| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccacatt | 7 | ||
| MIMAT0036970 | bta-miR-4657 | 7 | ....... | 1 | 100 |
| MIMAT0031544 | ppe-miR6291c-5p | 1 | ....... | 7 | 100 |
| MIMAT0028139 | ddi-miR-7131d | 2 | ....... | 8 | 100 |
| MIMAT0025620 | gga-miR-6555-3p | 7 | ....... | 1 | 100 |
| MIMAT0019724 | hsa-miR-4657 | 7 | ....... | 1 | 100 |
| MIMAT0019026 | hsa-miR-4491 | 7 | ....... | 1 | 100 |
| MIMAT0005999 | ptc-miR1444a | 2 | ....... | 8 | 100 |
| MIMAT0037261 | ath-miR8167f | 8 | ......_ | 3 | 85 |
| MIMAT0037260 | ath-miR8167e | 8 | ......_ | 3 | 85 |
| MIMAT0037259 | ath-miR8167d | 8 | ......_ | 3 | 85 |
| MIMAT0036857 | oha-miR-23b-3p | 3 | _...... | 8 | 85 |
| MIMAT0036855 | oha-miR-23a-3p | 3 | _...... | 8 | 85 |
| MIMAT0036610 | tch-miR-9771n | 7 | _...... | 2 | 85 |
| MIMAT0036520 | tch-miR-23b-3p | 3 | _...... | 8 | 85 |
| MIMAT0036361 | gma-miR9741 | 6 | _...... | 1 | 85 |
| MIMAT0036133 | chi-miR-323a-3p | 1 | _...... | 6 | 85 |
| MIMAT0036089 | chi-miR-23b-3p | 3 | _...... | 8 | 85 |
| MIMAT0036087 | chi-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0035435 | sly-miR9469-5p | 1 | ......_ | 6 | 85 |
| MIMAT0035418 | nve-miR-9457 | 3 | _...... | 8 | 85 |
| MIMAT0035030 | efu-miR-323 | 2 | _...... | 7 | 85 |
| MIMAT0033894 | atr-miR8605 | 1 | _...... | 6 | 85 |
| MIMAT0033191 | ppc-miR-8323-3p | 3 | _...... | 8 | 85 |
| MIMAT0032765 | ath-miR8167c | 8 | ......_ | 3 | 85 |
| MIMAT0032764 | ath-miR8167b | 8 | ......_ | 3 | 85 |
| MIMAT0032763 | ath-miR8167a | 8 | ......_ | 3 | 85 |
| MIMAT0032619 | ssa-miR-33a-3p | 7 | _...... | 2 | 85 |
| MIMAT0032553 | ssa-miR-23b-3p | 3 | _...... | 8 | 85 |
| MIMAT0032549 | ssa-miR-23a-3p | 3 | _...... | 8 | 85 |
| MIMAT0031588 | bbe-miR-135a-3p | 1 | _...... | 6 | 85 |
| MIMAT0030993 | hsa-miR-8066 | 7 | _...... | 2 | 85 |
| MIMAT0030899 | stu-miR8007a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030884 | stu-miR7996c | 6 | ......_ | 1 | 85 |
| MIMAT0030883 | stu-miR7996b | 6 | ......_ | 1 | 85 |
| MIMAT0030882 | stu-miR7996a | 6 | ......_ | 1 | 85 |
| MIMAT0030767 | prd-miR-7948d-3p | 8 | _...... | 3 | 85 |
| MIMAT0030625 | prd-miR-7906-3p | 8 | _...... | 3 | 85 |
| MIMAT0030514 | prd-miR-7879-5p | 6 | _...... | 1 | 85 |
| MIMAT0030360 | hhi-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0030049 | oar-miR-23b | 3 | _...... | 8 | 85 |
| MIMAT0030048 | oar-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0029482 | ipu-miR-23b | 3 | _...... | 8 | 85 |
| MIMAT0029481 | ipu-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0029438 | ipu-miR-181c | 1 | _...... | 6 | 85 |
| MIMAT0029144 | ghr-miR7497 | 8 | ......_ | 3 | 85 |
| MIMAT0029008 | oan-miR-7429-5p | 8 | ......_ | 3 | 85 |
| MIMAT0028617 | mdo-miR-7309-3p | 8 | _...... | 3 | 85 |
| MIMAT0028525 | mdo-miR-7275-3p | 8 | _...... | 3 | 85 |
| MIMAT0026278 | ccr-miR-23b | 3 | _...... | 8 | 85 |
| MIMAT0026277 | ccr-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0026240 | ccr-miR-181c | 1 | _...... | 6 | 85 |
| MIMAT0025232 | ptc-miR6431 | 8 | ......_ | 3 | 85 |
| MIMAT0025068 | rno-miR-6329 | 6 | _...... | 1 | 85 |
| MIMAT0024790 | hbr-miR6171 | 6 | ......_ | 1 | 85 |
| MIMAT0024762 | nta-miR5303b | 8 | _...... | 3 | 85 |
| MIMAT0024761 | nta-miR5303a | 8 | _...... | 3 | 85 |
| MIMAT0024746 | nta-miR6151e | 8 | _...... | 3 | 85 |
| MIMAT0024745 | nta-miR6151d | 8 | _...... | 3 | 85 |
| MIMAT0024744 | nta-miR6151c | 8 | _...... | 3 | 85 |
| MIMAT0024743 | nta-miR6151b | 8 | _...... | 3 | 85 |
| MIMAT0024742 | nta-miR6151a | 8 | _...... | 3 | 85 |
| MIMAT0024244 | ggo-miR-23c | 3 | _...... | 8 | 85 |
| MIMAT0024134 | ggo-miR-323a | 1 | _...... | 6 | 85 |
| MIMAT0024095 | ggo-miR-23b | 3 | _...... | 8 | 85 |
| MIMAT0024048 | ptr-miR-23c | 3 | _...... | 8 | 85 |
| MIMAT0023865 | cgr-miR-23b-3p | 3 | _...... | 8 | 85 |
| MIMAT0023863 | cgr-miR-23a-3p | 3 | _...... | 8 | 85 |
| MIMAT0023174 | gma-miR5772 | 8 | _...... | 3 | 85 |
| MIMAT0023120 | mtr-miR5742 | 1 | ......_ | 6 | 85 |
| MIMAT0022788 | sha-miR-23b | 3 | _...... | 8 | 85 |
| MIMAT0022786 | sha-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0022588 | ola-miR-23b | 3 | _...... | 8 | 85 |
| MIMAT0022583 | ola-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0023022 | bra-miR5723 | 6 | _...... | 1 | 85 |
| MIMAT0022230 | mtr-miR5562-3p | 6 | ......_ | 1 | 85 |
| MIMAT0021898 | aca-miR-23b-3p | 3 | _...... | 8 | 85 |
| MIMAT0021896 | aca-miR-23a-3p | 3 | _...... | 8 | 85 |
| MIMAT0021143 | mtr-miR5210 | 8 | _...... | 3 | 85 |
| MIMAT0022987 | mmu-miR-5129-3p | 6 | _...... | 1 | 85 |
| MIMAT0020640 | mmu-miR-5129-5p | 6 | ......_ | 1 | 85 |
| MIMAT0019404 | pma-miR-23b | 3 | _...... | 8 | 85 |
| MIMAT0019403 | pma-miR-23a-3p | 3 | _...... | 8 | 85 |
| MIMAT0019260 | oar-miR-323a-3p | 1 | _...... | 6 | 85 |
| MIMAT0018835 | tca-miR-3871-3p | 1 | _...... | 6 | 85 |
| MIMAT0018541 | ame-miR-3767 | 3 | _...... | 8 | 85 |
| MIMAT0018525 | ame-miR-3755 | 6 | _...... | 1 | 85 |
| MIMAT0018000 | hsa-miR-23c | 3 | _...... | 8 | 85 |
| MIMAT0016845 | hsa-miR-4296 | 6 | ......_ | 1 | 85 |
| MIMAT0017921 | aly-miR4232 | 2 | _...... | 7 | 85 |
| MIMAT0016765 | cin-miR-4159-3p | 8 | _...... | 3 | 85 |
| MIMAT0015826 | ppy-miR-323-3p | 1 | _...... | 6 | 85 |
| MIMAT0014781 | api-miR-3043 | 1 | _...... | 6 | 85 |
| MIMAT0014668 | hma-miR-3003a-3p | 8 | _...... | 3 | 85 |
| MIMAT0014566 | tgu-miR-23-3p | 3 | _...... | 8 | 85 |
| MIMAT0013893 | ssc-miR-23b | 3 | _...... | 8 | 85 |
| MIMAT0013132 | eca-miR-323-3p | 1 | _...... | 6 | 85 |
| MIMAT0013113 | eca-miR-23b | 3 | _...... | 8 | 85 |
| MIMAT0012986 | eca-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0017358 | rno-miR-511-3p | 6 | _...... | 1 | 85 |
| MIMAT0012307 | dps-miR-2519 | 8 | ......_ | 3 | 85 |
| MIMAT0011447 | cel-miR-2216-5p | 2 | _...... | 7 | 85 |
| MIMAT0010085 | gma-miR2108b | 8 | _...... | 3 | 85 |
| MIMAT0010084 | gma-miR2108a | 8 | _...... | 3 | 85 |
| MIMAT0009284 | bta-miR-323 | 2 | _...... | 7 | 85 |
| MIMAT0008097 | ptr-miR-323 | 1 | _...... | 6 | 85 |
| MIMAT0011145 | xla-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0007859 | aga-miR-1889 | 2 | _...... | 7 | 85 |
| MIMAT0006718 | cfa-miR-323 | 1 | _...... | 6 | 85 |
| MIMAT0006640 | cfa-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0006612 | cfa-miR-23b | 3 | _...... | 8 | 85 |
| MIMAT0026893 | mml-miR-511-3p | 6 | _...... | 1 | 85 |
| MIMAT0006265 | mml-miR-323a-3p | 1 | _...... | 6 | 85 |
| MIMAT0006165 | mml-miR-23b-3p | 3 | _...... | 8 | 85 |
| MIMAT0006001 | ptc-miR1444c | 3 | _...... | 8 | 85 |
| MIMAT0006000 | ptc-miR1444b | 3 | _...... | 8 | 85 |
| MIMAT0007061 | oan-miR-23a-3p | 3 | _...... | 8 | 85 |
| MIMAT0006959 | oan-miR-23b-3p | 3 | _...... | 8 | 85 |
| MIMAT0017281 | mmu-miR-511-3p | 6 | _...... | 1 | 85 |
| MIMAT0004176 | mdo-miR-23b-3p | 3 | _...... | 8 | 85 |
| MIMAT0004173 | mdo-miR-23a-3p | 3 | _...... | 8 | 85 |
| MIMAT0026684 | mdo-miR-383-3p | 1 | ......_ | 6 | 85 |
| MIMAT0012092 | sme-miR-1c-5p | 1 | _...... | 6 | 85 |
| MIMAT0003852 | bta-miR-23b-3p | 3 | _...... | 8 | 85 |
| MIMAT0003827 | bta-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0003673 | xtr-miR-23b | 3 | _...... | 8 | 85 |
| MIMAT0003568 | xtr-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0002954 | tni-miR-23b | 3 | _...... | 8 | 85 |
| MIMAT0002953 | fru-miR-23b | 3 | _...... | 8 | 85 |
| MIMAT0002913 | tni-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0002912 | fru-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0026606 | hsa-miR-511-3p | 6 | _...... | 1 | 85 |
| MIMAT0002756 | mne-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0002754 | sla-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0002752 | mml-miR-23a-3p | 3 | _...... | 8 | 85 |
| MIMAT0002749 | ptr-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0002747 | ppy-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0002745 | lca-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0002743 | ppa-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0002741 | age-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0002738 | ggo-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0026571 | mml-miR-188-3p | 3 | ......_ | 8 | 85 |
| MIMAT0002212 | ppa-miR-23b | 3 | _...... | 8 | 85 |
| MIMAT0002211 | ppy-miR-23b | 3 | _...... | 8 | 85 |
| MIMAT0002210 | ptr-miR-23b | 3 | _...... | 8 | 85 |
| MIMAT0002193 | kshv-miR-K12-3-5p | 2 | _...... | 7 | 85 |
| MIMAT0002139 | ssc-miR-323 | 2 | _...... | 7 | 85 |
| MIMAT0002133 | ssc-miR-23a | 3 | _...... | 8 | 85 |
| MIMAT0001852 | dre-miR-181c-5p | 1 | _...... | 6 | 85 |
| MIMAT0001791 | dre-miR-23b | 3 | _...... | 8 | 85 |
| MIMAT0001790 | dre-miR-23a-3p | 3 | _...... | 8 | 85 |
| MIMAT0001573 | mghv-miR-M1-9 | 2 | _...... | 7 | 85 |
| MIMAT0001334 | osa-miR418 | 7 | _...... | 2 | 85 |
| MIMAT0001326 | ath-miR418 | 7 | _...... | 2 | 85 |
| MIMAT0001186 | gga-miR-23b-3p | 3 | _...... | 8 | 85 |
| MIMAT0000793 | rno-miR-23b-3p | 3 | _...... | 8 | 85 |
| MIMAT0000792 | rno-miR-23a-3p | 3 | _...... | 8 | 85 |
| MIMAT0000755 | hsa-miR-323a-3p | 1 | _...... | 6 | 85 |
| MIMAT0000551 | mmu-miR-323-3p | 1 | _...... | 6 | 85 |
| MIMAT0000550 | rno-miR-323-3p | 1 | _...... | 6 | 85 |
| MIMAT0000532 | mmu-miR-23a-3p | 3 | _...... | 8 | 85 |
| MIMAT0004593 | hsa-miR-130a-5p | 3 | _...... | 8 | 85 |
| MIMAT0000418 | hsa-miR-23b-3p | 3 | _...... | 8 | 85 |
| MIMAT0000125 | mmu-miR-23b-3p | 3 | _...... | 8 | 85 |
| MIMAT0000078 | hsa-miR-23a-3p | 3 | _...... | 8 | 85 |
