| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cattgtct | 8 | ||
| MIMAT0016959 | rlcv-miR-rL1-33-5p | 1 | ........ | 8 | 100 |
| MIMAT0033605 | sma-miR-8447-3p | 7 | ......._ | 1 | 87 |
| MIMAT0033074 | ppc-miR-8304b-3p | 2 | _....... | 8 | 87 |
| MIMAT0028435 | mmu-miR-7233-3p | 2 | _....... | 8 | 87 |
| MIMAT0024803 | hvu-miR5049c | 7 | _....... | 1 | 87 |
| MIMAT0018484 | csi-miR535 | 8 | ......._ | 2 | 87 |
| MIMAT0012373 | dps-miR-2555-3p | 2 | ......._ | 8 | 87 |
| MIMAT0020335 | cel-miR-241-3p | 1 | _....... | 7 | 87 |
| MIMAT0035701 | bra-miR158-5p | 1 | .t...... | 8 | 87 |
| MIMAT0032902 | ppc-miR-8229a-5p | 1 | .t...... | 8 | 87 |
| MIMAT0028107 | ddi-miR-7104 | 8 | ......t. | 1 | 87 |
| MIMAT0027740 | mmu-miR-6920-5p | 8 | ......g. | 1 | 87 |
| MIMAT0023134 | mtr-miR5752b | 1 | ......t. | 8 | 87 |
| MIMAT0023133 | mtr-miR5752a | 1 | ......t. | 8 | 87 |
| MIMAT0017687 | aly-miR837-5p | 1 | ......t. | 8 | 87 |
| MIMAT0017421 | aly-miR158a-5p | 1 | .t...... | 8 | 87 |
| MIMAT0013503 | mtr-miR2676f | 1 | ......t. | 8 | 87 |
| MIMAT0013502 | mtr-miR2676e | 1 | ......t. | 8 | 87 |
| MIMAT0013501 | mtr-miR2676d | 1 | ......t. | 8 | 87 |
| MIMAT0013500 | mtr-miR2676c | 1 | ......t. | 8 | 87 |
| MIMAT0013499 | mtr-miR2676b | 1 | ......t. | 8 | 87 |
| MIMAT0013498 | mtr-miR2676a | 1 | ......t. | 8 | 87 |
| MIMAT0031873 | ath-miR158a-5p | 1 | .t...... | 8 | 87 |
| MIMAT0036841 | oha-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0036551 | tch-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0036067 | chi-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0035672 | bra-miR9559-3p | 6 | ......__ | 1 | 75 |
| MIMAT0035631 | dvi-miR-9545-3p | 1 | __...... | 6 | 75 |
| MIMAT0035551 | dvi-miR-1002-3p | 2 | ......__ | 7 | 75 |
| MIMAT0035548 | dvi-miR-1000-5p | 3 | _......_ | 8 | 75 |
| MIMAT0035466 | sly-miR9475-3p | 8 | ......__ | 3 | 75 |
| MIMAT0035346 | gsa-miR-9400-5p | 7 | __...... | 2 | 75 |
| MIMAT0035264 | gsa-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0035056 | efu-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0034923 | efu-miR-9281 | 7 | ......__ | 2 | 75 |
| MIMAT0034848 | efu-miR-9234b | 1 | __...... | 6 | 75 |
| MIMAT0034843 | efu-miR-9234a | 1 | __...... | 6 | 75 |
| MIMAT0034631 | eca-miR-9086 | 2 | __...... | 7 | 75 |
| MIMAT0034626 | eca-miR-9081 | 8 | __...... | 3 | 75 |
| MIMAT0034611 | eca-miR-9066 | 7 | __...... | 2 | 75 |
| MIMAT0034144 | gra-miR8771b | 3 | _......_ | 8 | 75 |
| MIMAT0034143 | gra-miR8771a | 3 | _......_ | 8 | 75 |
| MIMAT0034060 | gra-miR8687 | 8 | __...... | 3 | 75 |
| MIMAT0034052 | gra-miR8681 | 2 | ......__ | 7 | 75 |
| MIMAT0033504 | sma-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0033401 | str-miR-8377-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033133 | ppc-miR-8304a-3p | 3 | __...... | 8 | 75 |
| MIMAT0032867 | ppc-miR-8218a-3p | 8 | __...... | 3 | 75 |
| MIMAT0032755 | ssa-miR-8162-5p | 1 | __...... | 6 | 75 |
| MIMAT0032530 | ssa-miR-219c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032528 | ssa-miR-219b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032526 | ssa-miR-219a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0031683 | bbe-miR-4863-5p | 6 | __...... | 1 | 75 |
| MIMAT0031650 | bbe-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0030465 | prd-miR-5960-3p | 3 | ......__ | 8 | 75 |
| MIMAT0030424 | hsa-miR-7849-3p | 6 | _......_ | 1 | 75 |
| MIMAT0029997 | mtr-miR7698-3p | 7 | __...... | 2 | 75 |
| MIMAT0032215 | lva-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032168 | pmi-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028945 | oan-miR-7401-3p | 8 | ......__ | 3 | 75 |
| MIMAT0028838 | mdo-miR-7387-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028202 | dre-miR-7145 | 6 | ......__ | 1 | 75 |
| MIMAT0028105 | ddi-miR-7102 | 1 | __...... | 6 | 75 |
| MIMAT0027537 | hsa-miR-6818-3p | 1 | __...... | 6 | 75 |
| MIMAT0027433 | hsa-miR-6766-3p | 3 | _......_ | 8 | 75 |
| MIMAT0025446 | pol-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0025219 | ptc-miR6425e | 1 | __...... | 6 | 75 |
| MIMAT0025214 | ptc-miR6425d-5p | 1 | __...... | 6 | 75 |
| MIMAT0025207 | ptc-miR6425c-5p | 1 | __...... | 6 | 75 |
| MIMAT0025198 | ptc-miR6425b-5p | 1 | __...... | 6 | 75 |
| MIMAT0025190 | ptc-miR6425a-5p | 1 | __...... | 6 | 75 |
| MIMAT0025098 | mmu-miR-6355 | 7 | ......__ | 2 | 75 |
| MIMAT0024933 | hme-miR-1000 | 3 | _......_ | 8 | 75 |
| MIMAT0027308 | ppe-miR6279 | 7 | __...... | 2 | 75 |
| MIMAT0027268 | pgi-miR6143b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0024441 | mse-miR-1000 | 3 | _......_ | 8 | 75 |
| MIMAT0023682 | ame-miR-6058 | 8 | _......_ | 3 | 75 |
| MIMAT0023472 | hco-miR-5965 | 6 | _......_ | 1 | 75 |
| MIMAT0022768 | sko-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0022494 | hsa-miR-5701 | 3 | _......_ | 8 | 75 |
| MIMAT0021884 | aca-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0021261 | mtr-miR5261 | 2 | ......__ | 7 | 75 |
| MIMAT0020271 | emu-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0020246 | egr-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0020122 | xbo-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0020095 | bfl-miR-4863-5p | 6 | __...... | 1 | 75 |
| MIMAT0019945 | hsa-miR-4782-3p | 3 | _......_ | 8 | 75 |
| MIMAT0019708 | hsa-miR-4646-3p | 1 | _......_ | 6 | 75 |
| MIMAT0018426 | nlo-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0018391 | ngi-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0032111 | gma-miR1520f-5p | 1 | _......_ | 6 | 75 |
| MIMAT0018753 | tca-miR-3849-3p | 3 | ......__ | 8 | 75 |
| MIMAT0016920 | hsa-miR-4289 | 2 | ......__ | 7 | 75 |
| MIMAT0016918 | hsa-miR-4288 | 1 | __...... | 6 | 75 |
| MIMAT0017950 | hsa-miR-2355-3p | 1 | _......_ | 6 | 75 |
| MIMAT0016705 | cin-miR-4115-5p | 2 | __...... | 7 | 75 |
| MIMAT0016579 | cin-miR-4045-5p | 8 | ......__ | 3 | 75 |
| MIMAT0016520 | cin-miR-4015-5p | 6 | ......__ | 1 | 75 |
| MIMAT0016267 | sja-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0015804 | ppy-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0015690 | nvi-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0017675 | aly-miR158b-5p | 2 | __...... | 7 | 75 |
| MIMAT0015610 | bmo-miR-3405 | 3 | ......__ | 8 | 75 |
| MIMAT0015488 | bmo-miR-3299 | 2 | ......__ | 7 | 75 |
| MIMAT0014757 | api-miR-3021 | 1 | __...... | 6 | 75 |
| MIMAT0014717 | api-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0014711 | api-miR-1000 | 3 | _......_ | 8 | 75 |
| MIMAT0014568 | tgu-miR-219a | 3 | _......_ | 8 | 75 |
| MIMAT0014403 | cqu-miR-1000 | 3 | _......_ | 8 | 75 |
| MIMAT0014326 | bmo-miR-1000 | 3 | _......_ | 8 | 75 |
| MIMAT0014307 | aae-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0014297 | aae-miR-1000 | 3 | _......_ | 8 | 75 |
| MIMAT0016949 | rlcv-miR-rL1-25-3p | 7 | _......_ | 2 | 75 |
| MIMAT0014054 | osa-miR2923 | 6 | __...... | 1 | 75 |
| MIMAT0013792 | bmo-miR-2856-5p | 1 | __...... | 6 | 75 |
| MIMAT0013232 | eca-miR-508-3p | 3 | _......_ | 8 | 75 |
| MIMAT0013099 | eca-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0012726 | iltv-miR-I3 | 3 | __...... | 8 | 75 |
| MIMAT0012690 | isc-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0012645 | dpu-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0012457 | dsi-miR-1000-5p | 3 | _......_ | 8 | 75 |
| MIMAT0012440 | dsi-miR-1002-3p | 3 | ......__ | 8 | 75 |
| MIMAT0012369 | dps-miR-2554-3p | 2 | _......_ | 7 | 75 |
| MIMAT0012306 | dps-miR-2528 | 3 | __...... | 8 | 75 |
| MIMAT0012265 | dps-miR-1000-5p | 3 | _......_ | 8 | 75 |
| MIMAT0012248 | dps-miR-1002-3p | 2 | ......__ | 7 | 75 |
| MIMAT0011892 | bta-miR-2355-3p | 1 | _......_ | 6 | 75 |
| MIMAT0012159 | sme-miR-96a-3p | 7 | _......_ | 2 | 75 |
| MIMAT0012142 | sme-miR-1992-5p | 1 | __...... | 6 | 75 |
| MIMAT0010119 | ame-miR-1000 | 3 | _......_ | 8 | 75 |
| MIMAT0010109 | aga-miR-1000 | 3 | _......_ | 8 | 75 |
| MIMAT0010097 | tca-miR-1000-5p | 3 | _......_ | 8 | 75 |
| MIMAT0010032 | mtr-miR1510a-5p | 1 | __...... | 6 | 75 |
| MIMAT0010012 | bfl-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0009803 | nve-miR-2040a-3p | 2 | __...... | 7 | 75 |
| MIMAT0009685 | spu-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0009556 | cte-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0009269 | bta-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0009107 | dya-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0009021 | dwi-miR-309 | 8 | __...... | 3 | 75 |
| MIMAT0009012 | dwi-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0008978 | dvi-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0008868 | dsi-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0008824 | dse-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0008719 | dpe-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0008638 | dmo-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0008561 | dgr-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0008552 | der-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0008474 | dan-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0008377 | tca-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0009193 | ptr-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0007829 | osa-miR1875 | 6 | ......__ | 1 | 75 |
| MIMAT0006611 | cfa-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0006245 | mml-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0006137 | csa-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0006113 | cin-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0006084 | odi-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0006033 | odi-miR-1481 | 8 | ......__ | 3 | 75 |
| MIMAT0007331 | gga-miR-1454 | 8 | ......__ | 3 | 75 |
| MIMAT0005971 | osa-miR444c.1 | 3 | __...... | 8 | 75 |
| MIMAT0005969 | osa-miR444b.1 | 3 | __...... | 8 | 75 |
| MIMAT0007102 | oan-miR-1422n-3p | 7 | __...... | 2 | 75 |
| MIMAT0006899 | oan-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0005781 | pbi-miR-508 | 3 | _......_ | 8 | 75 |
| MIMAT0005764 | mml-miR-508-3p | 3 | _......_ | 8 | 75 |
| MIMAT0005742 | age-miR-508 | 3 | _......_ | 8 | 75 |
| MIMAT0005832 | mmu-miR-669g | 3 | ......__ | 8 | 75 |
| MIMAT0005436 | cre-miR1159.2 | 6 | ......__ | 1 | 75 |
| MIMAT0005389 | cre-miR1149.2 | 3 | __...... | 8 | 75 |
| MIMAT0005201 | ppt-miR1072 | 3 | ......__ | 8 | 75 |
| MIMAT0005520 | dme-miR-1000-5p | 3 | _......_ | 8 | 75 |
| MIMAT0020864 | dme-miR-1002-3p | 2 | ......__ | 7 | 75 |
| MIMAT0004394 | cre-miR911 | 6 | ......__ | 1 | 75 |
| MIMAT0004134 | mdo-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0020354 | cel-miR-800-5p | 7 | _......_ | 2 | 75 |
| MIMAT0004006 | sme-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0003632 | xtr-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0002901 | tni-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0002900 | fru-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0002577 | ppy-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0002576 | ggo-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0002575 | mml-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0002069 | ptc-miR475c | 8 | ......__ | 3 | 75 |
| MIMAT0001506 | aga-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0001478 | ame-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0001286 | dre-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0001234 | dps-miR-219 | 3 | _......_ | 8 | 75 |
| MIMAT0001170 | gga-miR-219a | 3 | _......_ | 8 | 75 |
| MIMAT0000889 | rno-miR-219a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000664 | mmu-miR-219a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000335 | dme-miR-219-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000276 | hsa-miR-219a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0015110 | cel-miR-84-3p | 7 | ......__ | 2 | 75 |
