VIRmiRNA | Resource for experimental viral miRNA and their targets

Result for your query miRNA sequence
>rrv-miR-rr1-15-3p
caguguug

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	miRNA	Start	Alignment	End	% Identity
Query		1	`cagtgttg`	8
MIMAT0030572	prd-miR-5358b-5p	1	`........`	8	100
MIMAT0037226	ata-miR2275c-5p	1	`_.......`	7	87
MIMAT0036807	oha-miR-200a	8	`......._`	2	87
MIMAT0036489	tch-miR-141-3p	8	`......._`	2	87
MIMAT0036466	tch-miR-200a-3p	8	`......._`	2	87
MIMAT0036269	chi-miR-505-3p	8	`_.......`	2	87
MIMAT0036045	chi-miR-200a	8	`......._`	2	87
MIMAT0035962	chi-miR-141	8	`......._`	2	87
MIMAT0035642	dvi-miR-9549-5p	1	`......._`	7	87
MIMAT0035097	efu-miR-141	8	`......._`	2	87
MIMAT0035013	efu-miR-200a	8	`......._`	2	87
MIMAT0034544	eca-miR-9004	2	`......._`	8	87
MIMAT0032480	ssa-miR-200b-3p	8	`......._`	2	87
MIMAT0031610	bbe-miR-200c-3p	8	`......._`	2	87
MIMAT0030042	oar-miR-200a	7	`......._`	1	87
MIMAT0029453	ipu-miR-200a	8	`......._`	2	87
MIMAT0029418	ipu-miR-141	8	`......._`	2	87
MIMAT0031066	mdo-miR-199b-3-5p	2	`......._`	8	87
MIMAT0031065	mdo-miR-199b-2-5p	2	`......._`	8	87
MIMAT0026258	ccr-miR-200a	8	`......._`	2	87
MIMAT0027415	hsa-miR-6757-3p	7	`......._`	1	87
MIMAT0025103	mmu-miR-6360	2	`_.......`	8	87
MIMAT0024300	ggo-miR-200a	8	`......._`	2	87
MIMAT0023769	cgr-miR-141	8	`......._`	2	87
MIMAT0023497	hco-miR-5985	8	`......._`	2	87
MIMAT0023191	gma-miR5785	2	`_.......`	8	87
MIMAT0022826	sha-miR-141	8	`......._`	2	87
MIMAT0022805	sha-miR-200a	8	`......._`	2	87
MIMAT0022571	ola-miR-200a	7	`......._`	1	87
MIMAT0021845	aca-miR-200a-3p	8	`......._`	2	87
MIMAT0019628	pma-miR-4595	1	`......._`	7	87
MIMAT0016885	hsa-miR-4255	1	`......._`	7	87
MIMAT0017895	rno-miR-3592	2	`_.......`	8	87
MIMAT0017883	rno-miR-3587	7	`......._`	1	87
MIMAT0015796	ppy-miR-200a	8	`......._`	2	87
MIMAT0014545	tgu-miR-200a-3p	8	`......._`	2	87
MIMAT0013961	ssc-miR-505	8	`_.......`	2	87
MIMAT0012970	eca-miR-141	8	`......._`	2	87
MIMAT0012909	eca-miR-200a	8	`......._`	2	87
MIMAT0013259	mtr-miR2588b	8	`......._`	2	87
MIMAT0013258	mtr-miR2588a	8	`......._`	2	87
MIMAT0009876	cfa-miR-141	7	`......._`	1	87
MIMAT0009493	bfl-miR-200c	8	`......._`	2	87
MIMAT0009232	bta-miR-141	8	`......._`	2	87
MIMAT0008063	ptr-miR-200a	8	`......._`	2	87
MIMAT0008036	ptr-miR-141	8	`......._`	2	87
MIMAT0006233	mml-miR-200a-3p	8	`......._`	2	87
MIMAT0006129	csa-miR-141	8	`......._`	2	87
MIMAT0006103	cin-miR-141-3p	8	`......._`	2	87
MIMAT0026760	oan-miR-1398-3p	1	`_.......`	7	87
MIMAT0006936	oan-miR-200a-3p	8	`......._`	2	87
MIMAT0004477	mdv2-miR-M30-5p	7	`_.......`	1	87
MIMAT0020904	dme-miR-1007-5p	2	`......._`	8	87
MIMAT0004158	mdo-miR-200a-3p	8	`......._`	2	87
MIMAT0004151	mdo-miR-141-3p	8	`......._`	2	87
MIMAT0003822	bta-miR-200a	8	`......._`	2	87
MIMAT0003693	xtr-miR-200a	8	`......._`	2	87
MIMAT0002982	tni-miR-200a	8	`......._`	2	87
MIMAT0002981	fru-miR-200a	8	`......._`	2	87
MIMAT0002201	ppa-miR-141	7	`......._`	1	87
MIMAT0002200	ppy-miR-141	7	`......._`	1	87
MIMAT0002198	ggo-miR-141	7	`......._`	1	87
MIMAT0002196	mml-miR-141-3p	7	`......._`	1	87
MIMAT0002179	kshv-miR-K12-10a-3p	2	`_.......`	8	87
MIMAT0001861	dre-miR-200a-3p	8	`......._`	2	87
MIMAT0001837	dre-miR-141-3p	8	`......._`	2	87
MIMAT0001171	gga-miR-200a-3p	8	`......._`	2	87
MIMAT0000874	rno-miR-200a-3p	8	`......._`	2	87
MIMAT0000846	rno-miR-141-3p	8	`......._`	2	87
MIMAT0000682	hsa-miR-200a-3p	8	`......._`	2	87
MIMAT0000519	mmu-miR-200a-3p	8	`......._`	2	87
MIMAT0000432	hsa-miR-141-3p	8	`......._`	2	87
MIMAT0000153	mmu-miR-141-3p	8	`......._`	2	87
MIMAT0034109	gra-miR8720	1	`......a.`	8	87
MIMAT0025120	mmu-miR-6376	1	`......g.`	8	87
MIMAT0025101	mmu-miR-6358	1	`......g.`	8	87
MIMAT0023403	hco-miR-5924a-5p	8	`.t......`	1	87
MIMAT0037151	ata-miR395b-3p	2	`_......_`	7	75
MIMAT0037110	ata-miR2275a-5p	3	`_......_`	8	75
MIMAT0036793	oha-miR-199c-5p	3	`......__`	8	75
MIMAT0036789	oha-miR-199a-5p	3	`......__`	8	75
MIMAT0036470	tch-miR-142	3	`_......_`	8	75
MIMAT0036383	gma-miR9746i	3	`_......_`	8	75
MIMAT0036373	gma-miR9746h	3	`_......_`	8	75
MIMAT0036372	gma-miR9746g	3	`_......_`	8	75
MIMAT0036371	gma-miR9746f	3	`_......_`	8	75
MIMAT0036370	gma-miR9746e	3	`_......_`	8	75
MIMAT0036369	gma-miR9746d	3	`_......_`	8	75
MIMAT0036368	gma-miR9746c	3	`_......_`	8	75
MIMAT0036367	gma-miR9746b	3	`_......_`	8	75
MIMAT0036366	gma-miR9746a	3	`_......_`	8	75
MIMAT0036362	gma-miR9742	2	`__......`	7	75
MIMAT0036040	chi-miR-199c-5p	3	`......__`	8	75
MIMAT0036038	chi-miR-199b-5p	3	`......__`	8	75
MIMAT0036036	chi-miR-199a-5p	3	`......__`	8	75
MIMAT0035233	dme-miR-9385-5p	2	`......__`	7	75
MIMAT0034975	efu-miR-9302	3	`......__`	8	75
MIMAT0034784	efu-miR-9199	7	`......__`	2	75
MIMAT0034735	eca-miR-9158	3	`_......_`	8	75
MIMAT0034477	eca-miR-8948	3	`__......`	8	75
MIMAT0034273	psj-miR8788b-3p	1	`__......`	6	75
MIMAT0034271	psj-miR8788a-3p	1	`__......`	6	75
MIMAT0034007	gra-miR8649	6	`......__`	1	75
MIMAT0033831	atr-miR8559	8	`......__`	3	75
MIMAT0033679	sma-miR-8479-5p	3	`......__`	8	75
MIMAT0033525	sma-miR-8410-3p	1	`_......_`	6	75
MIMAT0033115	ppc-miR-8299-5p	2	`_......_`	7	75
MIMAT0032781	ath-miR8182	3	`__......`	8	75
MIMAT0032460	ssa-miR-199a-5p	3	`......__`	8	75
MIMAT0032362	ssa-miR-142a-3p	1	`_......_`	6	75
MIMAT0031577	bbe-miR-124-5p	1	`_......_`	6	75
MIMAT0030733	prd-miR-7937-3p	6	`_......_`	1	75
MIMAT0030358	hhi-miR-199a	3	`......__`	8	75
MIMAT0029450	ipu-miR-199a-5p	3	`......__`	8	75
MIMAT0029419	ipu-miR-142	3	`_......_`	8	75
MIMAT0029043	gga-miR-7444-3p	1	`_......_`	6	75
MIMAT0029026	oan-miR-7436-5p	2	`_......_`	7	75
MIMAT0028750	mdo-miR-1545b-5p	1	`_......_`	6	75
MIMAT0028663	mdo-miR-505-3p	8	`__......`	3	75
MIMAT0028425	mmu-miR-7228-3p	1	`_......_`	6	75
MIMAT0028271	mml-miR-7168-3p	1	`_......_`	6	75
MIMAT0026338	bma-miR-5840	6	`......__`	1	75
MIMAT0026255	ccr-miR-199-5p	3	`......__`	8	75
MIMAT0026223	ccr-miR-142-3p	3	`_......_`	8	75
MIMAT0028085	mmu-miR-7089-3p	2	`......__`	7	75
MIMAT0027421	hsa-miR-6760-3p	6	`......__`	1	75
MIMAT0027368	hsa-miR-6733-3p	2	`......__`	7	75
MIMAT0025859	blv-miR-B1-3p	2	`......__`	7	75
MIMAT0025708	gga-miR-6613-3p	6	`......__`	1	75
MIMAT0025627	gga-miR-6560-5p	2	`__......`	7	75
MIMAT0025614	gga-miR-6553-3p	6	`_......_`	1	75
MIMAT0025451	hsa-miR-6499-3p	3	`......__`	8	75
MIMAT0025440	pol-miR-199a-5p	3	`......__`	8	75
MIMAT0024228	ggo-miR-505	8	`__......`	3	75
MIMAT0023980	cgr-miR-505-3p	8	`__......`	3	75
MIMAT0023838	cgr-miR-199b	3	`......__`	8	75
MIMAT0023836	cgr-miR-199a-5p	3	`......__`	8	75
MIMAT0023771	cgr-miR-142-3p	3	`_......_`	8	75
MIMAT0023462	hco-miR-5886b	7	`_......_`	2	75
MIMAT0022538	ola-miR-199a-5p	3	`......__`	8	75
MIMAT0021835	aca-miR-199b-5p	3	`......__`	8	75
MIMAT0021834	aca-miR-199a-5p	3	`......__`	8	75
MIMAT0020723	bdi-miR395d-3p	2	`_......_`	7	75
MIMAT0020202	dme-miR-4973-3p	8	`__......`	3	75
MIMAT0020033	sko-miR-4826-3p	8	`__......`	3	75
MIMAT0020024	sko-miR-2007-3p	3	`......__`	8	75
MIMAT0019540	pma-miR-338b	3	`......__`	8	75
MIMAT0019507	pma-miR-199b-5p	3	`......__`	8	75
MIMAT0019505	pma-miR-199a-5p	3	`......__`	8	75
MIMAT0018435	nlo-miR-34	3	`......__`	8	75
MIMAT0018390	ngi-miR-34	3	`......__`	8	75
MIMAT0018229	gma-miR4341	2	`__......`	7	75
MIMAT0018816	tca-miR-279e-5p	3	`......__`	8	75
MIMAT0018080	hsa-miR-3659	3	`_......_`	8	75
MIMAT0016937	bta-miR-3602	1	`__......`	6	75
MIMAT0016855	hsa-miR-4302	2	`......__`	7	75
MIMAT0016737	cin-miR-4139-3p	3	`_......_`	8	75
MIMAT0016713	cin-miR-4121-3p	1	`__......`	6	75
MIMAT0016670	cin-miR-4092-5p	2	`__......`	7	75
MIMAT0016611	cin-miR-4061-3p	6	`_......_`	1	75
MIMAT0016086	ppy-miR-653	1	`__......`	6	75
MIMAT0016050	ppy-miR-609	3	`_......_`	8	75
MIMAT0015792	ppy-miR-199a-5p	3	`......__`	8	75
MIMAT0014645	tgu-miR-199-5p	3	`......__`	8	75
MIMAT0026999	tgu-miR-142-3p	3	`_......_`	8	75
MIMAT0017389	tgu-miR-338-5p	6	`_......_`	1	75
MIMAT0013874	ssc-miR-199a-5p	3	`......__`	8	75
MIMAT0013780	eca-miR-199b-5p	3	`......__`	8	75
MIMAT0012960	eca-miR-199a-5p	3	`......__`	8	75
MIMAT0012947	eca-miR-653	1	`__......`	6	75
MIMAT0012632	bmo-miR-2752	8	`__......`	3	75
MIMAT0013534	cte-miR-10d	7	`......__`	2	75
MIMAT0012501	dsi-miR-975	8	`_......_`	3	75
MIMAT0012398	dps-miR-2567c-5p	3	`......__`	8	75
MIMAT0011285	sme-miR-2155	7	`......__`	2	75
MIMAT0009924	cfa-miR-653	1	`__......`	6	75
MIMAT0009624	sko-miR-124-5p	1	`_......_`	6	75
MIMAT0019146	bfl-miR-124-5p	1	`_......_`	6	75
MIMAT0009358	bta-miR-653	1	`__......`	6	75
MIMAT0009102	dya-miR-287	2	`__......`	7	75
MIMAT0009003	dwi-miR-287	2	`__......`	7	75
MIMAT0008930	dvi-miR-287	2	`__......`	7	75
MIMAT0008899	dsi-miR-287	2	`__......`	7	75
MIMAT0008770	dse-miR-287	2	`__......`	7	75
MIMAT0008757	dpe-miR-287	2	`__......`	7	75
MIMAT0008659	dmo-miR-287	2	`__......`	7	75
MIMAT0008563	dgr-miR-287	2	`__......`	7	75
MIMAT0008483	der-miR-287	2	`__......`	7	75
MIMAT0008424	dan-miR-287	2	`__......`	7	75
MIMAT0019114	tca-miR-124-5p	1	`_......_`	6	75
MIMAT0019107	tca-miR-33-3p	1	`......__`	6	75
MIMAT0008303	ptr-miR-653	1	`__......`	6	75
MIMAT0017339	ssc-miR-199b-5p	3	`......__`	8	75
MIMAT0006494	mml-miR-653-5p	1	`__......`	6	75
MIMAT0006231	mml-miR-199a-5p	3	`......__`	8	75
MIMAT0007612	gga-miR-1715-3p	8	`......__`	3	75
MIMAT0007378	gma-miR1519	3	`_......_`	8	75
MIMAT0007377	gma-miR1518	2	`__......`	7	75
MIMAT0007172	oan-miR-199-5p	3	`......__`	8	75
MIMAT0026757	oan-miR-1421j-3p	6	`......__`	1	75
MIMAT0005233	smo-miR1082b	1	`__......`	6	75
MIMAT0020876	dme-miR-979-5p	6	`......__`	1	75
MIMAT0005491	dme-miR-975-5p	8	`_......_`	3	75
MIMAT0004943	mmu-miR-653-5p	1	`__......`	6	75
MIMAT0004262	ath-miR840-5p	6	`......__`	1	75
MIMAT0004125	mdo-miR-199b-1-5p	3	`......__`	8	75
MIMAT0012109	sme-miR-87a-5p	6	`_......_`	1	75
MIMAT0003821	bta-miR-199b	3	`......__`	8	75
MIMAT0003791	bta-miR-142-3p	1	`_......_`	6	75
MIMAT0003692	xtr-miR-199b	3	`......__`	8	75
MIMAT0003618	xtr-miR-199a-5p	3	`......__`	8	75
MIMAT0003544	bta-miR-199a-5p	3	`......__`	8	75
MIMAT0003419	ebv-miR-BART9-3p	7	`_......_`	2	75
MIMAT0003380	rno-miR-505-3p	8	`__......`	3	75
MIMAT0003328	hsa-miR-653-5p	1	`__......`	6	75
MIMAT0002960	tni-miR-199	3	`......__`	8	75
MIMAT0002959	fru-miR-199	3	`......__`	8	75
MIMAT0002534	mne-miR-199a	3	`......__`	8	75
MIMAT0002533	lla-miR-199a	3	`......__`	8	75
MIMAT0002532	sla-miR-199a	3	`......__`	8	75
MIMAT0002531	mml-miR-199a	3	`......__`	8	75
MIMAT0002530	ptr-miR-199a-5p	3	`......__`	8	75
MIMAT0002529	ppy-miR-199a	3	`......__`	8	75
MIMAT0002528	ppa-miR-199a	3	`......__`	8	75
MIMAT0002527	ggo-miR-199a	3	`......__`	8	75
MIMAT0026573	mml-miR-21-3p	6	`__......`	1	75
MIMAT0002180	kshv-miR-K12-10b	3	`__......`	8	75
MIMAT0001277	dre-miR-199-5p	3	`......__`	8	75
MIMAT0001251	dps-miR-287	2	`__......`	7	75
MIMAT0001152	gga-miR-199-5p	3	`......__`	8	75
MIMAT0000872	rno-miR-199a-5p	3	`......__`	8	75
MIMAT0000672	mmu-miR-199b-5p	3	`......__`	8	75
MIMAT0000360	dme-miR-287-3p	2	`__......`	7	75
MIMAT0000263	hsa-miR-199b-5p	3	`......__`	8	75
MIMAT0000231	hsa-miR-199a-5p	3	`......__`	8	75
MIMAT0000229	mmu-miR-199a-5p	3	`......__`	8	75
MIMAT0004494	hsa-miR-21-3p	6	`__......`	1	75