| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cagtaga | 7 | ||
| MIMAT0035755 | bfv-miR-BF2-5p | 2 | ....... | 8 | 100 |
| MIMAT0032790 | cel-miR-8188-3p | 1 | ....... | 7 | 100 |
| MIMAT0008343 | ptr-miR-936 | 2 | ....... | 8 | 100 |
| MIMAT0004979 | hsa-miR-936 | 2 | ....... | 8 | 100 |
| MIMAT0037015 | ssc-miR-9797-3p | 1 | ......_ | 6 | 85 |
| MIMAT0036794 | oha-miR-199c-3p | 3 | ......_ | 8 | 85 |
| MIMAT0036490 | tch-miR-411-5p | 2 | _...... | 7 | 85 |
| MIMAT0036285 | chi-miR-665 | 3 | ......_ | 8 | 85 |
| MIMAT0036213 | chi-miR-411a-5p | 3 | _...... | 8 | 85 |
| MIMAT0035666 | bra-miR9556-3p | 6 | _...... | 1 | 85 |
| MIMAT0035579 | dvi-miR-958-5p | 1 | _...... | 6 | 85 |
| MIMAT0035501 | bdi-miR9492 | 8 | _...... | 3 | 85 |
| MIMAT0034946 | efu-miR-199 | 3 | ......_ | 8 | 85 |
| MIMAT0033699 | pxy-miR-8491 | 1 | _...... | 6 | 85 |
| MIMAT0033609 | sma-miR-8449-3p | 7 | _...... | 2 | 85 |
| MIMAT0033117 | ppc-miR-8300-5p | 3 | ......_ | 8 | 85 |
| MIMAT0031841 | cpa-miR8144 | 3 | ......_ | 8 | 85 |
| MIMAT0028451 | mmu-miR-7241-3p | 2 | _...... | 7 | 85 |
| MIMAT0028426 | mmu-miR-7229-5p | 2 | _...... | 7 | 85 |
| MIMAT0028025 | mmu-miR-7060-3p | 6 | _...... | 1 | 85 |
| MIMAT0027727 | mmu-miR-6913-3p | 8 | _...... | 3 | 85 |
| MIMAT0027564 | hsa-miR-6832-5p | 1 | _...... | 6 | 85 |
| MIMAT0025230 | ptc-miR6429 | 2 | _...... | 7 | 85 |
| MIMAT0025051 | rno-miR-3102 | 7 | _...... | 2 | 85 |
| MIMAT0024500 | mse-miR-2797b | 3 | _...... | 8 | 85 |
| MIMAT0024148 | ggo-miR-411 | 3 | _...... | 8 | 85 |
| MIMAT0022427 | ath-miR5655 | 2 | _...... | 7 | 85 |
| MIMAT0022345 | cin-miR-5609-5p | 3 | ......_ | 8 | 85 |
| MIMAT0022322 | cin-miR-5599-3p | 3 | ......_ | 8 | 85 |
| MIMAT0021247 | mtr-miR5251 | 1 | _...... | 6 | 85 |
| MIMAT0020464 | bfl-miR-4881 | 1 | _...... | 6 | 85 |
| MIMAT0020027 | sko-miR-4823-5p | 3 | _...... | 8 | 85 |
| MIMAT0019508 | pma-miR-199b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0019506 | pma-miR-199a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0019249 | oar-miR-411a-5p | 3 | _...... | 8 | 85 |
| MIMAT0019240 | oar-miR-665-3p | 3 | ......_ | 8 | 85 |
| MIMAT0018271 | gma-miR4370 | 1 | _...... | 6 | 85 |
| MIMAT0018232 | gma-miR4344 | 2 | _...... | 7 | 85 |
| MIMAT0016775 | cin-miR-4167-5p | 3 | _...... | 8 | 85 |
| MIMAT0016135 | ppy-miR-934 | 8 | _...... | 3 | 85 |
| MIMAT0015878 | ppy-miR-411 | 2 | _...... | 7 | 85 |
| MIMAT0015412 | bmo-miR-3230 | 1 | ......_ | 6 | 85 |
| MIMAT0014935 | mmu-miR-3102-3p.2-3p | 7 | _...... | 2 | 85 |
| MIMAT0013154 | eca-miR-411 | 2 | _...... | 7 | 85 |
| MIMAT0012445 | dsi-miR-958-5p | 1 | _...... | 6 | 85 |
| MIMAT0012231 | dps-miR-958-5p | 1 | _...... | 6 | 85 |
| MIMAT0011876 | bta-miR-2341 | 1 | ......_ | 6 | 85 |
| MIMAT0011871 | bta-miR-199c | 3 | ......_ | 8 | 85 |
| MIMAT0009363 | bta-miR-665 | 3 | ......_ | 8 | 85 |
| MIMAT0009312 | bta-miR-411a | 3 | _...... | 8 | 85 |
| MIMAT0008932 | dvi-miR-282-5p | 7 | _...... | 2 | 85 |
| MIMAT0008341 | ptr-miR-934 | 8 | _...... | 3 | 85 |
| MIMAT0008138 | ptr-miR-411 | 2 | _...... | 7 | 85 |
| MIMAT0007760 | ssc-miR-199b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0006716 | cfa-miR-411 | 3 | _...... | 8 | 85 |
| MIMAT0006536 | mml-miR-934-5p | 8 | _...... | 3 | 85 |
| MIMAT0006317 | mml-miR-411-5p | 2 | _...... | 7 | 85 |
| MIMAT0026849 | mml-miR-222-5p | 1 | ......_ | 6 | 85 |
| MIMAT0007583 | gga-miR-199b | 1 | ......_ | 6 | 85 |
| MIMAT0006065 | odi-miR-1505 | 1 | _...... | 6 | 85 |
| MIMAT0005312 | rno-miR-411-5p | 2 | _...... | 7 | 85 |
| MIMAT0005171 | ppt-miR1053-3p | 7 | _...... | 2 | 85 |
| MIMAT0020852 | dme-miR-958-5p | 1 | _...... | 6 | 85 |
| MIMAT0004977 | hsa-miR-934 | 8 | _...... | 3 | 85 |
| MIMAT0003619 | xtr-miR-199a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0003329 | hsa-miR-411-5p | 2 | _...... | 7 | 85 |
| MIMAT0003155 | dre-miR-199-3p | 3 | ......_ | 8 | 85 |
| MIMAT0003721 | gga-miR-199-3p | 3 | ......_ | 8 | 85 |
| MIMAT0026497 | gga-miR-20a-3p | 8 | _...... | 3 | 85 |
| MIMAT0004747 | mmu-miR-411-5p | 2 | _...... | 7 | 85 |
| MIMAT0004569 | hsa-miR-222-5p | 3 | ......_ | 8 | 85 |
