| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccaccgt | 7 | ||
| MIMAT0035029 | efu-miR-411 | 7 | ....... | 1 | 100 |
| MIMAT0027848 | mmu-miR-6973a-5p | 8 | ....... | 2 | 100 |
| MIMAT0035295 | gsa-miR-278-3p | 8 | ......_ | 3 | 85 |
| MIMAT0034747 | eca-miR-9169 | 8 | _...... | 3 | 85 |
| MIMAT0034616 | eca-miR-9071 | 3 | ......_ | 8 | 85 |
| MIMAT0034614 | eca-miR-9069 | 7 | _...... | 2 | 85 |
| MIMAT0033515 | sma-miR-36b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0033053 | ppc-miR-8277-5p | 7 | _...... | 2 | 85 |
| MIMAT0031647 | bbe-miR-216-3p | 7 | _...... | 2 | 85 |
| MIMAT0030998 | hsa-miR-8071 | 6 | ......_ | 1 | 85 |
| MIMAT0030531 | prd-miR-36-3p | 1 | ......_ | 6 | 85 |
| MIMAT0029850 | mmu-miR-7672-5p | 6 | ......_ | 1 | 85 |
| MIMAT0031027 | oan-miR-181a-3-3p | 1 | ......_ | 6 | 85 |
| MIMAT0025041 | sma-miR-36a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0024334 | mml-miR-1250 | 6 | _...... | 1 | 85 |
| MIMAT0024235 | ggo-miR-1250 | 6 | _...... | 1 | 85 |
| MIMAT0023051 | tur-miR-5730-3p | 6 | ......_ | 1 | 85 |
| MIMAT0021545 | asu-miR-5347-3p | 8 | _...... | 3 | 85 |
| MIMAT0020149 | dme-miR-4941-3p | 8 | ......_ | 3 | 85 |
| MIMAT0019241 | oar-miR-433-5p | 7 | _...... | 2 | 85 |
| MIMAT0018882 | tca-miR-3791-5p | 6 | ......_ | 1 | 85 |
| MIMAT0018827 | tca-miR-3867-3p | 3 | _...... | 8 | 85 |
| MIMAT0018538 | ame-miR-3720 | 8 | _...... | 3 | 85 |
| MIMAT0016340 | ahy-miR3514-3p | 2 | _...... | 7 | 85 |
| MIMAT0016258 | sja-miR-36-3p | 1 | ......_ | 6 | 85 |
| MIMAT0016175 | ppy-miR-1250 | 6 | _...... | 1 | 85 |
| MIMAT0017756 | esi-miR3455-3p | 6 | ......_ | 1 | 85 |
| MIMAT0017706 | aly-miR3437-3p | 6 | ......_ | 1 | 85 |
| MIMAT0016944 | rlcv-miR-rL1-22-3p | 2 | _...... | 7 | 85 |
| MIMAT0013759 | bmo-miR-2774c | 8 | ......_ | 3 | 85 |
| MIMAT0013712 | bmo-miR-2808a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0013658 | bmo-miR-2774a | 8 | ......_ | 3 | 85 |
| MIMAT0013544 | cte-miR-2691-5p | 7 | _...... | 2 | 85 |
| MIMAT0019150 | bfl-miR-216-3p | 7 | _...... | 2 | 85 |
| MIMAT0009402 | mmu-miR-1938 | 6 | ......_ | 1 | 85 |
| MIMAT0007976 | ptr-miR-1250 | 6 | _...... | 1 | 85 |
| MIMAT0007764 | osa-miR1846d-5p | 3 | ......_ | 8 | 85 |
| MIMAT0026875 | mml-miR-433-5p | 7 | _...... | 2 | 85 |
| MIMAT0007634 | gga-miR-1732 | 1 | _...... | 6 | 85 |
| MIMAT0005902 | hsa-miR-1250-5p | 6 | _...... | 1 | 85 |
| MIMAT0017296 | rno-miR-181d-3p | 1 | ......_ | 6 | 85 |
| MIMAT0004407 | rrv-miR-rR1-1-3p | 3 | ......_ | 8 | 85 |
| MIMAT0003442 | rlcv-miR-rL1-12-3p | 7 | _...... | 2 | 85 |
| MIMAT0026608 | hsa-miR-181d-3p | 1 | ......_ | 6 | 85 |
| MIMAT0017192 | rno-miR-433-5p | 7 | _...... | 2 | 85 |
| MIMAT0026554 | hsa-miR-433-5p | 7 | _...... | 2 | 85 |
| MIMAT0001419 | mmu-miR-433-5p | 7 | _...... | 2 | 85 |
| MIMAT0020342 | cel-miR-259-3p | 1 | ......_ | 6 | 85 |
