| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cagaagtc | 8 | ||
| MIMAT0025724 | gga-miR-6628-3p | 1 | ........ | 8 | 100 |
| MIMAT0015508 | bmo-miR-3321 | 1 | ........ | 8 | 100 |
| MIMAT0005552 | mcmv-miR-m88-1-3p | 1 | ........ | 8 | 100 |
| MIMAT0035101 | efu-miR-9338 | 1 | _....... | 7 | 87 |
| MIMAT0034055 | gra-miR7484c | 1 | _....... | 7 | 87 |
| MIMAT0030714 | prd-miR-35a-5p | 8 | ......._ | 2 | 87 |
| MIMAT0028995 | oan-miR-7422a-3p | 7 | ......._ | 1 | 87 |
| MIMAT0028249 | mml-miR-6505-3p | 8 | _....... | 2 | 87 |
| MIMAT0028065 | mmu-miR-7079-3p | 8 | _....... | 2 | 87 |
| MIMAT0025467 | hsa-miR-6505-3p | 8 | _....... | 2 | 87 |
| MIMAT0021548 | asu-miR-5348-5p | 1 | ......._ | 7 | 87 |
| MIMAT0019273 | oar-miR-495-5p | 1 | _....... | 7 | 87 |
| MIMAT0012051 | bta-miR-2464-5p | 7 | ......._ | 1 | 87 |
| MIMAT0008415 | dan-miR-284 | 1 | _....... | 7 | 87 |
| MIMAT0007721 | gga-miR-1804 | 2 | ......._ | 8 | 87 |
| MIMAT0017819 | rno-miR-3557-5p | 8 | ......g. | 1 | 87 |
| MIMAT0036750 | oha-miR-1677b-3p | 7 | __...... | 2 | 75 |
| MIMAT0035714 | mmu-miR-3154 | 1 | ......__ | 6 | 75 |
| MIMAT0034936 | efu-miR-9285 | 8 | __...... | 3 | 75 |
| MIMAT0034374 | cfa-miR-8874 | 7 | _......_ | 2 | 75 |
| MIMAT0034343 | cfa-miR-8848 | 7 | ......__ | 2 | 75 |
| MIMAT0034326 | cfa-miR-8833 | 7 | __...... | 2 | 75 |
| MIMAT0034119 | gra-miR477 | 2 | __...... | 7 | 75 |
| MIMAT0033781 | pxy-miR-8534-3p | 1 | __...... | 6 | 75 |
| MIMAT0033446 | str-miR-240-5p | 1 | _......_ | 6 | 75 |
| MIMAT0033143 | ppc-miR-8229b-3p | 8 | __...... | 3 | 75 |
| MIMAT0033050 | ppc-miR-8275-3p | 8 | ......__ | 3 | 75 |
| MIMAT0032666 | ssa-miR-7132a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0031615 | bbe-miR-2058-5p | 3 | _......_ | 8 | 75 |
| MIMAT0031613 | bbe-miR-2057-5p | 3 | _......_ | 8 | 75 |
| MIMAT0031584 | bbe-miR-129b-5p | 8 | ......__ | 3 | 75 |
| MIMAT0030108 | bdi-miR5181c-3p | 6 | _......_ | 1 | 75 |
| MIMAT0029646 | crm-miR-254 | 3 | ......__ | 8 | 75 |
| MIMAT0029160 | ghr-miR7511 | 1 | _......_ | 6 | 75 |
| MIMAT0028863 | mdo-miR-7386m-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028849 | mdo-miR-7386k-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028743 | mdo-miR-7365-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028256 | mml-miR-548h-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027918 | mmu-miR-7007-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027814 | mmu-miR-6957-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027378 | hsa-miR-6738-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025796 | gga-miR-6690-5p | 2 | ......__ | 7 | 75 |
| MIMAT0025683 | gga-miR-6590-3p | 8 | _......_ | 3 | 75 |
| MIMAT0025529 | bta-miR-3154 | 1 | ......__ | 6 | 75 |
| MIMAT0025258 | ptc-miR6439b | 3 | ......__ | 8 | 75 |
| MIMAT0027319 | ppe-miR6287 | 3 | _......_ | 8 | 75 |
| MIMAT0024627 | mml-miR-3154 | 1 | ......__ | 6 | 75 |
| MIMAT0024608 | ptr-miR-3154 | 1 | ......__ | 6 | 75 |
| MIMAT0024536 | cca-miR6103-3p | 3 | _......_ | 8 | 75 |
| MIMAT0024402 | ppy-miR-3154 | 1 | ......__ | 6 | 75 |
| MIMAT0022474 | hsa-miR-548ax | 1 | _......_ | 6 | 75 |
| MIMAT0023001 | rgl-miR5576 | 1 | _......_ | 6 | 75 |
| MIMAT0021798 | aca-miR-1677b-3p | 7 | __...... | 2 | 75 |
| MIMAT0021796 | aca-miR-1677a | 7 | __...... | 2 | 75 |
| MIMAT0021310 | mtr-miR2629h | 2 | ......__ | 7 | 75 |
| MIMAT0021110 | osa-miR5157b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0021108 | osa-miR5157a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0021098 | osa-miR5150-5p | 8 | ......__ | 3 | 75 |
| MIMAT0021029 | hsa-miR-548ao-5p | 1 | _......_ | 6 | 75 |
| MIMAT0020080 | bfl-miR-129b | 8 | ......__ | 3 | 75 |
| MIMAT0019968 | hsa-miR-4795-5p | 1 | _......_ | 6 | 75 |
| MIMAT0019911 | hsa-miR-4762-3p | 6 | ......__ | 1 | 75 |
| MIMAT0018339 | gma-miR156g | 2 | ......__ | 7 | 75 |
| MIMAT0018761 | tca-miR-3852-3p | 7 | ......__ | 2 | 75 |
| MIMAT0018131 | pab-miR3699 | 3 | ......__ | 8 | 75 |
| MIMAT0019222 | hsa-miR-3682-5p | 8 | _......_ | 3 | 75 |
| MIMAT0018026 | vvi-miR477b-3p | 2 | __...... | 7 | 75 |
| MIMAT0016303 | sja-miR-3494 | 3 | ......__ | 8 | 75 |
| MIMAT0016059 | ppy-miR-617 | 7 | __...... | 2 | 75 |
| MIMAT0015812 | ppy-miR-298 | 3 | ......__ | 8 | 75 |
| MIMAT0015062 | hsa-miR-3182 | 7 | ......__ | 2 | 75 |
| MIMAT0015028 | hsa-miR-3154 | 1 | ......__ | 6 | 75 |
| MIMAT0026959 | tgu-miR-1677-3p | 8 | __...... | 3 | 75 |
| MIMAT0014446 | cel-miR-2953-5p | 3 | ......__ | 8 | 75 |
| MIMAT0011875 | bta-miR-2340 | 7 | __...... | 2 | 75 |
| MIMAT0011792 | bta-miR-2284i | 2 | _......_ | 7 | 75 |
| MIMAT0011501 | cbr-miR-74b-5p | 8 | __...... | 3 | 75 |
| MIMAT0009984 | bfl-miR-2058-5p | 3 | _......_ | 8 | 75 |
| MIMAT0009983 | bfl-miR-2057 | 3 | _......_ | 8 | 75 |
| MIMAT0009756 | nve-miR-2023-3p | 3 | _......_ | 8 | 75 |
| MIMAT0009437 | mmu-miR-1964-3p | 8 | __...... | 3 | 75 |
| MIMAT0009087 | dya-miR-284 | 2 | __...... | 7 | 75 |
| MIMAT0008902 | dsi-miR-284 | 2 | __...... | 7 | 75 |
| MIMAT0008798 | dse-miR-284 | 2 | __...... | 7 | 75 |
| MIMAT0008708 | dpe-miR-284 | 2 | __...... | 7 | 75 |
| MIMAT0008513 | der-miR-284 | 2 | __...... | 7 | 75 |
| MIMAT0008279 | ptr-miR-617 | 7 | __...... | 2 | 75 |
| MIMAT0008081 | ptr-miR-298 | 3 | ......__ | 8 | 75 |
| MIMAT0007969 | ptr-miR-1237 | 8 | ......__ | 3 | 75 |
| MIMAT0006254 | mml-miR-298 | 3 | ......__ | 8 | 75 |
| MIMAT0007563 | gga-miR-1677-3p | 7 | __...... | 2 | 75 |
| MIMAT0006969 | oan-miR-1421d-5p | 3 | __...... | 8 | 75 |
| MIMAT0005592 | hsa-miR-1237-3p | 8 | ......__ | 3 | 75 |
| MIMAT0005248 | smo-miR1094b | 7 | _......_ | 2 | 75 |
| MIMAT0005247 | smo-miR1094a | 7 | _......_ | 2 | 75 |
| MIMAT0005240 | smo-miR1088-5p | 1 | ......__ | 6 | 75 |
| MIMAT0004989 | pta-miR156b | 1 | ......__ | 6 | 75 |
| MIMAT0004988 | pta-miR156a | 1 | ......__ | 6 | 75 |
| MIMAT0004389 | cre-miR907 | 7 | ......__ | 2 | 75 |
| MIMAT0004901 | hsa-miR-298 | 3 | ......__ | 8 | 75 |
| MIMAT0003286 | hsa-miR-617 | 7 | __...... | 2 | 75 |
| MIMAT0001248 | dps-miR-284 | 2 | __...... | 7 | 75 |
| MIMAT0031891 | cel-miR-254-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020319 | cel-miR-73-5p | 8 | __...... | 3 | 75 |
