| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccagaaat | 8 | ||
| MIMAT0032499 | ssa-miR-205b-4-3p | 8 | _....... | 2 | 87 |
| MIMAT0029950 | bta-miR-2285z | 1 | ......._ | 7 | 87 |
| MIMAT0021404 | rmi-miR-5331 | 2 | ......._ | 8 | 87 |
| MIMAT0018834 | tca-miR-3871-5p | 8 | _....... | 2 | 87 |
| MIMAT0016785 | cin-miR-4176-5p | 2 | ......._ | 8 | 87 |
| MIMAT0012319 | dps-miR-2530 | 8 | _....... | 2 | 87 |
| MIMAT0034868 | efu-miR-9251 | 1 | ......c. | 8 | 87 |
| MIMAT0018241 | gma-miR4352a | 8 | .t...... | 1 | 87 |
| MIMAT0018669 | tca-miR-3821-3p | 8 | .t...... | 1 | 87 |
| MIMAT0016404 | cin-miR-96-3p | 8 | ......t. | 1 | 87 |
| MIMAT0012165 | sme-miR-2177-5p | 1 | .a...... | 8 | 87 |
| MIMAT0007247 | oan-miR-1419c-5p | 8 | ......c. | 1 | 87 |
| MIMAT0032022 | ath-miR841a-3p | 8 | .t...... | 1 | 87 |
| MIMAT0035506 | bdi-miR9497 | 6 | _......_ | 1 | 75 |
| MIMAT0035353 | gsa-miR-9402-3p | 8 | __...... | 3 | 75 |
| MIMAT0034819 | efu-miR-9223e | 6 | ......__ | 1 | 75 |
| MIMAT0034689 | eca-miR-9138 | 6 | ......__ | 1 | 75 |
| MIMAT0034559 | eca-miR-9018 | 8 | _......_ | 3 | 75 |
| MIMAT0034369 | cfa-miR-8872 | 6 | ......__ | 1 | 75 |
| MIMAT0034197 | gra-miR8674b | 3 | __...... | 8 | 75 |
| MIMAT0033646 | sma-miR-8463-3p | 8 | __...... | 3 | 75 |
| MIMAT0033550 | sma-miR-8423-5p | 7 | _......_ | 2 | 75 |
| MIMAT0033269 | ppc-miR-8354-3p | 8 | _......_ | 3 | 75 |
| MIMAT0033084 | ppc-miR-8287-3p | 2 | __...... | 7 | 75 |
| MIMAT0032757 | ssa-miR-8163-5p | 6 | _......_ | 1 | 75 |
| MIMAT0031766 | hbv-miR-B7-5p | 6 | ......__ | 1 | 75 |
| MIMAT0031240 | stu-miR8051-3p | 7 | __...... | 2 | 75 |
| MIMAT0030802 | prd-miR-7958-5p | 1 | _......_ | 6 | 75 |
| MIMAT0029152 | ghr-miR7505 | 3 | _......_ | 8 | 75 |
| MIMAT0028921 | mdo-miR-7398q-3p | 8 | __...... | 3 | 75 |
| MIMAT0028913 | mdo-miR-7398m-3p | 8 | __...... | 3 | 75 |
| MIMAT0028911 | mdo-miR-7398l-3p | 8 | __...... | 3 | 75 |
| MIMAT0028903 | mdo-miR-7398r-3p | 8 | __...... | 3 | 75 |
| MIMAT0028743 | mdo-miR-7365-3p | 1 | ......__ | 6 | 75 |
| MIMAT0028628 | mdo-miR-7314-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028570 | mdo-miR-7293-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028508 | mdo-miR-7269-5p | 1 | __...... | 6 | 75 |
| MIMAT0027917 | mmu-miR-7006-3p | 6 | _......_ | 1 | 75 |
| MIMAT0027714 | mmu-miR-6907-5p | 6 | ......__ | 1 | 75 |
| MIMAT0025593 | gga-miR-6545-5p | 3 | _......_ | 8 | 75 |
| MIMAT0025591 | gga-miR-6544-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027295 | ppe-miR6270 | 6 | ......__ | 1 | 75 |
| MIMAT0024376 | ppy-miR-4782 | 6 | ......__ | 1 | 75 |
| MIMAT0023324 | hco-miR-5889 | 6 | _......_ | 1 | 75 |
| MIMAT0022500 | hsa-miR-5706 | 6 | ......__ | 1 | 75 |
| MIMAT0022468 | hsa-miR-5680 | 2 | __...... | 7 | 75 |
| MIMAT0022374 | mmu-miR-5623-3p | 7 | ......__ | 2 | 75 |
| MIMAT0021911 | aca-miR-29a-1-5p | 8 | __...... | 3 | 75 |
| MIMAT0021556 | asu-miR-5350c-5p | 8 | _......_ | 3 | 75 |
| MIMAT0020153 | dme-miR-4944-5p | 6 | _......_ | 1 | 75 |
| MIMAT0020509 | dme-miR-4916-3p | 8 | __...... | 3 | 75 |
| MIMAT0020063 | sko-miR-4843 | 2 | _......_ | 7 | 75 |
| MIMAT0020046 | sko-miR-4832 | 2 | _......_ | 7 | 75 |
| MIMAT0019944 | hsa-miR-4782-5p | 6 | ......__ | 1 | 75 |
| MIMAT0022978 | hsa-miR-4743-3p | 6 | _......_ | 1 | 75 |
| MIMAT0019296 | oar-miR-539-5p | 1 | __...... | 6 | 75 |
| MIMAT0016832 | cin-miR-4211-5p | 2 | _......_ | 7 | 75 |
| MIMAT0016220 | ppy-miR-1299 | 6 | ......__ | 1 | 75 |
| MIMAT0016167 | ppy-miR-1237 | 8 | _......_ | 3 | 75 |
| MIMAT0015989 | ppy-miR-539 | 3 | __...... | 8 | 75 |
| MIMAT0017742 | ath-miR841b-3p | 8 | __...... | 3 | 75 |
| MIMAT0014489 | tgu-miR-2979-5p | 2 | ......__ | 7 | 75 |
| MIMAT0014138 | ath-miR2934-5p | 8 | _......_ | 3 | 75 |
| MIMAT0013167 | eca-miR-539 | 3 | __...... | 8 | 75 |
| MIMAT0012322 | dps-miR-2533 | 6 | ......__ | 1 | 75 |
| MIMAT0012040 | bta-miR-1434-3p | 3 | __...... | 8 | 75 |
| MIMAT0011954 | bta-miR-2399-5p | 7 | _......_ | 2 | 75 |
| MIMAT0011674 | ppc-miR-2248 | 3 | ......__ | 8 | 75 |
| MIMAT0011224 | sme-miR-2148-5p | 1 | __...... | 6 | 75 |
| MIMAT0009909 | cfa-miR-539 | 3 | __...... | 8 | 75 |
| MIMAT0022952 | mmu-miR-1966-3p | 6 | _......_ | 1 | 75 |
| MIMAT0009342 | bta-miR-539 | 3 | __...... | 8 | 75 |
| MIMAT0008214 | ptr-miR-539 | 3 | __...... | 8 | 75 |
| MIMAT0008018 | ptr-miR-1299 | 6 | ......__ | 1 | 75 |
| MIMAT0006405 | mml-miR-539 | 3 | __...... | 8 | 75 |
| MIMAT0007708 | gga-miR-1794 | 2 | ......__ | 7 | 75 |
| MIMAT0007207 | oan-miR-1401-5p | 6 | _......_ | 1 | 75 |
| MIMAT0006829 | oan-miR-1336 | 8 | _......_ | 3 | 75 |
| MIMAT0005887 | hsa-miR-1299 | 6 | ......__ | 1 | 75 |
| MIMAT0005558 | mcmv-miR-m108-1-3p | 6 | _......_ | 1 | 75 |
| MIMAT0015223 | bmo-miR-7-3p | 2 | __...... | 7 | 75 |
| MIMAT0003176 | rno-miR-539-5p | 3 | __...... | 8 | 75 |
| MIMAT0003169 | mmu-miR-539-5p | 3 | __...... | 8 | 75 |
| MIMAT0003163 | hsa-miR-539-5p | 3 | __...... | 8 | 75 |
| MIMAT0001564 | mghv-miR-M1-1-3p | 2 | __...... | 7 | 75 |
