Result for your query miRNA sequence
>rrv-miR-rr1-3-3p
caggguuu

RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numbermiRNAStartAlignmentEnd% Identity
Query1cagggttt8
MIMAT0035308gsa-miR-10b-5p7......._187
MIMAT0032677ssa-miR-729-5p1......._787
MIMAT0031574bbe-miR-10b-5p7......._187
MIMAT0032193lva-miR-10-5p7......._187
MIMAT0032143pmi-miR-10-5p7......._187
MIMAT0027546hsa-miR-6823-5p2......._887
MIMAT0027366hsa-miR-6732-3p8......._287
MIMAT0025023sma-miR-10-5p7......._187
MIMAT0016496cin-miR-4008a-3p1_.......787
MIMAT0016492cin-miR-1502c-3p1_.......787
MIMAT0016253sja-miR-10-5p7......._187
MIMAT0012063bta-miR-24722......._887
MIMAT0011223sme-miR-10a-5p7......._187
MIMAT0009654spu-miR-107......._187
MIMAT0009468bfl-miR-10b7......._187
MIMAT0006467mml-miR-6167_.......187
MIMAT0007471gga-miR-16051_.......787
MIMAT0007412gga-miR-1555-3p1......._787
MIMAT0005172ppt-miR10548_.......287
MIMAT0003973sme-miR-10b-5p7......._187
MIMAT0036605tch-miR-5048......c.187
MIMAT0036268chi-miR-5048......c.187
MIMAT0036027chi-miR-193b-5p1.g......887
MIMAT0035199efu-miR-5048......c.187
MIMAT0035100efu-miR-193b1.g......887
MIMAT0030931stu-miR8008b8.t......187
MIMAT0028652mdo-miR-193b-5p1.g......887
MIMAT0024138ggo-miR-193b1.g......887
MIMAT0023978cgr-miR-5048......c.187
MIMAT0023825cgr-miR-193b-5p1.g......887
MIMAT0019843hsa-miR-4725-5p8......c.187
MIMAT0016581cin-miR-4046-5p1......g.887
MIMAT0015927ppy-miR-5048......c.187
MIMAT0027014tgu-miR-193a-5p1.g......887
MIMAT0013931ssc-miR-5048......c.187
MIMAT0013228eca-miR-5048......c.187
MIMAT0012830rno-miR-5048......c.187
MIMAT0009907cfa-miR-5048......c.187
MIMAT0009340bta-miR-5048......c.187
MIMAT0008177ptr-miR-5048......c.187
MIMAT0006699cfa-miR-193b1.g......887
MIMAT0006368mml-miR-504-5p8......c.187
MIMAT0026836mml-miR-193b-5p1.g......887
MIMAT0006820oan-miR-193-5p1.g......887
MIMAT0004889mmu-miR-504-5p8......c.187
MIMAT0017271mmu-miR-193b-5p1.g......887
MIMAT0004090mdo-miR-10b-5p8......a.187
MIMAT0026629gga-miR-193b-5p1.g......887
MIMAT0002875hsa-miR-504-5p8......c.187
MIMAT0004767hsa-miR-193b-5p1.g......887
MIMAT0037172ata-miR6201-5p8......__375
MIMAT0037023ssc-miR-9805-3p3......__875
MIMAT0036992tae-miR62018......__375
MIMAT0036664oha-miR-10c-5p7......__275
MIMAT0036662oha-miR-10b-5p7......__275
MIMAT0036660oha-miR-10a-5p7......__275
MIMAT0036504tch-miR-296-3p2_......_775
MIMAT0036471tch-miR-10b-5p7......__275
MIMAT0036390gma-miR97577_......_275
MIMAT0036111chi-miR-296-3p1_......_675
MIMAT0036084chi-miR-23316......__175
MIMAT0035913chi-miR-10b-5p7......__275
MIMAT0035911chi-miR-10a-5p7......__275
MIMAT0035733rno-miR-193b-5p2__......775
MIMAT0035604dvi-miR-993-5p8......__375
MIMAT0035306gsa-lin-4-5p6......__175
MIMAT0034944efu-miR-99a6__......175
MIMAT0033869atr-miR85848_......_375
MIMAT0033793pxy-miR-10-5p7......__275
MIMAT0033765pxy-miR-8524-5p3__......875
MIMAT0033761pxy-miR-64971__......675
MIMAT0033724pxy-miR-8507-5p3__......875
MIMAT0033677sma-miR-8478-5p3_......_875
MIMAT0033482str-miR-8396-5p2__......775
MIMAT0033432str-miR-8386-5p2__......775
MIMAT0032999ppc-miR-57-5p7......__275
MIMAT0032918ppc-miR-8233-5p1_......_675
MIMAT0032635ssa-miR-430c-5p6_......_175
MIMAT0032550ssa-miR-23a-4-5p1_......_675
MIMAT0032444ssa-miR-192b-3p1__......675
MIMAT0032299ssa-miR-10d-5p7......__275
MIMAT0032295ssa-miR-10b-5p7......__275
MIMAT0032292ssa-miR-10a-5p7......__275
MIMAT0031576bbe-miR-10c-5p7......__275
MIMAT0031572bbe-miR-10a-5p7......__275
MIMAT0030786prd-miR-124-5p1__......675
MIMAT0030446bta-miR-2285ad7__......275
MIMAT0030348hhi-miR-10d7......__275
MIMAT0030031oar-miR-10b6......__175
MIMAT0030030oar-miR-10a7......__275
MIMAT0029944bta-miR-2285y7__......275
MIMAT0029773cbn-miR-577......__275
MIMAT0029394ipu-miR-10d7......__275
MIMAT0029393ipu-miR-10c7......__275
MIMAT0029392ipu-miR-10b7......__275
MIMAT0029391ipu-miR-10a7......__275
MIMAT0029053gga-miR-7449-3p1_......_675
MIMAT0028933mdo-miR-7398h-3p7_......_275
MIMAT0028404mmu-miR-7218-5p3......__875
MIMAT0028283mml-miR-7172-3p8__......375
MIMAT0026202ccr-miR-10d7......__275
MIMAT0026201ccr-miR-10c7......__275
MIMAT0026200ccr-miR-10b7......__275
MIMAT0028043mmu-miR-7068-3p8......__375
MIMAT0027968mmu-miR-7032-5p3......__875
MIMAT0027967mmu-miR-7031-3p6_......_175
MIMAT0027959mmu-miR-7027-3p3__......875
MIMAT0027951mmu-miR-7023-3p8......__375
MIMAT0027941mmu-miR-7018-3p8......__375
MIMAT0027939mmu-miR-7017-3p6......__175
MIMAT0027938mmu-miR-7017-5p3_......_875
MIMAT0027882mmu-miR-6990-5p3......__875
MIMAT0027581hsa-miR-6839-3p3__......875
MIMAT0027443hsa-miR-6771-3p7__......275
MIMAT0025531bta-miR-2285n8__......375
MIMAT0025530bta-miR-2285o6__......175
MIMAT0025528bta-miR-65172......__775
MIMAT0025422pol-miR-10b-5p7......__275
MIMAT0025020hme-miR-6312-3p7......__275
MIMAT0024953hme-miR-27566......__175
MIMAT0024952hme-miR-27557......__275
MIMAT0024932hme-miR-106......__175
MIMAT0024828hvu-miR62018......__375
MIMAT0024587bta-miR-2285l7__......275
MIMAT0024492mse-miR-27883__......875
MIMAT0024490mse-miR-10b7......__275
MIMAT0024467mse-miR-9937......__275
MIMAT0024442mse-miR-27557......__275
MIMAT0024290ggo-miR-2961_......_675
MIMAT0024194ggo-miR-6292__......775
MIMAT0024163ggo-miR-5047......__275
MIMAT0023991cgr-miR-652-5p7_......_275
MIMAT0023880cgr-miR-2962_......_775
MIMAT0023737cgr-miR-10b-5p7......__275
MIMAT0023735cgr-miR-10a-5p7......__275
MIMAT0023418hco-miR-5904c7__......275
MIMAT0023373hco-miR-5904b8__......375
MIMAT0023361hco-miR-59078_......_375
MIMAT0023153mtr-miR5037c6_......_175
MIMAT0023151mtr-miR5037b6_......_175
MIMAT0023150mtr-miR5037a6_......_175
MIMAT0022817sha-miR-10a7......__275
MIMAT0022799sha-miR-10b7......__275
MIMAT0022651ola-miR-10b7......__275
MIMAT0022633ola-miR-10d7......__275
MIMAT0023058tur-miR-993a-5p7......__275
MIMAT0023054tur-miR-5729a-5p6......__175
MIMAT0023052tur-miR-993b-5p7......__275
MIMAT0023038tur-miR-5729b-5p6......__175
MIMAT0023026tur-miR-10-5p7......__275
MIMAT0022268hsa-miR-548as-3p8__......375
MIMAT0022044aca-miR-54241......__675
MIMAT0021721aca-miR-10c-5p7......__275
MIMAT0021719aca-miR-10b-5p7......__275
MIMAT0021717aca-miR-10a-5p7......__275
MIMAT0021605gma-miR5037b6_......_175
MIMAT0021531asu-miR-993-5p6......__175
MIMAT0021470asu-miR-76-5p3__......875
MIMAT0021464asu-miR-57-5p7......__275
MIMAT0021079hsa-miR-50871__......675
MIMAT0020536hme-miR-2788-5p3__......875
MIMAT0020262emu-miR-107......__275
MIMAT0020236egr-miR-107......__275
MIMAT0020134cel-miR-49273__......875
MIMAT0019629pma-miR-45961__......675
MIMAT0019378pma-miR-10a7......__275
MIMAT0019376pma-miR-10b-5p7......__275
MIMAT0018416nlo-miR-106......__175
MIMAT0018869tca-miR-3885-3p1__......675
MIMAT0018798tca-miR-2788-5p3__......875
MIMAT0018712tca-miR-2796-5p3__......875
MIMAT0018618tgu-miR-10a-5p7......__275
MIMAT0018564ame-miR-37857......__275
MIMAT0018001hsa-miR-3620-3p8......__375
MIMAT0017964ssc-miR-6528_......_375
MIMAT0022958ssc-miR-296-3p1_......_675
MIMAT0016626cin-miR-4069-5p8......__375
MIMAT0015810ppy-miR-296-3p2_......_775
MIMAT0015730ppy-miR-10b7......__275
MIMAT0015676nvi-miR-106......__175
MIMAT0014775api-miR-30383__......875
MIMAT0014404cqu-miR-10-5p6......__175
MIMAT0014375cqu-miR-993-5p7......__275
MIMAT0014277aae-miR-106......__175
MIMAT0014266aae-miR-9937......__275
MIMAT0014128api-miR-106......__175
MIMAT0014105bma-miR-577......__275
MIMAT0013885ssc-miR-10b7......__275
MIMAT0013884ssc-miR-10a-5p7......__275
MIMAT0013107eca-miR-2962_......_775
MIMAT0013090eca-miR-10b7......__275
MIMAT0013019eca-miR-10a7......__275
MIMAT0013696bmo-miR-2796-5p3__......875
MIMAT0013685bmo-miR-27883__......875
MIMAT0013623bmo-miR-2756-5p6......__175
MIMAT0013616bmo-miR-2755-3p7......__275
MIMAT0012682isc-miR-107......__275
MIMAT0012636dpu-miR-107......__275
MIMAT0013557cte-miR-26962__......775
MIMAT0013551cte-miR-19918......__375
MIMAT0012485dsi-miR-981-5p2__......775
MIMAT0012461dsi-miR-993-5p8......__375
MIMAT0012263dps-miR-993-5p8......__375
MIMAT0012219dps-miR-981-5p2__......775
MIMAT0011909bta-miR-2367-5p6......__175
MIMAT0011864bta-miR-2331-3p6......__175
MIMAT0011509crm-miR-577......__275
MIMAT0010144lmi-miR-10-5p7......__275
MIMAT0015297bmo-miR-993b-5p7......__275
MIMAT0019182tca-miR-993-5p7......__275
MIMAT0009798nve-miR-2038-5p6......__175
MIMAT0009611sko-miR-107......__275
MIMAT0009563lgi-miR-107......__275
MIMAT0009511cte-miR-10c7......__275
MIMAT0009510cte-miR-10b8......__375
MIMAT0009509cte-miR-10a7......__275
MIMAT0009469bfl-miR-10c7......__275
MIMAT0009466bfl-miR-10a-5p7......__275
MIMAT0009273bta-miR-296-3p2_......_775
MIMAT0009082dya-miR-106......__175
MIMAT0009033dwi-miR-106......__175
MIMAT0032098dvi-miR-219-3p1_......_675
MIMAT0008960dvi-miR-10-5p6......__175
MIMAT0008887dsi-miR-106......__175
MIMAT0008784dse-miR-106......__175
MIMAT0008754dpe-miR-106......__175
MIMAT0008693dmo-miR-106......__175
MIMAT0008601dgr-miR-106......__175
MIMAT0008549der-miR-106......__175
MIMAT0008476dan-miR-106......__175
MIMAT0008357tca-miR-10-5p7......__275
MIMAT0008079ptr-miR-2962_......_775
MIMAT0007945ptr-miR-10b7......__275
MIMAT0007944ptr-miR-10a7......__275
MIMAT0006737cfa-miR-10a7......__275
MIMAT0006252mml-miR-296-3p2_......_775
MIMAT0006162mml-miR-10b-5p7......__275
MIMAT0006161mml-miR-10a-5p7......__275
MIMAT0007731gga-miR-10a-5p7......__275
MIMAT0006044odi-miR-14916......__175
MIMAT0007218oan-miR-10b-5p7......__275
MIMAT0007122oan-miR-10a-5p7......__275
MIMAT0022940hsa-miR-1178-5p1......__675
MIMAT0017321rno-miR-652-5p8_......_375
MIMAT0005204ppt-miR10741_......_675
MIMAT0020893dme-miR-993-5p7......__275
MIMAT0020878dme-miR-981-5p2__......775
MIMAT0004419ame-miR-106......__175
MIMAT0004392cre-miR909.33......__875
MIMAT0004089mdo-miR-10a-5p7......__275
MIMAT0004234cel-miR-7998_......_375
MIMAT0003839bta-miR-10b7......__275
MIMAT0003786bta-miR-10a7......__275
MIMAT0004195bmo-miR-10-5p6......__175
MIMAT0003773fru-miR-10d7......__275
MIMAT0003772tni-miR-10d7......__275
MIMAT0017260mmu-miR-652-5p7_......_275
MIMAT0003559xtr-miR-10c7......__275
MIMAT0003558xtr-miR-10b7......__275
MIMAT0003557xtr-miR-10a7......__275
MIMAT0022709hsa-miR-652-5p7_......_275
MIMAT0004810hsa-miR-629-5p2__......775
MIMAT0003088tni-miR-10c7......__275
MIMAT0003087fru-miR-10c7......__275
MIMAT0002964tni-miR-10b7......__275
MIMAT0002963fru-miR-10b7......__275
MIMAT0002493ppa-miR-10b7......__275
MIMAT0002492mne-miR-10b7......__275
MIMAT0002491ggo-miR-10b7......__275
MIMAT0002490ppa-miR-10a7......__275
MIMAT0002489age-miR-10a7......__275
MIMAT0002488sla-miR-10a7......__275
MIMAT0002487ppy-miR-10a7......__275
MIMAT0002486ggo-miR-10a7......__275
MIMAT0001771dre-miR-10d-5p7......__275
MIMAT0001770dre-miR-10c-5p7......__275
MIMAT0001497aga-miR-106......__175
MIMAT0001268dre-miR-10b-5p7......__275
MIMAT0001267dre-miR-10a-5p7......__275
MIMAT0001214dps-miR-106......__175
MIMAT0001148gga-miR-10b-5p7......__275
MIMAT0031912ath-miR398c-5p1_......_675
MIMAT0031911ath-miR398b-5p1_......_675
MIMAT0004742rno-miR-296-3p2_......_775
MIMAT0000782rno-miR-10a-5p7......__275
MIMAT0004679hsa-miR-296-3p2_......_775
MIMAT0000648mmu-miR-10a-5p7......__275
MIMAT0000477cbr-miR-577......__275
MIMAT0004576mmu-miR-296-3p2_......_775
MIMAT0020803dme-miR-219-3p1_......_675
MIMAT0000254hsa-miR-10b-5p7......__275
MIMAT0000253hsa-miR-10a-5p7......__275
MIMAT0000208mmu-miR-10b-5p7......__275
MIMAT0000115dme-miR-10-5p6......__175
MIMAT0000029cel-miR-57-5p7......__275