| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cagacag | 7 | ||
| MIMAT0036830 | oha-miR-3120 | 8 | ....... | 2 | 100 |
| MIMAT0016725 | cin-miR-4130-3p | 1 | ....... | 7 | 100 |
| MIMAT0019198 | hsa-miR-3120-5p | 8 | ....... | 2 | 100 |
| MIMAT0008029 | ptr-miR-1324 | 2 | ....... | 8 | 100 |
| MIMAT0007546 | gga-miR-1664-5p | 2 | ....... | 8 | 100 |
| MIMAT0005956 | hsa-miR-1324 | 2 | ....... | 8 | 100 |
| MIMAT0003421 | ebv-miR-BART11-5p | 2 | ....... | 8 | 100 |
| MIMAT0036165 | chi-miR-346-5p | 6 | ......_ | 1 | 85 |
| MIMAT0035171 | efu-miR-9360 | 6 | ......_ | 1 | 85 |
| MIMAT0034901 | efu-miR-9269 | 3 | ......_ | 8 | 85 |
| MIMAT0034892 | efu-miR-9264 | 3 | ......_ | 8 | 85 |
| MIMAT0034631 | eca-miR-9086 | 8 | ......_ | 3 | 85 |
| MIMAT0033412 | str-miR-8379a-5p | 8 | _...... | 3 | 85 |
| MIMAT0033281 | ppc-miR-8359-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033110 | ppc-miR-8364f-3p | 1 | _...... | 6 | 85 |
| MIMAT0033041 | ppc-miR-8272-5p | 6 | ......_ | 1 | 85 |
| MIMAT0032767 | ath-miR8169 | 3 | _...... | 8 | 85 |
| MIMAT0030481 | prd-miR-7869-3p | 6 | ......_ | 1 | 85 |
| MIMAT0030317 | bdi-miR7781-3p | 8 | ......_ | 3 | 85 |
| MIMAT0030217 | bdi-miR7740-3p | 2 | _...... | 7 | 85 |
| MIMAT0029997 | mtr-miR7698-3p | 1 | ......_ | 6 | 85 |
| MIMAT0028146 | ssc-miR-7135-3p | 8 | _...... | 3 | 85 |
| MIMAT0027801 | mmu-miR-6950-3p | 8 | _...... | 3 | 85 |
| MIMAT0027677 | hsa-miR-6888-3p | 8 | _...... | 3 | 85 |
| MIMAT0027653 | hsa-miR-6876-3p | 8 | _...... | 3 | 85 |
| MIMAT0025695 | gga-miR-6601-3p | 8 | ......_ | 3 | 85 |
| MIMAT0025660 | gga-miR-6576-3p | 8 | ......_ | 3 | 85 |
| MIMAT0025656 | gga-miR-6574-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025061 | rno-miR-6322 | 6 | ......_ | 1 | 85 |
| MIMAT0025057 | rno-miR-3075 | 6 | ......_ | 1 | 85 |
| MIMAT0025053 | rno-miR-6316 | 8 | ......_ | 3 | 85 |
| MIMAT0024197 | ggo-miR-4524a | 3 | _...... | 8 | 85 |
| MIMAT0024190 | ggo-miR-346 | 6 | ......_ | 1 | 85 |
| MIMAT0024059 | ptr-miR-4524a | 3 | _...... | 8 | 85 |
| MIMAT0023295 | osa-miR5822 | 6 | ......_ | 1 | 85 |
| MIMAT0023178 | gma-miR1516c | 8 | ......_ | 3 | 85 |
| MIMAT0022492 | hsa-miR-5699-3p | 8 | _...... | 3 | 85 |
| MIMAT0022256 | hsa-miR-4524b-3p | 2 | _...... | 7 | 85 |
| MIMAT0019706 | hsa-miR-4645-3p | 1 | _...... | 6 | 85 |
| MIMAT0019283 | oar-miR-654-3p | 8 | ......_ | 3 | 85 |
| MIMAT0019063 | hsa-miR-4524a-3p | 3 | _...... | 8 | 85 |
| MIMAT0018934 | hsa-miR-4421 | 8 | _...... | 3 | 85 |
| MIMAT0016705 | cin-miR-4115-5p | 8 | ......_ | 3 | 85 |
| MIMAT0016088 | ppy-miR-654-3p | 8 | ......_ | 3 | 85 |
| MIMAT0016066 | ppy-miR-626 | 8 | _...... | 3 | 85 |
| MIMAT0015847 | ppy-miR-346 | 6 | ......_ | 1 | 85 |
| MIMAT0015580 | bmo-miR-3384-3p | 6 | ......_ | 1 | 85 |
| MIMAT0015454 | bmo-miR-3269 | 6 | ......_ | 1 | 85 |
| MIMAT0015040 | hsa-miR-3166 | 3 | ......_ | 8 | 85 |
| MIMAT0014858 | mmu-miR-3075-5p | 6 | ......_ | 1 | 85 |
| MIMAT0012902 | eca-miR-346 | 6 | ......_ | 1 | 85 |
| MIMAT0012517 | dsi-miR-2580 | 8 | ......_ | 3 | 85 |
| MIMAT0012167 | sme-miR-315-3p | 7 | _...... | 2 | 85 |
| MIMAT0009898 | cfa-miR-346 | 6 | ......_ | 1 | 85 |
| MIMAT0009725 | lgi-miR-1994b | 3 | _...... | 8 | 85 |
| MIMAT0009724 | lgi-miR-1994a | 3 | _...... | 8 | 85 |
| MIMAT0009714 | cla-miR-1994 | 3 | _...... | 8 | 85 |
| MIMAT0009702 | cte-miR-1994 | 3 | _...... | 8 | 85 |
| MIMAT0009359 | bta-miR-654 | 8 | ......_ | 3 | 85 |
| MIMAT0009297 | bta-miR-346 | 6 | ......_ | 1 | 85 |
| MIMAT0008304 | ptr-miR-654 | 8 | ......_ | 3 | 85 |
| MIMAT0008285 | ptr-miR-626 | 8 | _...... | 3 | 85 |
| MIMAT0008112 | ptr-miR-346 | 6 | ......_ | 1 | 85 |
| MIMAT0006496 | mml-miR-654-3p | 8 | ......_ | 3 | 85 |
| MIMAT0006285 | mml-miR-346 | 6 | ......_ | 1 | 85 |
| MIMAT0004898 | mmu-miR-654-3p | 8 | ......_ | 3 | 85 |
| MIMAT0003510 | mmu-miR-717 | 3 | ......_ | 8 | 85 |
| MIMAT0004814 | hsa-miR-654-3p | 8 | ......_ | 3 | 85 |
| MIMAT0003295 | hsa-miR-626 | 8 | _...... | 3 | 85 |
| MIMAT0000773 | hsa-miR-346 | 6 | ......_ | 1 | 85 |
| MIMAT0000597 | mmu-miR-346-5p | 6 | ......_ | 1 | 85 |
| MIMAT0000596 | rno-miR-346 | 6 | ......_ | 1 | 85 |
