| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cagtgta | 7 | ||
| MIMAT0035233 | dme-miR-9385-5p | 2 | ....... | 8 | 100 |
| MIMAT0034784 | efu-miR-9199 | 7 | ....... | 1 | 100 |
| MIMAT0034109 | gra-miR8720 | 1 | ....... | 7 | 100 |
| MIMAT0025859 | blv-miR-B1-3p | 2 | ....... | 8 | 100 |
| MIMAT0013534 | cte-miR-10d | 7 | ....... | 1 | 100 |
| MIMAT0036807 | oha-miR-200a | 8 | ......_ | 3 | 85 |
| MIMAT0036793 | oha-miR-199c-5p | 3 | ......_ | 8 | 85 |
| MIMAT0036789 | oha-miR-199a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0036489 | tch-miR-141-3p | 8 | ......_ | 3 | 85 |
| MIMAT0036466 | tch-miR-200a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0036045 | chi-miR-200a | 8 | ......_ | 3 | 85 |
| MIMAT0036040 | chi-miR-199c-5p | 3 | ......_ | 8 | 85 |
| MIMAT0036038 | chi-miR-199b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0036036 | chi-miR-199a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0035962 | chi-miR-141 | 8 | ......_ | 3 | 85 |
| MIMAT0035642 | dvi-miR-9549-5p | 1 | ......_ | 6 | 85 |
| MIMAT0035427 | nve-miR-9468 | 3 | _...... | 8 | 85 |
| MIMAT0035097 | efu-miR-141 | 8 | ......_ | 3 | 85 |
| MIMAT0035013 | efu-miR-200a | 8 | ......_ | 3 | 85 |
| MIMAT0034975 | efu-miR-9302 | 3 | ......_ | 8 | 85 |
| MIMAT0034612 | eca-miR-9067 | 6 | _...... | 1 | 85 |
| MIMAT0034499 | eca-miR-8964 | 1 | _...... | 6 | 85 |
| MIMAT0034355 | cfa-miR-8860 | 6 | _...... | 1 | 85 |
| MIMAT0034007 | gra-miR8649 | 6 | ......_ | 1 | 85 |
| MIMAT0033831 | atr-miR8559 | 8 | ......_ | 3 | 85 |
| MIMAT0033679 | sma-miR-8479-5p | 3 | ......_ | 8 | 85 |
| MIMAT0032802 | cel-miR-8194-3p | 7 | _...... | 2 | 85 |
| MIMAT0032480 | ssa-miR-200b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0032460 | ssa-miR-199a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0031610 | bbe-miR-200c-3p | 8 | ......_ | 3 | 85 |
| MIMAT0030572 | prd-miR-5358b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0030358 | hhi-miR-199a | 3 | ......_ | 8 | 85 |
| MIMAT0029672 | cbn-miR-7630 | 7 | _...... | 2 | 85 |
| MIMAT0029453 | ipu-miR-200a | 8 | ......_ | 3 | 85 |
| MIMAT0029450 | ipu-miR-199a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0029418 | ipu-miR-141 | 8 | ......_ | 3 | 85 |
| MIMAT0028934 | mdo-miR-7398t-5p | 1 | _...... | 6 | 85 |
| MIMAT0028930 | mdo-miR-7398g-5p | 1 | _...... | 6 | 85 |
| MIMAT0028898 | mdo-miR-7398f-5p | 1 | _...... | 6 | 85 |
| MIMAT0028896 | mdo-miR-7398e-5p | 1 | _...... | 6 | 85 |
| MIMAT0028304 | mml-miR-7180-5p | 1 | _...... | 6 | 85 |
| MIMAT0026338 | bma-miR-5840 | 6 | ......_ | 1 | 85 |
| MIMAT0026258 | ccr-miR-200a | 8 | ......_ | 3 | 85 |
| MIMAT0026255 | ccr-miR-199-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028034 | mmu-miR-7065-5p | 1 | _...... | 6 | 85 |
| MIMAT0027421 | hsa-miR-6760-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025708 | gga-miR-6613-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025451 | hsa-miR-6499-3p | 3 | ......_ | 8 | 85 |
| MIMAT0025440 | pol-miR-199a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0025153 | mmu-miR-6401 | 7 | _...... | 2 | 85 |
| MIMAT0025120 | mmu-miR-6376 | 1 | ......_ | 6 | 85 |
| MIMAT0025101 | mmu-miR-6358 | 1 | ......_ | 6 | 85 |
| MIMAT0024300 | ggo-miR-200a | 8 | ......_ | 3 | 85 |
| MIMAT0023838 | cgr-miR-199b | 3 | ......_ | 8 | 85 |
| MIMAT0023836 | cgr-miR-199a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0023769 | cgr-miR-141 | 8 | ......_ | 3 | 85 |
| MIMAT0023497 | hco-miR-5985 | 8 | ......_ | 3 | 85 |
| MIMAT0022826 | sha-miR-141 | 8 | ......_ | 3 | 85 |
| MIMAT0022805 | sha-miR-200a | 8 | ......_ | 3 | 85 |
| MIMAT0022538 | ola-miR-199a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0021845 | aca-miR-200a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0021835 | aca-miR-199b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0021834 | aca-miR-199a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020636 | mmu-miR-3572-3p | 6 | _...... | 1 | 85 |
| MIMAT0020573 | bdi-miR5066 | 2 | _...... | 7 | 85 |
| MIMAT0020035 | sko-miR-4827b | 2 | _...... | 7 | 85 |
| MIMAT0020024 | sko-miR-2007-3p | 3 | ......_ | 8 | 85 |
| MIMAT0019628 | pma-miR-4595 | 1 | ......_ | 6 | 85 |
| MIMAT0019540 | pma-miR-338b | 3 | ......_ | 8 | 85 |
| MIMAT0019507 | pma-miR-199b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019505 | pma-miR-199a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018435 | nlo-miR-34 | 3 | ......_ | 8 | 85 |
| MIMAT0018390 | ngi-miR-34 | 3 | ......_ | 8 | 85 |
| MIMAT0018881 | tca-miR-3891-3p | 1 | _...... | 6 | 85 |
| MIMAT0018816 | tca-miR-279e-5p | 3 | ......_ | 8 | 85 |
| MIMAT0016911 | hsa-miR-4280 | 2 | _...... | 7 | 85 |
| MIMAT0016885 | hsa-miR-4255 | 1 | ......_ | 6 | 85 |
| MIMAT0017853 | rno-miR-3572 | 7 | _...... | 2 | 85 |
| MIMAT0015796 | ppy-miR-200a | 8 | ......_ | 3 | 85 |
| MIMAT0015792 | ppy-miR-199a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0014645 | tgu-miR-199-5p | 3 | ......_ | 8 | 85 |
| MIMAT0014545 | tgu-miR-200a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0013874 | ssc-miR-199a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0013780 | eca-miR-199b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0012970 | eca-miR-141 | 8 | ......_ | 3 | 85 |
| MIMAT0012960 | eca-miR-199a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0012909 | eca-miR-200a | 8 | ......_ | 3 | 85 |
| MIMAT0013709 | bmo-miR-2804-5p | 3 | _...... | 8 | 85 |
| MIMAT0013259 | mtr-miR2588b | 8 | ......_ | 3 | 85 |
| MIMAT0013258 | mtr-miR2588a | 8 | ......_ | 3 | 85 |
| MIMAT0012398 | dps-miR-2567c-5p | 3 | ......_ | 8 | 85 |
| MIMAT0011453 | cel-miR-2209b-5p | 1 | _...... | 6 | 85 |
| MIMAT0011433 | cel-miR-2209c-5p | 2 | _...... | 7 | 85 |
| MIMAT0011431 | cel-miR-2209a-5p | 2 | _...... | 7 | 85 |
| MIMAT0011429 | cel-miR-2208b-5p | 2 | _...... | 7 | 85 |
| MIMAT0011427 | cel-miR-2208a-5p | 2 | _...... | 7 | 85 |
| MIMAT0009493 | bfl-miR-200c | 8 | ......_ | 3 | 85 |
| MIMAT0009232 | bta-miR-141 | 8 | ......_ | 3 | 85 |
| MIMAT0019107 | tca-miR-33-3p | 1 | ......_ | 6 | 85 |
| MIMAT0008063 | ptr-miR-200a | 8 | ......_ | 3 | 85 |
| MIMAT0008036 | ptr-miR-141 | 8 | ......_ | 3 | 85 |
| MIMAT0017339 | ssc-miR-199b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0006233 | mml-miR-200a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0006231 | mml-miR-199a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0007612 | gga-miR-1715-3p | 8 | ......_ | 3 | 85 |
| MIMAT0006129 | csa-miR-141 | 8 | ......_ | 3 | 85 |
| MIMAT0006103 | cin-miR-141-3p | 8 | ......_ | 3 | 85 |
| MIMAT0006064 | odi-miR-1504 | 1 | _...... | 6 | 85 |
| MIMAT0006048 | odi-miR-1495 | 1 | _...... | 6 | 85 |
| MIMAT0007172 | oan-miR-199-5p | 3 | ......_ | 8 | 85 |
| MIMAT0026757 | oan-miR-1421j-3p | 6 | ......_ | 1 | 85 |
| MIMAT0006936 | oan-miR-200a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0020876 | dme-miR-979-5p | 6 | ......_ | 1 | 85 |
| MIMAT0004262 | ath-miR840-5p | 6 | ......_ | 1 | 85 |
| MIMAT0004158 | mdo-miR-200a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0004151 | mdo-miR-141-3p | 8 | ......_ | 3 | 85 |
| MIMAT0004125 | mdo-miR-199b-1-5p | 3 | ......_ | 8 | 85 |
| MIMAT0003822 | bta-miR-200a | 8 | ......_ | 3 | 85 |
| MIMAT0003821 | bta-miR-199b | 3 | ......_ | 8 | 85 |
| MIMAT0003693 | xtr-miR-200a | 8 | ......_ | 3 | 85 |
| MIMAT0003692 | xtr-miR-199b | 3 | ......_ | 8 | 85 |
| MIMAT0003618 | xtr-miR-199a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0003544 | bta-miR-199a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0002982 | tni-miR-200a | 8 | ......_ | 3 | 85 |
| MIMAT0002981 | fru-miR-200a | 8 | ......_ | 3 | 85 |
| MIMAT0002960 | tni-miR-199 | 3 | ......_ | 8 | 85 |
| MIMAT0002959 | fru-miR-199 | 3 | ......_ | 8 | 85 |
| MIMAT0002534 | mne-miR-199a | 3 | ......_ | 8 | 85 |
| MIMAT0002533 | lla-miR-199a | 3 | ......_ | 8 | 85 |
| MIMAT0002532 | sla-miR-199a | 3 | ......_ | 8 | 85 |
| MIMAT0002531 | mml-miR-199a | 3 | ......_ | 8 | 85 |
| MIMAT0002530 | ptr-miR-199a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0002529 | ppy-miR-199a | 3 | ......_ | 8 | 85 |
| MIMAT0002528 | ppa-miR-199a | 3 | ......_ | 8 | 85 |
| MIMAT0002527 | ggo-miR-199a | 3 | ......_ | 8 | 85 |
| MIMAT0001861 | dre-miR-200a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0001837 | dre-miR-141-3p | 8 | ......_ | 3 | 85 |
| MIMAT0001277 | dre-miR-199-5p | 3 | ......_ | 8 | 85 |
| MIMAT0001171 | gga-miR-200a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0001152 | gga-miR-199-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000874 | rno-miR-200a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0000872 | rno-miR-199a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000846 | rno-miR-141-3p | 8 | ......_ | 3 | 85 |
| MIMAT0000682 | hsa-miR-200a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0000672 | mmu-miR-199b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000519 | mmu-miR-200a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0000432 | hsa-miR-141-3p | 8 | ......_ | 3 | 85 |
| MIMAT0000263 | hsa-miR-199b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000231 | hsa-miR-199a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000229 | mmu-miR-199a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000153 | mmu-miR-141-3p | 8 | ......_ | 3 | 85 |
