| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | catgaaac | 8 | ||
| MIMAT0033573 | sma-miR-8434-3p | 8 | ........ | 1 | 100 |
| MIMAT0003448 | rlcv-miR-rL1-16-3p | 1 | ........ | 8 | 100 |
| MIMAT0035363 | bol-miR9408 | 7 | _....... | 1 | 87 |
| MIMAT0033113 | ppc-miR-8298-5p | 8 | _....... | 2 | 87 |
| MIMAT0031198 | stu-miR8015-3p | 7 | _....... | 1 | 87 |
| MIMAT0029859 | mmu-miR-7675-3p | 8 | _....... | 2 | 87 |
| MIMAT0029151 | ghr-miR7504a | 2 | _....... | 8 | 87 |
| MIMAT0022164 | osa-miR5529 | 7 | _....... | 1 | 87 |
| MIMAT0020185 | dme-miR-4963-5p | 8 | _....... | 2 | 87 |
| MIMAT0016745 | cin-miR-4143-3p | 1 | ......._ | 7 | 87 |
| MIMAT0013362 | mtr-miR2628 | 1 | ......._ | 7 | 87 |
| MIMAT0009094 | dya-miR-288 | 7 | ......._ | 1 | 87 |
| MIMAT0009050 | dwi-miR-288 | 7 | ......._ | 1 | 87 |
| MIMAT0008952 | dvi-miR-288 | 7 | ......._ | 1 | 87 |
| MIMAT0008897 | dsi-miR-288 | 7 | ......._ | 1 | 87 |
| MIMAT0008806 | dse-miR-288 | 7 | ......._ | 1 | 87 |
| MIMAT0008753 | dpe-miR-288 | 7 | ......._ | 1 | 87 |
| MIMAT0008675 | dmo-miR-288 | 7 | ......._ | 1 | 87 |
| MIMAT0008600 | dgr-miR-288 | 7 | ......._ | 1 | 87 |
| MIMAT0008551 | der-miR-288 | 7 | ......._ | 1 | 87 |
| MIMAT0008406 | dan-miR-288 | 7 | ......._ | 1 | 87 |
| MIMAT0001252 | dps-miR-288 | 7 | ......._ | 1 | 87 |
| MIMAT0000363 | dme-miR-288-3p | 7 | ......._ | 1 | 87 |
| MIMAT0009823 | nve-miR-2049-3p | 8 | ......t. | 1 | 87 |
| MIMAT0037046 | ssc-miR-9828-3p | 7 | __...... | 2 | 75 |
| MIMAT0036358 | gma-miR9738 | 1 | __...... | 6 | 75 |
| MIMAT0036255 | chi-miR-494 | 1 | __...... | 6 | 75 |
| MIMAT0036148 | chi-miR-335-3p | 8 | _......_ | 3 | 75 |
| MIMAT0035723 | rno-miR-1297 | 7 | ......__ | 2 | 75 |
| MIMAT0035658 | bra-miR9408-3p | 6 | _......_ | 1 | 75 |
| MIMAT0035640 | dvi-miR-9550-5p | 6 | ......__ | 1 | 75 |
| MIMAT0035578 | dvi-miR-957-3p | 1 | __...... | 6 | 75 |
| MIMAT0035359 | gsa-miR-9405-3p | 2 | _......_ | 7 | 75 |
| MIMAT0035028 | efu-miR-494 | 1 | __...... | 6 | 75 |
| MIMAT0034940 | efu-miR-9286 | 6 | _......_ | 1 | 75 |
| MIMAT0034857 | efu-miR-9241 | 3 | __...... | 8 | 75 |
| MIMAT0034247 | gra-miR7504j | 3 | _......_ | 8 | 75 |
| MIMAT0034163 | gra-miR8743a | 2 | _......_ | 7 | 75 |
| MIMAT0034162 | gra-miR8743e | 2 | _......_ | 7 | 75 |
| MIMAT0034161 | gra-miR8743d | 2 | _......_ | 7 | 75 |
| MIMAT0034160 | gra-miR8743c | 2 | _......_ | 7 | 75 |
| MIMAT0034101 | gra-miR7504i | 3 | _......_ | 8 | 75 |
| MIMAT0033893 | atr-miR8604 | 1 | ......__ | 6 | 75 |
| MIMAT0033652 | sma-miR-8466-3p | 7 | __...... | 2 | 75 |
| MIMAT0033561 | sma-miR-8428-3p | 7 | ......__ | 2 | 75 |
| MIMAT0033103 | ppc-miR-8295-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033100 | ppc-miR-8293-3p | 1 | _......_ | 6 | 75 |
| MIMAT0033055 | ppc-miR-8278-5p | 8 | __...... | 3 | 75 |
| MIMAT0030987 | hsa-miR-8060 | 2 | ......__ | 7 | 75 |
| MIMAT0030919 | stu-miR8020 | 8 | _......_ | 3 | 75 |
| MIMAT0031194 | stu-miR1886g-3p | 6 | _......_ | 1 | 75 |
| MIMAT0030172 | bdi-miR7723a-5p | 1 | __...... | 6 | 75 |
| MIMAT0029996 | mtr-miR7698-5p | 7 | _......_ | 2 | 75 |
| MIMAT0029677 | cbn-miR-7634 | 6 | __...... | 1 | 75 |
| MIMAT0028684 | mdo-miR-7338-5p | 7 | __...... | 2 | 75 |
| MIMAT0028480 | mdo-miR-7257-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028327 | mml-miR-7186-3p | 8 | ......__ | 3 | 75 |
| MIMAT0028218 | hsa-miR-7154-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028218 | hsa-miR-7154-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028194 | dev-miR-D19-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028165 | hcmv-miR-US22-5p | 7 | __...... | 2 | 75 |
| MIMAT0025713 | gga-miR-6617-3p | 7 | __...... | 2 | 75 |
| MIMAT0027258 | pgi-miR6137b | 1 | _......_ | 6 | 75 |
| MIMAT0027257 | pgi-miR6137a | 1 | _......_ | 6 | 75 |
| MIMAT0024552 | cca-miR6113 | 3 | __...... | 8 | 75 |
| MIMAT0024284 | ggo-miR-4738 | 1 | __...... | 6 | 75 |
| MIMAT0024160 | ggo-miR-494 | 1 | __...... | 6 | 75 |
| MIMAT0023520 | ath-miR5997 | 1 | __...... | 6 | 75 |
| MIMAT0023186 | gma-miR5781 | 2 | __...... | 7 | 75 |
| MIMAT0022333 | cin-miR-5604-5p | 8 | __...... | 3 | 75 |
| MIMAT0022681 | amg-miR2086 | 3 | ......__ | 8 | 75 |
| MIMAT0022676 | aau-miR2086 | 3 | ......__ | 8 | 75 |
| MIMAT0022000 | aca-miR-5394-5p | 3 | ......__ | 8 | 75 |
| MIMAT0021620 | gma-miR5379 | 1 | _......_ | 6 | 75 |
| MIMAT0021251 | mtr-miR5253 | 2 | _......_ | 7 | 75 |
| MIMAT0020603 | hsa-miR-5096 | 6 | __...... | 1 | 75 |
| MIMAT0021070 | gma-miR5041-5p | 6 | _......_ | 1 | 75 |
| MIMAT0019867 | hsa-miR-4738-3p | 1 | __...... | 6 | 75 |
| MIMAT0019268 | oar-miR-494-3p | 1 | __...... | 6 | 75 |
| MIMAT0018813 | tca-miR-3864-3p | 1 | __...... | 6 | 75 |
| MIMAT0018783 | tca-miR-3858-3p | 1 | __...... | 6 | 75 |
| MIMAT0017910 | aly-miR4222 | 6 | _......_ | 1 | 75 |
| MIMAT0016540 | cin-miR-4024-3p | 6 | _......_ | 1 | 75 |
| MIMAT0016442 | cin-miR-4000i-5p | 1 | __...... | 6 | 75 |
| MIMAT0016440 | cin-miR-4000h-5p | 1 | __...... | 6 | 75 |
| MIMAT0016438 | cin-miR-4000g-5p | 1 | __...... | 6 | 75 |
| MIMAT0016436 | cin-miR-4000f-5p | 1 | __...... | 6 | 75 |
| MIMAT0016434 | cin-miR-4000e-5p | 1 | __...... | 6 | 75 |
| MIMAT0016432 | cin-miR-4000b-5p | 1 | __...... | 6 | 75 |
| MIMAT0016428 | cin-miR-4000d-5p | 1 | __...... | 6 | 75 |
| MIMAT0016426 | cin-miR-4000c-5p | 1 | __...... | 6 | 75 |
| MIMAT0017873 | rno-miR-3583-5p | 3 | ......__ | 8 | 75 |
| MIMAT0016323 | ahy-miR160-3p | 2 | ......__ | 7 | 75 |
| MIMAT0015915 | ppy-miR-494 | 1 | __...... | 6 | 75 |
| MIMAT0014946 | mmu-miR-3074-2-3p | 7 | __...... | 2 | 75 |
| MIMAT0014898 | mmu-miR-3088-3p | 6 | ......__ | 1 | 75 |
| MIMAT0014677 | hma-miR-3009 | 6 | _......_ | 1 | 75 |
| MIMAT0014651 | tgu-miR-29b-2-5p | 8 | __...... | 3 | 75 |
| MIMAT0014369 | cqu-miR-957 | 1 | __...... | 6 | 75 |
| MIMAT0014248 | aae-miR-957 | 1 | __...... | 6 | 75 |
| MIMAT0013164 | eca-miR-494 | 1 | __...... | 6 | 75 |
| MIMAT0012870 | hvt-miR-H16-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012838 | rno-miR-653-5p | 2 | __...... | 7 | 75 |
| MIMAT0013689 | bmo-miR-2791 | 7 | _......_ | 2 | 75 |
| MIMAT0012620 | bmo-miR-2742 | 7 | _......_ | 2 | 75 |
| MIMAT0012498 | dsi-miR-957 | 1 | __...... | 6 | 75 |
| MIMAT0012230 | dps-miR-957-3p | 1 | __...... | 6 | 75 |
| MIMAT0011416 | sme-miR-2160-1-3p | 8 | _......_ | 3 | 75 |
| MIMAT0010106 | aga-miR-957 | 1 | __...... | 6 | 75 |
| MIMAT0010027 | mtr-miR2086-3p | 3 | ......__ | 8 | 75 |
| MIMAT0009905 | cfa-miR-494 | 1 | __...... | 6 | 75 |
| MIMAT0009805 | nve-miR-2041a-3p | 1 | __...... | 6 | 75 |
| MIMAT0009334 | bta-miR-494 | 1 | __...... | 6 | 75 |
| MIMAT0008168 | ptr-miR-494 | 1 | __...... | 6 | 75 |
| MIMAT0007960 | ptr-miR-1206 | 8 | ......__ | 3 | 75 |
| MIMAT0026899 | mml-miR-577-3p | 7 | __...... | 2 | 75 |
| MIMAT0006356 | mml-miR-494-3p | 1 | __...... | 6 | 75 |
| MIMAT0026853 | mml-miR-335-3p | 8 | _......_ | 3 | 75 |
| MIMAT0006037 | odi-miR-1484 | 1 | __...... | 6 | 75 |
| MIMAT0006939 | oan-miR-1422l | 6 | _......_ | 1 | 75 |
| MIMAT0005870 | hsa-miR-1206 | 8 | ......__ | 3 | 75 |
| MIMAT0005205 | ppt-miR1075 | 7 | __...... | 2 | 75 |
| MIMAT0005470 | dme-miR-957-3p | 1 | __...... | 6 | 75 |
| MIMAT0004365 | ppt-miR894 | 7 | __...... | 2 | 75 |
| MIMAT0015241 | cel-miR-797-3p | 7 | _......_ | 2 | 75 |
| MIMAT0003923 | mdv1-miR-M3-5p | 1 | _......_ | 6 | 75 |
| MIMAT0003720 | ebv-miR-BART20-3p | 1 | ......__ | 6 | 75 |
| MIMAT0003193 | rno-miR-494-3p | 1 | __...... | 6 | 75 |
| MIMAT0003182 | mmu-miR-494-3p | 1 | __...... | 6 | 75 |
| MIMAT0026613 | hsa-miR-510-3p | 3 | __...... | 8 | 75 |
| MIMAT0002816 | hsa-miR-494-3p | 1 | __...... | 6 | 75 |
| MIMAT0001569 | mghv-miR-M1-6-3p | 1 | __...... | 6 | 75 |
| MIMAT0005445 | rno-miR-29b-1-5p | 6 | _......_ | 1 | 75 |
| MIMAT0004704 | mmu-miR-335-3p | 8 | _......_ | 3 | 75 |
| MIMAT0004703 | hsa-miR-335-3p | 8 | _......_ | 3 | 75 |
