-miR156f-3p3......__875
MIMAT0031271stu-miR395j8......__375
MIMAT0031270stu-miR395i8......__375
MIMAT0031269stu-miR395h8......__375
MIMAT0031268stu-miR395g8......__375
MIMAT0031267stu-miR395f8......__375
MIMAT0031266stu-miR395e8......__375
MIMAT0031265stu-miR395d8......__375
MIMAT0031264stu-miR395c8......__375
MIMAT0031263stu-miR395b8......__375
MIMAT0031262stu-miR395a8......__375
MIMAT0031199stu-miR8019-5p7__......275
MIMAT0030096bdi-miR395p-3p7......__275
MIMAT0030094bdi-miR395o-3p7......__275
MIMAT0029836mmu-miR-7665-5p8__......375
MIMAT0029327lja-miR4088__......375
MIMAT0029297mes-miR4822__......775
MIMAT0029271mes-miR395d8......__375
MIMAT0029270mes-miR395c8......__375
MIMAT0029269mes-miR395b8......__375
MIMAT0029268mes-miR395a8......__375
MIMAT0029065gga-miR-7455-3p1__......675
MIMAT0028488mdo-miR-7261-5p8__......375
MIMAT0026363bma-miR-58647......__275
MIMAT0026170cme-miR395c8......__375
MIMAT0026157cme-miR395b8......__375
MIMAT0026144cme-miR395f8......__375
MIMAT0026143cme-miR395d8......__375
MIMAT0026142cme-miR395e8......__375
MIMAT0026141cme-miR395a8......__375
MIMAT0025988mdm-miR395i8......__375
MIMAT0025987mdm-miR395h8......__375
MIMAT0025986mdm-miR395g8......__375
MIMAT0025985mdm-miR395f8......__375
MIMAT0025984mdm-miR395e8......__375
MIMAT0025983mdm-miR395d8......__375
MIMAT0025982mdm-miR395c8......__375
MIMAT0025981mdm-miR395b8......__375
MIMAT0025980mdm-miR395a8......__375
MIMAT0028133mmu-miR-7118-5p8__......375
MIMAT0028054mmu-miR-7074-5p7__......275
MIMAT0027854mmu-miR-6976-5p8__......375
MIMAT0027832mmu-miR-3547-5p8__......375
MIMAT0027735mmu-miR-6917-3p3......__875
MIMAT0027731mmu-miR-6915-3p3_......_875
MIMAT0027572hsa-miR-6780b-5p8__......375
MIMAT0025801gga-miR-6695-5p8__......375
MIMAT0025768gga-miR-6667-5p7__......275
MIMAT0025692gga-miR-6597-3p2__......775
MIMAT0025334pde-miR482b2__......775
MIMAT0025273ptc-miR395k8......__375
MIMAT0025157mmu-miR-64058__......375
MIMAT0025156mmu-miR-64048__......375
MIMAT0025112mmu-miR-63688__......375
MIMAT0032136sma-miR-31-3p3__......875
MIMAT0024925gma-miR395m8......__375
MIMAT0024924gma-miR395l8......__375
MIMAT0024923gma-miR395k8......__375
MIMAT0024922gma-miR395j8......__375
MIMAT0024921gma-miR395i8......__375
MIMAT0024920gma-miR395h8......__375
MIMAT0027273ppe-miR482b-3p1__......675
MIMAT0024779nta-miR61637_......_275
MIMAT0024707nta-miR395c8......__375
MIMAT0024706nta-miR395b8......__375
MIMAT0024705nta-miR395a8......__375
MIMAT0027208lus-miR395e8......__375
MIMAT0027145lus-miR395d8......__375
MIMAT0027136lus-miR395c8......__375
MIMAT0027133lus-miR395b8......__375
MIMAT0027132lus-miR395a8......__375
MIMAT0024528cca-miR395c8......__375
MIMAT0024527cca-miR395b8......__375
MIMAT0024526cca-miR395a8......__375
MIMAT0023641bna-miR395f8......__375
MIMAT0023640bna-miR395e8......__375
MIMAT0023639bna-miR395d8......__375
MIMAT0023638bna-miR395c8......__375
MIMAT0023637bna-miR395b8......__375
MIMAT0023636bna-miR395a8......__375
MIMAT0023246gma-miR395g7......__275
MIMAT0023245gma-miR395f7......__275
MIMAT0023244gma-miR395e7......__275
MIMAT0023243gma-miR395d7......__275
MIMAT0022766vun-miR4822__......775
MIMAT0022762vun-miR3958......__375
MIMAT0022665ola-miR-459-3p8_......_375
MIMAT0023004rgl-miR1648__......375
MIMAT0022241sbi-miR5564a8__......375
MIMAT0021672gma-miR482d-3p2__......775
MIMAT0021626gma-miR395c8......__375
MIMAT0021625gma-miR395b8......__375
MIMAT0021624gma-miR395a8......__375
MIMAT0020752bdi-miR395n-3p7......__275
MIMAT0020751bdi-miR395l-3p7......__275
MIMAT0020750bdi-miR395k-3p7......__275
MIMAT0020749bdi-miR395j-3p7......__275
MIMAT0020748bdi-miR395h-3p7......__275
MIMAT0020747bdi-miR395g-3p7......__275
MIMAT0020746bdi-miR395f-3p7......__275
MIMAT0020745bdi-miR395e-3p7......__275
MIMAT0020744bdi-miR395m7......__275
MIMAT0021128hsa-miR-5196-5p7__......275
MIMAT0020702bdi-miR395c-3p7......__275
MIMAT0020663bdi-miR395b7......__275
MIMAT0020656bdi-miR395a7......__275
MIMAT0020426tcc-miR395b8......__375
MIMAT0020425tcc-miR395a8......__375
MIMAT0019968hsa-miR-4795-5p7......__275
MIMAT0019882hsa-miR-4747-5p7__......275
MIMAT0019844hsa-miR-4725-3p8__......375
MIMAT0018480csi-miR482a-3p2__......775
MIMAT0018462csi-miR3958......__375
MIMAT0020952gma-miR482b-3p2__......775
MIMAT0018223tae-miR395b7......__275
MIMAT0018836tca-miR-3872-5p7......__275
MIMAT0018776tca-miR-3049-5p8__......375
MIMAT0018172mghv-miR-M1-13-5p7__......275
MIMAT0022968ame-miR-3049-5p8__......375
MIMAT0018157pab-miR482b2__......775
MIMAT0018156pab-miR482a2__......775
MIMAT0018151pab-miR3958......__375
MIMAT0018105hsa-miR-3679-3p1__......675
MIMAT0017995hsa-miR-3616-5p8......__375
MIMAT0016901hsa-miR-42718__......375
MIMAT0017905aly-miR395i8......__375
MIMAT0016676cin-miR-4095-5p1__......675
MIMAT0016445cin-miR-4001a-1-3p3......__875
MIMAT0016384gga-miR-35338......__375
MIMAT0016354gso-miR482b2__......775
MIMAT0016353gso-miR482a2__......775
MIMAT0016059ppy-miR-6173_......_875
MIMAT0016037ppy-miR-5956......__175
MIMAT0016015ppy-miR-5738......__375
MIMAT0015861ppy-miR-3736......__175
MIMAT0017668aly-miR395h-3p8......__375
MIMAT0017666aly-miR395g-3p8......__375
MIMAT0017556aly-miR395f-3p8......__375
MIMAT0017554aly-miR395e-3p8......__375
MIMAT0017552aly-miR395d-3p8......__375
MIMAT0017550aly-miR395c-3p8......__375
MIMAT0017548aly-miR395b-3p8......__375
MIMAT0014789api-miR-30498__......375
MIMAT0014191rco-miR395e8......__375
MIMAT0014190rco-miR395d8......__375
MIMAT0014189rco-miR395c8......__375
MIMAT0014188rco-miR395b8......__375
MIMAT0014187rco-miR395a8......__375
MIMAT0013841bta-miR-28831__......675
MIMAT0017368rno-miR-547-5p2......__775
MIMAT0012780mml-miR-5956......__175
MIMAT0013412mtr-miR26441......__675
MIMAT0013316mtr-miR2609b7_......_275
MIMAT0013315mtr-miR2609a7_......_275
MIMAT0012066bta-miR-24757......__275
MIMAT0011996bta-miR-24268_......_375
MIMAT0011964bta-miR-24068__......375
MIMAT0011931bta-miR-2382-3p3_......_875
MIMAT0011918bta-miR-2373-5p1__......675
MIMAT0011875bta-miR-23403_......_875
MIMAT0011173pvu-miR482-3p2__......775
MIMAT0008279ptr-miR-6173_......_875
MIMAT0008265ptr-miR-5956......__175
MIMAT0007927sly-miR395b8......__375
MIMAT0007926sly-miR395a8......__375
MIMAT0006435mml-miR-5738......__375
MIMAT0006299mml-miR-3736......__175
MIMAT0007715gga-miR-17997......__275
MIMAT0007689gga-miR-17788__......375
MIMAT0007497gga-miR-1627-5p6......__175
MIMAT0007364gma-miR482a-3p2__......775
MIMAT0006014pta-miR482c2__......775
MIMAT0007110oan-miR-13786......__175
MIMAT0006973oan-miR-1421f-5p7_......_275
MIMAT0006969oan-miR-1421d-5p7_......_275
MIMAT0005723vvi-miR395m8......__375
MIMAT0005722vvi-miR395l8......__375
MIMAT0005721vvi-miR395k8......__375
MIMAT0005720vvi-miR395j8......__375
MIMAT0005719vvi-miR395i8......__375
MIMAT0005718vvi-miR395h8......__375
MIMAT0005717vvi-miR395g8......__375
MIMAT0005716vvi-miR395f8......__375
MIMAT0005715vvi-miR395e8......__375
MIMAT0005714vvi-miR395d8......__375
MIMAT0005713vvi-miR395c8......__375
MIMAT0005712vvi-miR395b8......__375
MIMAT0005711vvi-miR395a8......__375
MIMAT0005495dme-miR-979-3p3__......875
MIMAT0005003pta-miR482b2__......775
MIMAT0005002pta-miR482a2__......775
MIMAT0004057osa-miR814c1......__675
MIMAT0004056osa-miR814b1......__675
MIMAT0004055osa-miR814a1......__675
MIMAT0003872osa-miR395o8......__375
MIMAT0003868mtr-miR395o8......__375
MIMAT0003867mtr-miR395n8......__375
MIMAT0003866mtr-miR395m8......__375
MIMAT0003865mtr-miR395l8......__375
MIMAT0003863mtr-miR395j8......__375
MIMAT0003862mtr-miR395i8......__375
MIMAT0003861mtr-miR395h8......__375
MIMAT0003860mtr-miR395g8......__375
MIMAT0003859mtr-miR395f8......__375
MIMAT0003858mtr-miR395e8......__375
MIMAT0003857mtr-miR395d8......__375
MIMAT0003856mtr-miR395c8......__375
MIMAT0003286hsa-miR-6173_......_875
MIMAT0003263hsa-miR-5956......__175
MIMAT0003238hsa-miR-5738......__375
MIMAT0002030ptc-miR395j8......__375
MIMAT0002029ptc-miR395i8......__375
MIMAT0002028ptc-miR395h8......__375
MIMAT0002027ptc-miR395g8......__375
MIMAT0002026ptc-miR395f8......__375
MIMAT0002025ptc-miR395e8......__375
MIMAT0002024ptc-miR395d8......__375
MIMAT0002023ptc-miR395c8......__375
MIMAT0002022ptc-miR395b8......__375
MIMAT0001757sbi-miR395f8......__375
MIMAT0001648mtr-miR395a8......__375
MIMAT0031929dre-miR-430c-5p1......__675
MIMAT0000943ath-miR395f8......__375
MIMAT0000942ath-miR395e8......__375
MIMAT0000941ath-miR395d8......__375
MIMAT0000940ath-miR395c8......__375
MIMAT0000939ath-miR395b8......__375
MIMAT0000938ath-miR395a8......__375
MIMAT0000726hsa-miR-373-3p6......__175