| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cattgacg | 8 | ||
| MIMAT0032956 | ppc-miR-8246-5p | 1 | ......._ | 7 | 87 |
| MIMAT0032517 | ssa-miR-216a-3p | 2 | ......._ | 8 | 87 |
| MIMAT0025150 | mmu-miR-6398 | 7 | ......._ | 1 | 87 |
| MIMAT0023074 | tur-miR-5734-5p | 2 | ......._ | 8 | 87 |
| MIMAT0022991 | gma-miR397b-3p | 2 | _....... | 8 | 87 |
| MIMAT0019103 | tca-miR-13a-5p | 8 | _....... | 2 | 87 |
| MIMAT0015199 | zma-miR171j-5p | 2 | _....... | 8 | 87 |
| MIMAT0032872 | ppc-miR-2a-5p | 8 | .t...... | 1 | 87 |
| MIMAT0021425 | asu-miR-2a-5p | 8 | .t...... | 1 | 87 |
| MIMAT0009213 | bra-miR1885a | 8 | ......t. | 1 | 87 |
| MIMAT0036499 | tch-miR-505-3p | 6 | __...... | 1 | 75 |
| MIMAT0036097 | chi-miR-2483-5p | 6 | __...... | 1 | 75 |
| MIMAT0035878 | bra-miR161-5p | 6 | ......__ | 1 | 75 |
| MIMAT0035705 | mse-miR-929b | 3 | _......_ | 8 | 75 |
| MIMAT0035665 | bra-miR9556-5p | 6 | _......_ | 1 | 75 |
| MIMAT0035620 | dvi-miR-9539-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035572 | dvi-miR-929-5p | 3 | _......_ | 8 | 75 |
| MIMAT0035397 | nve-miR-9436 | 1 | __...... | 6 | 75 |
| MIMAT0035114 | efu-miR-9345 | 7 | ......__ | 2 | 75 |
| MIMAT0034191 | gra-miR8761 | 3 | __...... | 8 | 75 |
| MIMAT0033944 | atr-miR397b | 2 | ......__ | 7 | 75 |
| MIMAT0033563 | sma-miR-8429-3p | 1 | ......__ | 6 | 75 |
| MIMAT0033146 | ppc-miR-8308-5p | 2 | ......__ | 7 | 75 |
| MIMAT0033131 | ppc-miR-8303-2-3p | 6 | ......__ | 1 | 75 |
| MIMAT0033128 | ppc-miR-8303-3p | 6 | ......__ | 1 | 75 |
| MIMAT0032904 | ppc-miR-59-5p | 7 | __...... | 2 | 75 |
| MIMAT0031496 | ppe-miR397 | 2 | ......__ | 7 | 75 |
| MIMAT0030625 | prd-miR-7906-3p | 6 | ......__ | 1 | 75 |
| MIMAT0030156 | bdi-miR7717a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0029984 | mtr-miR397-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028617 | mdo-miR-7309-3p | 6 | ......__ | 1 | 75 |
| MIMAT0026148 | cme-miR397 | 2 | ......__ | 7 | 75 |
| MIMAT0025250 | ptc-miR6447 | 1 | __...... | 6 | 75 |
| MIMAT0025222 | ptc-miR6479 | 7 | ......__ | 2 | 75 |
| MIMAT0025029 | sma-miR-2a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0024992 | hme-miR-929 | 3 | _......_ | 8 | 75 |
| MIMAT0024850 | rno-miR-509-3p | 3 | _......_ | 8 | 75 |
| MIMAT0027251 | pgi-miR6135j | 2 | _......_ | 7 | 75 |
| MIMAT0027246 | pgi-miR6135e.2-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027181 | lus-miR397b | 2 | ......__ | 7 | 75 |
| MIMAT0024348 | mml-miR-514b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0023537 | dpr-miR397 | 2 | ......__ | 7 | 75 |
| MIMAT0023477 | hco-miR-5970 | 1 | ......__ | 6 | 75 |
| MIMAT0023042 | tur-miR-2-5p | 7 | __...... | 2 | 75 |
| MIMAT0022518 | ssl-miR397 | 2 | ......__ | 7 | 75 |
| MIMAT0022198 | cel-miR-5553-3p | 6 | ......__ | 1 | 75 |
| MIMAT0022089 | aca-miR-5461 | 6 | ......__ | 1 | 75 |
| MIMAT0021628 | gma-miR397b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0021627 | gma-miR397a | 2 | ......__ | 7 | 75 |
| MIMAT0020768 | sly-miR5304 | 6 | ......__ | 1 | 75 |
| MIMAT0027059 | bdi-miR160e-3p | 2 | ......__ | 7 | 75 |
| MIMAT0020231 | egr-miR-2c-5p | 7 | __...... | 2 | 75 |
| MIMAT0020432 | tcc-miR397 | 2 | ......__ | 7 | 75 |
| MIMAT0018465 | csi-miR397 | 2 | ......__ | 7 | 75 |
| MIMAT0018417 | nlo-miR-929 | 1 | _......_ | 6 | 75 |
| MIMAT0018414 | ngi-miR-929 | 1 | _......_ | 6 | 75 |
| MIMAT0032113 | ath-miR3932b-5p | 2 | __...... | 7 | 75 |
| MIMAT0018332 | gma-miR1520q | 1 | _......_ | 6 | 75 |
| MIMAT0018738 | tca-miR-3845-5p | 6 | ......__ | 1 | 75 |
| MIMAT0018155 | pab-miR397 | 2 | ......__ | 7 | 75 |
| MIMAT0018051 | vvi-miR3639-5p | 1 | _......_ | 6 | 75 |
| MIMAT0016821 | cin-miR-4201-5p | 3 | ......__ | 8 | 75 |
| MIMAT0016636 | cin-miR-4074-5p | 3 | __...... | 8 | 75 |
| MIMAT0016573 | cin-miR-4042-5p | 6 | ......__ | 1 | 75 |
| MIMAT0016565 | cin-miR-4038-5p | 8 | _......_ | 3 | 75 |
| MIMAT0016460 | cin-miR-4001h-3p | 6 | _......_ | 1 | 75 |
| MIMAT0016245 | sja-miR-2a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0015942 | ppy-miR-514 | 1 | _......_ | 6 | 75 |
| MIMAT0015928 | ppy-miR-505 | 6 | __...... | 1 | 75 |
| MIMAT0015672 | nvi-miR-929 | 1 | _......_ | 6 | 75 |
| MIMAT0015648 | aae-miR-929 | 1 | _......_ | 6 | 75 |
| MIMAT0017702 | aly-miR3435-3p | 2 | _......_ | 7 | 75 |
| MIMAT0017563 | aly-miR397b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0017561 | aly-miR397a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0017441 | aly-miR161-5p.2 | 6 | ......__ | 1 | 75 |
| MIMAT0015088 | hsa-miR-514b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0014741 | api-miR-929 | 3 | _......_ | 8 | 75 |
| MIMAT0014728 | api-miR-2c | 7 | __...... | 2 | 75 |
| MIMAT0014472 | tgu-miR-1803-3p | 1 | _......_ | 6 | 75 |
| MIMAT0014319 | aae-miR-309b-5p | 6 | __...... | 1 | 75 |
| MIMAT0014193 | rco-miR397 | 2 | ......__ | 7 | 75 |
| MIMAT0014019 | zma-miR397b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0014018 | zma-miR397a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0015334 | zma-miR393b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0013234 | eca-miR-514 | 1 | _......_ | 6 | 75 |
| MIMAT0013229 | eca-miR-505 | 6 | __...... | 1 | 75 |
| MIMAT0013729 | bmo-miR-2819 | 6 | ......__ | 1 | 75 |
| MIMAT0012459 | dsi-miR-929-5p | 3 | _......_ | 8 | 75 |
| MIMAT0012267 | dps-miR-929-5p | 3 | _......_ | 8 | 75 |
| MIMAT0012180 | bdi-miR397a | 2 | ......__ | 7 | 75 |
| MIMAT0012075 | bta-miR-2483-5p | 6 | __...... | 1 | 75 |
| MIMAT0011573 | crm-miR-2-5p | 7 | __...... | 2 | 75 |
| MIMAT0011359 | sbi-miR397-5p | 2 | ......__ | 7 | 75 |
| MIMAT0012133 | sme-miR-87c-5p | 6 | _......_ | 1 | 75 |
| MIMAT0010023 | ppt-miR2083-3p | 3 | _......_ | 8 | 75 |
| MIMAT0009877 | cfa-miR-514 | 3 | _......_ | 8 | 75 |
| MIMAT0009158 | bmo-miR-929-5p | 1 | _......_ | 6 | 75 |
| MIMAT0009341 | bta-miR-505 | 6 | __...... | 1 | 75 |
| MIMAT0032076 | dvi-miR-13b-2-5p | 7 | __...... | 2 | 75 |
| MIMAT0008395 | tca-miR-929-5p | 2 | _......_ | 7 | 75 |
| MIMAT0019104 | tca-miR-13b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0008178 | ptr-miR-505 | 6 | __...... | 1 | 75 |
| MIMAT0006561 | vvi-miR397a | 2 | ......__ | 7 | 75 |
| MIMAT0006369 | mml-miR-505-3p | 6 | __...... | 1 | 75 |
| MIMAT0007720 | gga-miR-1803 | 1 | _......_ | 6 | 75 |
| MIMAT0006012 | ptc-miR1450 | 7 | ......__ | 2 | 75 |
| MIMAT0005787 | pbi-miR-514 | 1 | _......_ | 6 | 75 |
| MIMAT0005778 | ptr-miR-514 | 1 | _......_ | 6 | 75 |
| MIMAT0005769 | mml-miR-514a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0005761 | ssy-miR-514 | 1 | _......_ | 6 | 75 |
| MIMAT0005751 | age-miR-514 | 1 | _......_ | 6 | 75 |
| MIMAT0005744 | age-miR-509b | 3 | _......_ | 8 | 75 |
| MIMAT0005743 | age-miR-509a | 3 | _......_ | 8 | 75 |
| MIMAT0005634 | bna-miR161 | 6 | ......__ | 1 | 75 |
| MIMAT0005601 | bna-miR397b | 2 | ......__ | 7 | 75 |
| MIMAT0005600 | bna-miR397a | 2 | ......__ | 7 | 75 |
| MIMAT0005134 | ppt-miR1031b | 6 | ......__ | 1 | 75 |
| MIMAT0005133 | ppt-miR1031a | 6 | ......__ | 1 | 75 |
| MIMAT0020892 | dme-miR-929-5p | 3 | _......_ | 8 | 75 |
| MIMAT0004441 | ame-miR-929 | 1 | _......_ | 6 | 75 |
| MIMAT0004891 | mmu-miR-509-3p | 3 | _......_ | 8 | 75 |
| MIMAT0003513 | mmu-miR-505-3p | 6 | __...... | 1 | 75 |
| MIMAT0002883 | hsa-miR-514a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0002876 | hsa-miR-505-3p | 6 | __...... | 1 | 75 |
| MIMAT0002040 | ptc-miR397c | 6 | ......__ | 1 | 75 |
| MIMAT0002039 | ptc-miR397b | 2 | ......__ | 7 | 75 |
| MIMAT0002038 | ptc-miR397a | 2 | ......__ | 7 | 75 |
| MIMAT0015202 | zma-miR171g-5p | 2 | _......_ | 7 | 75 |
| MIMAT0022868 | osa-miR160f-3p | 2 | ......__ | 7 | 75 |
| MIMAT0000980 | osa-miR397a | 2 | ......__ | 7 | 75 |
| MIMAT0000947 | ath-miR397b | 2 | ......__ | 7 | 75 |
| MIMAT0000946 | ath-miR397a | 2 | ......__ | 7 | 75 |
| MIMAT0006779 | ath-miR161.2 | 6 | ......__ | 1 | 75 |
| MIMAT0020797 | dme-miR-13b-2-5p | 7 | __...... | 2 | 75 |
