Result for your query miRNA sequence
>rrv-miR-rr1-15-3p
caguguug

RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numbermiRNAStartAlignmentEnd% Identity
Query1cagtgttg8
MIMAT0030572prd-miR-5358b-5p1........8100
MIMAT0037226ata-miR2275c-5p1_.......787
MIMAT0036807oha-miR-200a8......._287
MIMAT0036489tch-miR-141-3p8......._287
MIMAT0036466tch-miR-200a-3p8......._287
MIMAT0036269chi-miR-505-3p8_.......287
MIMAT0036045chi-miR-200a8......._287
MIMAT0035962chi-miR-1418......._287
MIMAT0035642dvi-miR-9549-5p1......._787
MIMAT0035097efu-miR-1418......._287
MIMAT0035013efu-miR-200a8......._287
MIMAT0034544eca-miR-90042......._887
MIMAT0032480ssa-miR-200b-3p8......._287
MIMAT0031610bbe-miR-200c-3p8......._287
MIMAT0030042oar-miR-200a7......._187
MIMAT0029453ipu-miR-200a8......._287
MIMAT0029418ipu-miR-1418......._287
MIMAT0031066mdo-miR-199b-3-5p2......._887
MIMAT0031065mdo-miR-199b-2-5p2......._887
MIMAT0026258ccr-miR-200a8......._287
MIMAT0027415hsa-miR-6757-3p7......._187
MIMAT0025103mmu-miR-63602_.......887
MIMAT0024300ggo-miR-200a8......._287
MIMAT0023769cgr-miR-1418......._287
MIMAT0023497hco-miR-59858......._287
MIMAT0023191gma-miR57852_.......887
MIMAT0022826sha-miR-1418......._287
MIMAT0022805sha-miR-200a8......._287
MIMAT0022571ola-miR-200a7......._187
MIMAT0021845aca-miR-200a-3p8......._287
MIMAT0019628pma-miR-45951......._787
MIMAT0016885hsa-miR-42551......._787
MIMAT0017895rno-miR-35922_.......887
MIMAT0017883rno-miR-35877......._187
MIMAT0015796ppy-miR-200a8......._287
MIMAT0014545tgu-miR-200a-3p8......._287
MIMAT0013961ssc-miR-5058_.......287
MIMAT0012970eca-miR-1418......._287
MIMAT0012909eca-miR-200a8......._287
MIMAT0013259mtr-miR2588b8......._287
MIMAT0013258mtr-miR2588a8......._287
MIMAT0009876cfa-miR-1417......._187
MIMAT0009493bfl-miR-200c8......._287
MIMAT0009232bta-miR-1418......._287
MIMAT0008063ptr-miR-200a8......._287
MIMAT0008036ptr-miR-1418......._287
MIMAT0006233mml-miR-200a-3p8......._287
MIMAT0006129csa-miR-1418......._287
MIMAT0006103cin-miR-141-3p8......._287
MIMAT0026760oan-miR-1398-3p1_.......787
MIMAT0006936oan-miR-200a-3p8......._287
MIMAT0004477mdv2-miR-M30-5p7_.......187
MIMAT0020904dme-miR-1007-5p2......._887
MIMAT0004158mdo-miR-200a-3p8......._287
MIMAT0004151mdo-miR-141-3p8......._287
MIMAT0003822bta-miR-200a8......._287
MIMAT0003693xtr-miR-200a8......._287
MIMAT0002982tni-miR-200a8......._287
MIMAT0002981fru-miR-200a8......._287
MIMAT0002201ppa-miR-1417......._187
MIMAT0002200ppy-miR-1417......._187
MIMAT0002198ggo-miR-1417......._187
MIMAT0002196mml-miR-141-3p7......._187
MIMAT0002179kshv-miR-K12-10a-3p2_.......887
MIMAT0001861dre-miR-200a-3p8......._287
MIMAT0001837dre-miR-141-3p8......._287
MIMAT0001171gga-miR-200a-3p8......._287
MIMAT0000874rno-miR-200a-3p8......._287
MIMAT0000846rno-miR-141-3p8......._287
MIMAT0000682hsa-miR-200a-3p8......._287
MIMAT0000519mmu-miR-200a-3p8......._287
MIMAT0000432hsa-miR-141-3p8......._287
MIMAT0000153mmu-miR-141-3p8......._287
MIMAT0034109gra-miR87201......a.887
MIMAT0025120mmu-miR-63761......g.887
MIMAT0025101mmu-miR-63581......g.887
MIMAT0023403hco-miR-5924a-5p8.t......187
MIMAT0037151ata-miR395b-3p2_......_775
MIMAT0037110ata-miR2275a-5p3_......_875
MIMAT0036793oha-miR-199c-5p3......__875
MIMAT0036789oha-miR-199a-5p3......__875
MIMAT0036470tch-miR-1423_......_875
MIMAT0036383gma-miR9746i3_......_875
MIMAT0036373gma-miR9746h3_......_875
MIMAT0036372gma-miR9746g3_......_875
MIMAT0036371gma-miR9746f3_......_875
MIMAT0036370gma-miR9746e3_......_875
MIMAT0036369gma-miR9746d3_......_875
MIMAT0036368gma-miR9746c3_......_875
MIMAT0036367gma-miR9746b3_......_875
MIMAT0036366gma-miR9746a3_......_875
MIMAT0036362gma-miR97422__......775
MIMAT0036040chi-miR-199c-5p3......__875
MIMAT0036038chi-miR-199b-5p3......__875
MIMAT0036036chi-miR-199a-5p3......__875
MIMAT0035233dme-miR-9385-5p2......__775
MIMAT0034975efu-miR-93023......__875
MIMAT0034784efu-miR-91997......__275
MIMAT0034735eca-miR-91583_......_875
MIMAT0034477eca-miR-89483__......875
MIMAT0034273psj-miR8788b-3p1__......675
MIMAT0034271psj-miR8788a-3p1__......675
MIMAT0034007gra-miR86496......__175
MIMAT0033831atr-miR85598......__375
MIMAT0033679sma-miR-8479-5p3......__875
MIMAT0033525sma-miR-8410-3p1_......_675
MIMAT0033115ppc-miR-8299-5p2_......_775
MIMAT0032781ath-miR81823__......875
MIMAT0032460ssa-miR-199a-5p3......__875
MIMAT0032362ssa-miR-142a-3p1_......_675
MIMAT0031577bbe-miR-124-5p1_......_675
MIMAT0030733prd-miR-7937-3p6_......_175
MIMAT0030358hhi-miR-199a3......__875
MIMAT0029450ipu-miR-199a-5p3......__875
MIMAT0029419ipu-miR-1423_......_875
MIMAT0029043gga-miR-7444-3p1_......_675
MIMAT0029026oan-miR-7436-5p2_......_775
MIMAT0028750mdo-miR-1545b-5p1_......_675
MIMAT0028663mdo-miR-505-3p8__......375
MIMAT0028425mmu-miR-7228-3p1_......_675
MIMAT0028271mml-miR-7168-3p1_......_675
MIMAT0026338bma-miR-58406......__175
MIMAT0026255ccr-miR-199-5p3......__875
MIMAT0026223ccr-miR-142-3p3_......_875
MIMAT0028085mmu-miR-7089-3p2......__775
MIMAT0027421hsa-miR-6760-3p6......__175
MIMAT0027368hsa-miR-6733-3p2......__775
MIMAT0025859blv-miR-B1-3p2......__775
MIMAT0025708gga-miR-6613-3p6......__175
MIMAT0025627gga-miR-6560-5p2__......775
MIMAT0025614gga-miR-6553-3p6_......_175
MIMAT0025451hsa-miR-6499-3p3......__875
MIMAT0025440pol-miR-199a-5p3......__875
MIMAT0024228ggo-miR-5058__......375
MIMAT0023980cgr-miR-505-3p8__......375
MIMAT0023838cgr-miR-199b3......__875
MIMAT0023836cgr-miR-199a-5p3......__875
MIMAT0023771cgr-miR-142-3p3_......_875
MIMAT0023462hco-miR-5886b7_......_275
MIMAT0022538ola-miR-199a-5p3......__875
MIMAT0021835aca-miR-199b-5p3......__875
MIMAT0021834aca-miR-199a-5p3......__875
MIMAT0020723bdi-miR395d-3p2_......_775
MIMAT0020202dme-miR-4973-3p8__......375
MIMAT0020033sko-miR-4826-3p8__......375
MIMAT0020024sko-miR-2007-3p3......__875
MIMAT0019540pma-miR-338b3......__875
MIMAT0019507pma-miR-199b-5p3......__875
MIMAT0019505pma-miR-199a-5p3......__875
MIMAT0018435nlo-miR-343......__875
MIMAT0018390ngi-miR-343......__875
MIMAT0018229gma-miR43412__......775
MIMAT0018816tca-miR-279e-5p3......__875
MIMAT0018080hsa-miR-36593_......_875
MIMAT0016937bta-miR-36021__......675
MIMAT0016855hsa-miR-43022......__775
MIMAT0016737cin-miR-4139-3p3_......_875
MIMAT0016713cin-miR-4121-3p1__......675
MIMAT0016670cin-miR-4092-5p2__......775
MIMAT0016611cin-miR-4061-3p6_......_175
MIMAT0016086ppy-miR-6531__......675
MIMAT0016050ppy-miR-6093_......_875
MIMAT0015792ppy-miR-199a-5p3......__875
MIMAT0014645tgu-miR-199-5p3......__875
MIMAT0026999tgu-miR-142-3p3_......_875
MIMAT0017389tgu-miR-338-5p6_......_175
MIMAT0013874ssc-miR-199a-5p3......__875
MIMAT0013780eca-miR-199b-5p3......__875
MIMAT0012960eca-miR-199a-5p3......__875
MIMAT0012947eca-miR-6531__......675
MIMAT0012632bmo-miR-27528__......375
MIMAT0013534cte-miR-10d7......__275
MIMAT0012501dsi-miR-9758_......_375
MIMAT0012398dps-miR-2567c-5p3......__875
MIMAT0011285sme-miR-21557......__275
MIMAT0009924cfa-miR-6531__......675
MIMAT0009624sko-miR-124-5p1_......_675
MIMAT0019146bfl-miR-124-5p1_......_675
MIMAT0009358bta-miR-6531__......675
MIMAT0009102dya-miR-2872__......775
MIMAT0009003dwi-miR-2872__......775
MIMAT0008930dvi-miR-2872__......775
MIMAT0008899dsi-miR-2872__......775
MIMAT0008770dse-miR-2872__......775
MIMAT0008757dpe-miR-2872__......775
MIMAT0008659dmo-miR-2872__......775
MIMAT0008563dgr-miR-2872__......775
MIMAT0008483der-miR-2872__......775
MIMAT0008424dan-miR-2872__......775
MIMAT0019114tca-miR-124-5p1_......_675
MIMAT0019107tca-miR-33-3p1......__675
MIMAT0008303ptr-miR-6531__......675
MIMAT0017339ssc-miR-199b-5p3......__875
MIMAT0006494mml-miR-653-5p1__......675
MIMAT0006231mml-miR-199a-5p3......__875
MIMAT0007612gga-miR-1715-3p8......__375
MIMAT0007378gma-miR15193_......_875
MIMAT0007377gma-miR15182__......775
MIMAT0007172oan-miR-199-5p3......__875
MIMAT0026757oan-miR-1421j-3p6......__175
MIMAT0005233smo-miR1082b1__......675
MIMAT0020876dme-miR-979-5p6......__175
MIMAT0005491dme-miR-975-5p8_......_375
MIMAT0004943mmu-miR-653-5p1__......675
MIMAT0004262ath-miR840-5p6......__175
MIMAT0004125mdo-miR-199b-1-5p3......__875
MIMAT0012109sme-miR-87a-5p6_......_175
MIMAT0003821bta-miR-199b3......__875
MIMAT0003791bta-miR-142-3p1_......_675
MIMAT0003692xtr-miR-199b3......__875
MIMAT0003618xtr-miR-199a-5p3......__875
MIMAT0003544bta-miR-199a-5p3......__875
MIMAT0003419ebv-miR-BART9-3p7_......_275
MIMAT0003380rno-miR-505-3p8__......375
MIMAT0003328hsa-miR-653-5p1__......675
MIMAT0002960tni-miR-1993......__875
MIMAT0002959fru-miR-1993......__875
MIMAT0002534mne-miR-199a3......__875
MIMAT0002533lla-miR-199a3......__875
MIMAT0002532sla-miR-199a3......__875
MIMAT0002531mml-miR-199a3......__875
MIMAT0002530ptr-miR-199a-5p3......__875
MIMAT0002529ppy-miR-199a3......__875
MIMAT0002528ppa-miR-199a3......__875
MIMAT0002527ggo-miR-199a3......__875
MIMAT0026573mml-miR-21-3p6__......175
MIMAT0002180kshv-miR-K12-10b3__......875
MIMAT0001277dre-miR-199-5p3......__875
MIMAT0001251dps-miR-2872__......775
MIMAT0001152gga-miR-199-5p3......__875
MIMAT0000872rno-miR-199a-5p3......__875
MIMAT0000672mmu-miR-199b-5p3......__875
MIMAT0000360dme-miR-287-3p2__......775
MIMAT0000263hsa-miR-199b-5p3......__875
MIMAT0000231hsa-miR-199a-5p3......__875
MIMAT0000229mmu-miR-199a-5p3......__875
MIMAT0004494hsa-miR-21-3p6__......175