VIRmiRNA | Resource for experimental viral miRNA and their targets

Result for your query miRNA sequence
>rrv-miR-rr1-1-3p
ccaccga

RED	=100 % Complementary sequence
.	=Identical residue
blue alphabets	=mismatch
_	=Gap

Acc number	miRNA	Start	Alignment	End	% Identity
Query		1	`ccaccga`	7
MIMAT0036758	oha-miR-181a-1-3p	2	`.......`	8	100
MIMAT0035295	gsa-miR-278-3p	8	`.......`	2	100
MIMAT0035008	efu-miR-181f	2	`.......`	8	100
MIMAT0034172	gra-miR8748	7	`.......`	1	100
MIMAT0031659	bbe-miR-278-5p	7	`.......`	1	100
MIMAT0032219	lva-miR-278-3p	7	`.......`	1	100
MIMAT0032172	pmi-miR-278-3p	7	`.......`	1	100
MIMAT0031027	oan-miR-181a-3-3p	1	`.......`	7	100
MIMAT0024960	hme-miR-278	7	`.......`	1	100
MIMAT0024451	mse-miR-278	7	`.......`	1	100
MIMAT0023031	tur-miR-278-3p	7	`.......`	1	100
MIMAT0020207	dme-miR-4976-3p	7	`.......`	1	100
MIMAT0016930	isc-miR-278	7	`.......`	1	100
MIMAT0014723	api-miR-278	7	`.......`	1	100
MIMAT0014377	cqu-miR-278	7	`.......`	1	100
MIMAT0014238	aae-miR-278-3p	7	`.......`	1	100
MIMAT0017375	ssc-miR-181d-3p	2	`.......`	8	100
MIMAT0013759	bmo-miR-2774c	8	`.......`	2	100
MIMAT0013658	bmo-miR-2774a	8	`.......`	2	100
MIMAT0012653	dpu-miR-278	7	`.......`	1	100
MIMAT0010135	bfl-miR-278	7	`.......`	1	100
MIMAT0009674	spu-miR-278-3p	7	`.......`	1	100
MIMAT0009640	sko-miR-278	7	`.......`	1	100
MIMAT0009592	lgi-miR-278	7	`.......`	1	100
MIMAT0009538	cte-miR-278	7	`.......`	1	100
MIMAT0009164	bmo-miR-278-3p	7	`.......`	1	100
MIMAT0009086	dya-miR-278	7	`.......`	1	100
MIMAT0009029	dwi-miR-278	7	`.......`	1	100
MIMAT0008937	dvi-miR-278-3p	7	`.......`	1	100
MIMAT0008891	dsi-miR-278	7	`.......`	1	100
MIMAT0008781	dse-miR-278	7	`.......`	1	100
MIMAT0008726	dpe-miR-278	7	`.......`	1	100
MIMAT0008676	dmo-miR-278	7	`.......`	1	100
MIMAT0008597	dgr-miR-278	7	`.......`	1	100
MIMAT0008530	der-miR-278	7	`.......`	1	100
MIMAT0008470	dan-miR-278	7	`.......`	1	100
MIMAT0004011	sme-miR-278-3p	7	`.......`	1	100
MIMAT0001511	aga-miR-278	7	`.......`	1	100
MIMAT0001482	ame-miR-278	7	`.......`	1	100
MIMAT0001242	dps-miR-278	7	`.......`	1	100
MIMAT0000339	dme-miR-278-3p	7	`.......`	1	100
MIMAT0020342	cel-miR-259-3p	1	`.......`	7	100
MIMAT0035394	nve-miR-9433	7	`_......`	2	85
MIMAT0034616	eca-miR-9071	3	`......_`	8	85
MIMAT0033895	atr-miR8606	2	`_......`	7	85
MIMAT0033645	sma-miR-8463-5p	7	`_......`	2	85
MIMAT0033515	sma-miR-36b-3p	1	`......_`	6	85
MIMAT0033435	str-miR-8387-3p	2	`_......`	7	85
MIMAT0030998	hsa-miR-8071	6	`......_`	1	85
MIMAT0030890	stu-miR8000	2	`_......`	7	85
MIMAT0030531	prd-miR-36-3p	1	`......_`	6	85
MIMAT0029850	mmu-miR-7672-5p	6	`......_`	1	85
MIMAT0029543	ipu-miR-7549	8	`_......`	3	85
MIMAT0029096	gga-miR-7471-5p	7	`_......`	2	85
MIMAT0031048	mdo-miR-181b-3-3p	2	`_......`	7	85
MIMAT0027848	mmu-miR-6973a-5p	8	`......_`	3	85
MIMAT0025477	hsa-miR-6510-3p	1	`_......`	6	85
MIMAT0025041	sma-miR-36a-3p	1	`......_`	6	85
MIMAT0023051	tur-miR-5730-3p	6	`......_`	1	85
MIMAT0020149	dme-miR-4941-3p	8	`......_`	3	85
MIMAT0018882	tca-miR-3791-5p	6	`......_`	1	85
MIMAT0018690	tca-miR-3830-5p	7	`_......`	2	85
MIMAT0016389	gga-miR-3538	8	`_......`	3	85
MIMAT0016258	sja-miR-36-3p	1	`......_`	6	85
MIMAT0017756	esi-miR3455-3p	6	`......_`	1	85
MIMAT0017706	aly-miR3437-3p	6	`......_`	1	85
MIMAT0015489	bmo-miR-3301	7	`_......`	2	85
MIMAT0013712	bmo-miR-2808a-3p	6	`......_`	1	85
MIMAT0011790	dme-miR-2282-3p	7	`_......`	2	85
MIMAT0009402	mmu-miR-1938	6	`......_`	1	85
MIMAT0007764	osa-miR1846d-5p	3	`......_`	8	85
MIMAT0007662	gga-miR-1755	6	`_......`	1	85
MIMAT0017296	rno-miR-181d-3p	1	`......_`	6	85
MIMAT0005211	ppt-miR1079-5p	1	`_......`	6	85
MIMAT0004407	rrv-miR-rR1-1-3p	3	`......_`	8	85
MIMAT0026608	hsa-miR-181d-3p	1	`......_`	6	85