| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | catgcccc | 8 | ||
| MIMAT0028540 | mdo-miR-7283-5p | 1 | ........ | 8 | 100 |
| MIMAT0028535 | mdo-miR-7280-3p | 1 | ........ | 8 | 100 |
| MIMAT0016377 | gga-miR-3528 | 1 | ........ | 8 | 100 |
| MIMAT0004460 | mdv2-miR-M19-3p | 1 | ........ | 8 | 100 |
| MIMAT0035023 | efu-miR-9318b | 7 | _....... | 1 | 87 |
| MIMAT0034884 | efu-miR-9189d | 8 | ......._ | 2 | 87 |
| MIMAT0033777 | pxy-miR-8532-5p | 8 | _....... | 2 | 87 |
| MIMAT0032978 | ppc-miR-8255-5p | 2 | _....... | 8 | 87 |
| MIMAT0031634 | bbe-miR-2068-3p | 7 | ......._ | 1 | 87 |
| MIMAT0030568 | prd-miR-7892-5p | 7 | ......._ | 1 | 87 |
| MIMAT0028633 | mdo-miR-7316-3p | 7 | ......._ | 1 | 87 |
| MIMAT0027625 | hsa-miR-6862-5p | 8 | ......._ | 2 | 87 |
| MIMAT0016882 | hsa-miR-4253 | 8 | ......._ | 2 | 87 |
| MIMAT0015462 | bmo-miR-3277 | 8 | ......._ | 2 | 87 |
| MIMAT0005417 | cre-miR1163.2 | 8 | ......._ | 2 | 87 |
| MIMAT0003621 | xtr-miR-202-3p | 8 | _....... | 2 | 87 |
| MIMAT0030318 | bdi-miR7782-5p | 8 | ......g. | 1 | 87 |
| MIMAT0016707 | cin-miR-4116-5p | 8 | .t...... | 1 | 87 |
| MIMAT0016163 | ppy-miR-1227 | 1 | ......a. | 8 | 87 |
| MIMAT0037155 | ata-miR9772b-3p | 8 | __...... | 3 | 75 |
| MIMAT0037107 | ata-miR9772a-3p | 8 | __...... | 3 | 75 |
| MIMAT0036915 | oha-miR-365a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036902 | oha-miR-33-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036591 | tch-miR-532-5p | 1 | ......__ | 6 | 75 |
| MIMAT0036553 | tch-miR-486-3p | 7 | __...... | 2 | 75 |
| MIMAT0036548 | tch-miR-365a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036498 | tch-miR-365b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036270 | chi-miR-532-5p | 1 | ......__ | 6 | 75 |
| MIMAT0036177 | chi-miR-365-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036136 | chi-miR-324-3p | 3 | __...... | 8 | 75 |
| MIMAT0035153 | efu-miR-532 | 1 | ......__ | 6 | 75 |
| MIMAT0035099 | efu-miR-365 | 3 | _......_ | 8 | 75 |
| MIMAT0034795 | efu-miR-9207 | 8 | _......_ | 3 | 75 |
| MIMAT0034740 | eca-miR-9163 | 1 | __...... | 6 | 75 |
| MIMAT0034481 | eca-miR-8952 | 1 | __...... | 6 | 75 |
| MIMAT0034284 | cfa-miR-8794 | 1 | __...... | 6 | 75 |
| MIMAT0033708 | pxy-miR-8498 | 8 | __...... | 3 | 75 |
| MIMAT0033705 | pxy-miR-8495-3p | 8 | __...... | 3 | 75 |
| MIMAT0033406 | str-miR-7880u-5p | 1 | __...... | 6 | 75 |
| MIMAT0032949 | ppc-miR-8244-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032623 | ssa-miR-365-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032384 | ssa-miR-150-3p | 8 | _......_ | 3 | 75 |
| MIMAT0032326 | ssa-miR-130b-2-5p | 1 | __...... | 6 | 75 |
| MIMAT0030723 | prd-miR-7934-3p | 3 | _......_ | 8 | 75 |
| MIMAT0030710 | prd-miR-7931-5p | 7 | __...... | 2 | 75 |
| MIMAT0030575 | prd-miR-7894-3p | 1 | ......__ | 6 | 75 |
| MIMAT0030089 | bdi-miR166i-5p | 6 | ......__ | 1 | 75 |
| MIMAT0029915 | mdo-miR-7301-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028529 | mdo-miR-7277-3p | 7 | __...... | 2 | 75 |
| MIMAT0026426 | sbi-miR2118-5p | 6 | ......__ | 1 | 75 |
| MIMAT0026294 | ccr-miR-365 | 3 | _......_ | 8 | 75 |
| MIMAT0027808 | mmu-miR-6954-5p | 7 | __...... | 2 | 75 |
| MIMAT0027806 | mmu-miR-6953-5p | 8 | __...... | 3 | 75 |
| MIMAT0027694 | mmu-miR-6897-5p | 8 | __...... | 3 | 75 |
| MIMAT0027645 | hsa-miR-6872-3p | 3 | ......__ | 8 | 75 |
| MIMAT0027450 | hsa-miR-6775-5p | 8 | __...... | 3 | 75 |
| MIMAT0027387 | hsa-miR-6743-5p | 8 | __...... | 3 | 75 |
| MIMAT0027338 | ptc-miR482b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0025133 | mmu-miR-6386 | 1 | ......__ | 6 | 75 |
| MIMAT0025106 | mmu-miR-6362 | 8 | _......_ | 3 | 75 |
| MIMAT0025071 | rno-miR-3072 | 1 | __...... | 6 | 75 |
| MIMAT0024150 | ggo-miR-365a | 3 | _......_ | 8 | 75 |
| MIMAT0024131 | ggo-miR-532 | 1 | ......__ | 6 | 75 |
| MIMAT0023981 | cgr-miR-532-5p | 1 | ......__ | 6 | 75 |
| MIMAT0023968 | cgr-miR-486-3p | 7 | __...... | 2 | 75 |
| MIMAT0023936 | cgr-miR-365-3p | 3 | _......_ | 8 | 75 |
| MIMAT0023893 | cgr-miR-3072-3p | 1 | __...... | 6 | 75 |
| MIMAT0027103 | hsa-miR-5699-5p | 1 | __...... | 6 | 75 |
| MIMAT0022391 | ath-miR5020c | 7 | ......__ | 2 | 75 |
| MIMAT0021948 | aca-miR-365-3p | 3 | _......_ | 8 | 75 |
| MIMAT0021936 | aca-miR-33-2-3p | 3 | _......_ | 8 | 75 |
| MIMAT0021511 | asu-miR-279a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0021379 | isc-miR-5309 | 3 | _......_ | 8 | 75 |
| MIMAT0021232 | mtr-miR482-5p | 6 | ......__ | 1 | 75 |
| MIMAT0021082 | hsa-miR-5090 | 8 | __...... | 3 | 75 |
| MIMAT0020537 | hme-miR-2788-3p | 3 | _......_ | 8 | 75 |
| MIMAT0020529 | ath-miR5020b | 8 | ......__ | 3 | 75 |
| MIMAT0019909 | hsa-miR-4761-3p | 8 | _......_ | 3 | 75 |
| MIMAT0019904 | hsa-miR-4758-3p | 1 | __...... | 6 | 75 |
| MIMAT0019777 | hsa-miR-4688 | 8 | __...... | 3 | 75 |
| MIMAT0019654 | pma-miR-4620 | 8 | __...... | 3 | 75 |
| MIMAT0019635 | pma-miR-4601 | 1 | __...... | 6 | 75 |
| MIMAT0018361 | hsa-miR-3945 | 7 | _......_ | 2 | 75 |
| MIMAT0018799 | tca-miR-2788-3p | 3 | _......_ | 8 | 75 |
| MIMAT0018510 | ame-miR-2788 | 3 | _......_ | 8 | 75 |
| MIMAT0018043 | vvi-miR3635-5p | 6 | ......__ | 1 | 75 |
| MIMAT0018005 | hsa-miR-3622b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0016854 | hsa-miR-4304 | 8 | ......__ | 3 | 75 |
| MIMAT0016621 | cin-miR-4066-3p | 1 | ......__ | 6 | 75 |
| MIMAT0017832 | rno-miR-3562 | 8 | __...... | 3 | 75 |
| MIMAT0016241 | ppy-miR-1913 | 3 | __...... | 8 | 75 |
| MIMAT0015987 | ppy-miR-532-5p | 1 | ......__ | 6 | 75 |
| MIMAT0015853 | ppy-miR-365 | 3 | _......_ | 8 | 75 |
| MIMAT0015828 | ppy-miR-324-3p | 3 | __...... | 8 | 75 |
| MIMAT0017575 | aly-miR399c-5p | 6 | _......_ | 1 | 75 |
| MIMAT0019217 | hsa-miR-3189-5p | 1 | __...... | 6 | 75 |
| MIMAT0014944 | mmu-miR-486b-3p | 7 | __...... | 2 | 75 |
| MIMAT0014853 | mmu-miR-3072-3p | 1 | __...... | 6 | 75 |
| MIMAT0014582 | tgu-miR-365-3p | 3 | _......_ | 8 | 75 |
| MIMAT0013940 | ssc-miR-532-5p | 1 | ......__ | 6 | 75 |
| MIMAT0013904 | ssc-miR-365-3p | 3 | _......_ | 8 | 75 |
| MIMAT0013235 | eca-miR-532-5p | 1 | ......__ | 6 | 75 |
| MIMAT0013187 | eca-miR-486-3p | 7 | __...... | 2 | 75 |
| MIMAT0013038 | eca-miR-365 | 3 | _......_ | 8 | 75 |
| MIMAT0012829 | rno-miR-511-5p | 1 | ......__ | 6 | 75 |
| MIMAT0012207 | dme-miR-2496-3p | 8 | __...... | 3 | 75 |
| MIMAT0011935 | bta-miR-2385-5p | 8 | __...... | 3 | 75 |
| MIMAT0011503 | crm-miR-786 | 3 | _......_ | 8 | 75 |
| MIMAT0011279 | sme-miR-2177-3p | 3 | _......_ | 8 | 75 |
| MIMAT0009643 | sko-miR-365-3p | 3 | _......_ | 8 | 75 |
| MIMAT0009543 | cte-miR-365 | 3 | _......_ | 8 | 75 |
| MIMAT0008117 | ptr-miR-365 | 3 | _......_ | 8 | 75 |
| MIMAT0008098 | ptr-miR-324 | 3 | __...... | 8 | 75 |
| MIMAT0007888 | hsa-miR-1913 | 3 | __...... | 8 | 75 |
| MIMAT0006758 | cfa-miR-532 | 1 | ......__ | 6 | 75 |
| MIMAT0032036 | cfa-miR-486-3p | 8 | __...... | 3 | 75 |
| MIMAT0006403 | mml-miR-532-5p | 1 | ......__ | 6 | 75 |
| MIMAT0006345 | mml-miR-486-3p | 7 | __...... | 2 | 75 |
| MIMAT0006291 | mml-miR-365-3p | 3 | _......_ | 8 | 75 |
| MIMAT0006267 | mml-miR-324-3p | 3 | __...... | 8 | 75 |
| MIMAT0007636 | gga-miR-1734 | 3 | _......_ | 8 | 75 |
| MIMAT0007480 | gga-miR-1614-5p | 6 | ......__ | 1 | 75 |
| MIMAT0007472 | gga-miR-1606 | 8 | __...... | 3 | 75 |
| MIMAT0007421 | gga-miR-1562-3p | 3 | __...... | 8 | 75 |
| MIMAT0006823 | oan-miR-365-3p | 3 | _......_ | 8 | 75 |
| MIMAT0006818 | oan-miR-33a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0005322 | rno-miR-532-5p | 1 | ......__ | 6 | 75 |
| MIMAT0004341 | bta-miR-365-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004287 | cbr-miR-786 | 3 | _......_ | 8 | 75 |
| MIMAT0004137 | mdo-miR-365-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004221 | cel-miR-786-3p | 3 | _......_ | 8 | 75 |
| MIMAT0003848 | bta-miR-532 | 1 | ......__ | 6 | 75 |
| MIMAT0003637 | xtr-miR-365 | 3 | _......_ | 8 | 75 |
| MIMAT0003457 | mmu-miR-680 | 6 | _......_ | 1 | 75 |
| MIMAT0003361 | gga-miR-365-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017206 | mmu-miR-486a-3p | 7 | __...... | 2 | 75 |
| MIMAT0002968 | tni-miR-365 | 3 | _......_ | 8 | 75 |
| MIMAT0002967 | fru-miR-365 | 3 | _......_ | 8 | 75 |
| MIMAT0002889 | mmu-miR-532-5p | 1 | ......__ | 6 | 75 |
| MIMAT0002888 | hsa-miR-532-5p | 1 | ......__ | 6 | 75 |
| MIMAT0004762 | hsa-miR-486-3p | 7 | __...... | 2 | 75 |
| MIMAT0001875 | dre-miR-365 | 3 | _......_ | 8 | 75 |
| MIMAT0015194 | zma-miR169f-3p | 6 | ......__ | 1 | 75 |
| MIMAT0001549 | rno-miR-365-3p | 3 | _......_ | 8 | 75 |
| MIMAT0001540 | cfa-miR-365 | 3 | _......_ | 8 | 75 |
| MIMAT0031913 | ath-miR399c-5p | 6 | _......_ | 1 | 75 |
| MIMAT0000762 | hsa-miR-324-3p | 3 | __...... | 8 | 75 |
| MIMAT0022834 | hsa-miR-365b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000711 | mmu-miR-365-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000710 | hsa-miR-365a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017030 | mmu-miR-328-5p | 8 | __...... | 3 | 75 |
| MIMAT0017029 | rno-miR-328a-5p | 8 | __...... | 3 | 75 |
| MIMAT0017028 | rno-miR-326-5p | 7 | __...... | 2 | 75 |
| MIMAT0017027 | mmu-miR-326-5p | 7 | __...... | 2 | 75 |
| MIMAT0000326 | cel-miR-270 | 6 | ......__ | 1 | 75 |
