| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccaaatg | 7 | ||
| MIMAT0025242 | ptc-miR6439a | 1 | ....... | 7 | 100 |
| MIMAT0022227 | mtr-miR5561-5p | 7 | ....... | 1 | 100 |
| MIMAT0037018 | ssc-miR-9800-3p | 6 | _...... | 1 | 85 |
| MIMAT0035904 | chi-miR-105b-5p | 2 | _...... | 7 | 85 |
| MIMAT0035903 | chi-miR-105a | 2 | _...... | 7 | 85 |
| MIMAT0035792 | tae-miR5175-5p | 3 | ......_ | 8 | 85 |
| MIMAT0035527 | bdi-miR530b | 8 | _...... | 3 | 85 |
| MIMAT0035526 | bdi-miR530a | 8 | _...... | 3 | 85 |
| MIMAT0034647 | eca-miR-9100 | 7 | _...... | 2 | 85 |
| MIMAT0034181 | gra-miR8753 | 3 | ......_ | 8 | 85 |
| MIMAT0033829 | atr-miR8557 | 1 | ......_ | 6 | 85 |
| MIMAT0033622 | sma-miR-8455-5p | 6 | ......_ | 1 | 85 |
| MIMAT0033519 | sma-miR-8407-3p | 8 | _...... | 3 | 85 |
| MIMAT0033516 | sma-miR-8406-5p | 1 | _...... | 6 | 85 |
| MIMAT0033458 | str-miR-8393-5p | 8 | _...... | 3 | 85 |
| MIMAT0031701 | bbe-miR-4878-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030864 | stu-miR7990a | 3 | _...... | 8 | 85 |
| MIMAT0030782 | prd-miR-7918c-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030780 | prd-miR-7918d-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030608 | prd-miR-7918b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030606 | prd-miR-7918a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030428 | hsa-miR-7853-5p | 2 | _...... | 7 | 85 |
| MIMAT0032247 | rgl-miR7805-5p | 8 | ......_ | 3 | 85 |
| MIMAT0030196 | bdi-miR7731-5p | 3 | ......_ | 8 | 85 |
| MIMAT0029949 | bta-miR-133c | 6 | ......_ | 1 | 85 |
| MIMAT0029299 | mes-miR530b | 8 | _...... | 3 | 85 |
| MIMAT0029298 | mes-miR530a | 8 | _...... | 3 | 85 |
| MIMAT0029014 | oan-miR-7432-5p | 3 | _...... | 8 | 85 |
| MIMAT0028611 | mdo-miR-7307-3p | 1 | _...... | 6 | 85 |
| MIMAT0028319 | mml-miR-7183-3p | 7 | _...... | 2 | 85 |
| MIMAT0026182 | cme-miR530a | 8 | _...... | 3 | 85 |
| MIMAT0026104 | cme-miR530b | 8 | _...... | 3 | 85 |
| MIMAT0025521 | htu-miR530 | 8 | _...... | 3 | 85 |
| MIMAT0025122 | mmu-miR-6377 | 7 | _...... | 2 | 85 |
| MIMAT0027169 | lus-miR530b | 8 | _...... | 3 | 85 |
| MIMAT0027162 | lus-miR530a | 8 | _...... | 3 | 85 |
| MIMAT0024563 | cca-miR6116-3p | 7 | _...... | 2 | 85 |
| MIMAT0023559 | tca-miR-6009-5p | 3 | _...... | 8 | 85 |
| MIMAT0023311 | osa-miR2873c | 1 | _...... | 6 | 85 |
| MIMAT0023209 | gma-miR530e | 8 | _...... | 3 | 85 |
| MIMAT0023199 | gma-miR530d | 8 | _...... | 3 | 85 |
| MIMAT0023197 | gma-miR530c | 8 | _...... | 3 | 85 |
| MIMAT0023156 | mtr-miR530 | 8 | _...... | 3 | 85 |
| MIMAT0023024 | bra-miR5725 | 6 | ......_ | 1 | 85 |
| MIMAT0022463 | gma-miR530b | 8 | _...... | 3 | 85 |
| MIMAT0022272 | hsa-miR-664b-3p | 8 | _...... | 3 | 85 |
| MIMAT0022192 | cel-miR-5550-3p | 1 | _...... | 6 | 85 |
| MIMAT0032125 | gma-miR5374-3p | 3 | _...... | 8 | 85 |
| MIMAT0021003 | gma-miR530a | 8 | _...... | 3 | 85 |
| MIMAT0020461 | bfl-miR-4878 | 6 | ......_ | 1 | 85 |
| MIMAT0020447 | tcc-miR530b | 8 | _...... | 3 | 85 |
| MIMAT0020446 | tcc-miR530a | 8 | _...... | 3 | 85 |
| MIMAT0019910 | hsa-miR-4762-5p | 1 | ......_ | 6 | 85 |
| MIMAT0019787 | hsa-miR-4694-3p | 1 | _...... | 6 | 85 |
| MIMAT0018483 | csi-miR530b | 8 | _...... | 3 | 85 |
| MIMAT0018482 | csi-miR530a | 8 | _...... | 3 | 85 |
| MIMAT0018239 | gma-miR4350 | 2 | _...... | 7 | 85 |
| MIMAT0018835 | tca-miR-3871-3p | 8 | _...... | 3 | 85 |
| MIMAT0018708 | tca-miR-3837-5p | 8 | _...... | 3 | 85 |
| MIMAT0017915 | aly-miR4227 | 7 | _...... | 2 | 85 |
| MIMAT0016828 | cin-miR-4207-3p | 8 | _...... | 3 | 85 |
| MIMAT0016806 | cin-miR-4188-5p | 2 | _...... | 7 | 85 |
| MIMAT0016719 | cin-miR-4125-5p | 8 | _...... | 3 | 85 |
| MIMAT0016336 | ahy-miR3512 | 3 | _...... | 8 | 85 |
| MIMAT0016021 | ppy-miR-579 | 8 | _...... | 3 | 85 |
| MIMAT0017676 | aly-miR158b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017661 | aly-miR2112-5p | 3 | _...... | 8 | 85 |
| MIMAT0017422 | aly-miR158a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0013193 | eca-miR-105 | 2 | _...... | 7 | 85 |
| MIMAT0012895 | eca-miR-1892 | 6 | ......_ | 1 | 85 |
| MIMAT0012604 | bmo-miR-2753 | 2 | _...... | 7 | 85 |
| MIMAT0012593 | aqc-miR530 | 8 | _...... | 3 | 85 |
| MIMAT0011896 | bta-miR-2358 | 1 | ......_ | 6 | 85 |
| MIMAT0011154 | ath-miR2112-5p | 3 | _...... | 8 | 85 |
| MIMAT0010198 | cfa-miR-105b | 2 | _...... | 7 | 85 |
| MIMAT0009879 | cfa-miR-105a | 2 | _...... | 7 | 85 |
| MIMAT0009822 | nve-miR-2049-5p | 1 | _...... | 6 | 85 |
| MIMAT0009576 | lgi-miR-96b | 6 | ......_ | 1 | 85 |
| MIMAT0009217 | bta-miR-105a | 2 | _...... | 7 | 85 |
| MIMAT0009216 | bta-miR-105b | 2 | _...... | 7 | 85 |
| MIMAT0008252 | ptr-miR-579 | 8 | _...... | 3 | 85 |
| MIMAT0007871 | mmu-miR-1892 | 6 | ......_ | 1 | 85 |
| MIMAT0006440 | mml-miR-579 | 8 | _...... | 3 | 85 |
| MIMAT0005998 | ptc-miR530b | 8 | _...... | 3 | 85 |
| MIMAT0005997 | ptc-miR530a | 8 | _...... | 3 | 85 |
| MIMAT0007188 | oan-miR-1392-3p | 6 | _...... | 1 | 85 |
| MIMAT0026744 | hsa-miR-1252-3p | 1 | _...... | 6 | 85 |
| MIMAT0005208 | ppt-miR1077-5p | 3 | _...... | 8 | 85 |
| MIMAT0005502 | dme-miR-985-3p | 1 | _...... | 6 | 85 |
| MIMAT0004322 | ath-miR870-3p | 8 | ......_ | 3 | 85 |
| MIMAT0003244 | hsa-miR-579-3p | 8 | _...... | 3 | 85 |
| MIMAT0006787 | osa-miR530-5p | 8 | _...... | 3 | 85 |
| MIMAT0002457 | mne-miR-105 | 2 | _...... | 7 | 85 |
| MIMAT0002456 | lla-miR-105 | 2 | _...... | 7 | 85 |
| MIMAT0002455 | sla-miR-105 | 2 | _...... | 7 | 85 |
| MIMAT0002454 | mml-miR-105-5p | 2 | _...... | 7 | 85 |
| MIMAT0002453 | ptr-miR-105 | 2 | _...... | 7 | 85 |
| MIMAT0002452 | ppa-miR-105 | 2 | _...... | 7 | 85 |
| MIMAT0002451 | ggo-miR-105 | 2 | _...... | 7 | 85 |
| MIMAT0002450 | ppy-miR-105 | 2 | _...... | 7 | 85 |
| MIMAT0002117 | ssc-miR-105-2 | 2 | _...... | 7 | 85 |
| MIMAT0002116 | ssc-miR-105-1 | 2 | _...... | 7 | 85 |
| MIMAT0001014 | ath-miR158b | 3 | ......_ | 8 | 85 |
| MIMAT0000176 | ath-miR158a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0000102 | hsa-miR-105-5p | 2 | _...... | 7 | 85 |
