Result for your query miRNA sequence
>hiv1-miR-h1
ccagggag

RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numbermiRNAStartAlignmentEnd% Identity
Query1ccagggag8
MIMAT0027408hsa-miR-6754-5p1........8100
MIMAT0019489pma-miR-181b-3p1........8100
MIMAT0004480hiv1-miR-H11........8100
MIMAT0035225dme-miR-9381-5p2......._887
MIMAT0034791efu-miR-92048......._287
MIMAT0033546sma-miR-8421-5p7_.......187
MIMAT0030450bta-miR-78651_.......787
MIMAT0029067gga-miR-7456-3p1_.......787
MIMAT0028471mdo-miR-7252-3p8_.......287
MIMAT0028420mmu-miR-7226-5p2......._887
MIMAT0028124hsa-miR-7113-3p8_.......287
MIMAT0028123hsa-miR-7113-5p2......._887
MIMAT0027936mmu-miR-7016-5p1_.......787
MIMAT0027836mmu-miR-6967-5p1_.......787
MIMAT0027420hsa-miR-6760-5p1_.......787
MIMAT0025720gga-miR-6624-3p2......._887
MIMAT0025125mmu-miR-63797......._187
MIMAT0022019aca-miR-5405-3p2_.......887
MIMAT0019899hsa-miR-4756-5p1_.......787
MIMAT0018959hsa-miR-44412_.......887
MIMAT0016900hsa-miR-42702_.......887
MIMAT0016861hsa-miR-43087......._187
MIMAT0007481gga-miR-1614-3p1_.......787
MIMAT0006953oan-miR-13562......._887
MIMAT0006839oan-miR-1338-5p1_.......787
MIMAT0005952hsa-miR-13211_.......787
MIMAT0029011oan-miR-7430-3p1.a......887
MIMAT0027496hsa-miR-6798-5p1......g.887
MIMAT0037188ata-miR408-5p1_......_675
MIMAT0037150ata-miR395b-5p8_......_375
MIMAT0037023ssc-miR-9805-3p2......__775
MIMAT0037014ssc-miR-9796-3p1_......_675
MIMAT0036674oha-miR-125b-5p6_......_175
MIMAT0036672oha-miR-125a-5p6_......_175
MIMAT0036593tch-miR-125b-5p6_......_175
MIMAT0036474tch-miR-125a-5p6_......_175
MIMAT0036146chi-miR-331-3p7......__275
MIMAT0035925chi-miR-125b-5p6_......_175
MIMAT0035923chi-miR-125a-5p6_......_175
MIMAT0035754bfv-miR-BF1-3p6_......_175
MIMAT0035148efu-miR-3318......__375
MIMAT0035113efu-miR-93446_......_175
MIMAT0034919efu-miR-125b6_......_175
MIMAT0034917efu-miR-9279a6......__175
MIMAT0034863efu-miR-9246c8......__375
MIMAT0034585eca-miR-76671_......_675
MIMAT0034566eca-miR-90241_......_675
MIMAT0034463eca-miR-89347......__275
MIMAT0034362cfa-miR-88657__......275
MIMAT0034325cfa-miR-88322......__775
MIMAT0034154gra-miR8771c2__......775
MIMAT0034062gra-miR7494b3__......875
MIMAT0033750pxy-miR-9296__......175
MIMAT0033510sma-miR-125c-5p6_......_175
MIMAT0033338str-miR-8368-5p6_......_175
MIMAT0033336str-lin-4-5p6_......_175
MIMAT0033111ppc-miR-8297-5p8_......_375
MIMAT0032927ppc-miR-8236-3p6_......_175
MIMAT0032879ppc-miR-8222-3p6_......_175
MIMAT0032650ssa-miR-459-3p1_......_675
MIMAT0032489ssa-miR-204-3p2_......_775
MIMAT0032307ssa-miR-125b-5p6_......_175
MIMAT0032304ssa-miR-125a-5p6_......_175
MIMAT0031710bbe-miR-4899-5p8__......375
MIMAT0031685bbe-miR-4864-5p1__......675
MIMAT0031579bbe-miR-125a-5p6_......_175
MIMAT0031337stu-miR408a-5p2_......_775
MIMAT0030456prd-lin-4-5p6_......_175
MIMAT0032243rgl-miR78021__......675
MIMAT0032239rgl-miR77981__......675
MIMAT0030067bdi-miR5174e-5p.28__......375
MIMAT0032205lva-miR-125-5p6_......_175
MIMAT0032158pmi-miR-125-5p6_......_175
MIMAT0029917cbr-miR-22316_......_175
MIMAT0029735cbn-miR-2376_......_175
MIMAT0029734cbn-lin-46_......_175
MIMAT0029399ipu-miR-125c6_......_175
MIMAT0029398ipu-miR-125b6_......_175
MIMAT0029397ipu-miR-125a6_......_175
MIMAT0029327lja-miR4081_......_675
MIMAT0031150aja-miR-3318......__375
MIMAT0029296mes-miR477g8__......375
MIMAT0029295mes-miR477f8__......375
MIMAT0029294mes-miR477e8__......375
MIMAT0029293mes-miR477d8__......375
MIMAT0029292mes-miR477c8__......375
MIMAT0029291mes-miR477b8__......375
MIMAT0029290mes-miR477a8__......375
MIMAT0028724mdo-miR-7356-5p7_......_275
MIMAT0028527mdo-miR-7276-3p3......__875
MIMAT0028438mmu-miR-7235-5p3__......875
MIMAT0026305ccr-miR-459-3p1_......_675
MIMAT0026205ccr-miR-125c6_......_175
MIMAT0026204ccr-miR-125b6_......_175
MIMAT0026102cme-miR477b8__......375
MIMAT0026089cme-miR477a8__......375
MIMAT0026033mdm-miR408d2_......_775
MIMAT0026032mdm-miR408c2_......_775
MIMAT0026031mdm-miR408b2_......_775
MIMAT0028110hsa-miR-7106-3p8__......375
MIMAT0027998mmu-miR-7047-5p3__......875
MIMAT0027968mmu-miR-7032-5p2......__775
MIMAT0027882mmu-miR-6990-5p2......__775
MIMAT0027855mmu-miR-6976-3p8__......375
MIMAT0027854mmu-miR-6976-5p1_......_675
MIMAT0027830mmu-miR-6965-5p3__......875
MIMAT0027758mmu-miR-6929-5p1__......675
MIMAT0027724mmu-miR-6912-5p3_......_875
MIMAT0027666hsa-miR-6883-5p1__......675
MIMAT0027656hsa-miR-6878-5p1__......675
MIMAT0027635hsa-miR-6867-3p8__......375
MIMAT0027604hsa-miR-6852-5p6......__175
MIMAT0027576hsa-miR-6837-5p2......__775
MIMAT0027544hsa-miR-6822-5p1_......_675
MIMAT0027482hsa-miR-6791-5p7......__275
MIMAT0027428hsa-miR-6764-5p3......__875
MIMAT0027406hsa-miR-6753-5p3......__875
MIMAT0027405hsa-miR-6752-3p6_......_175
MIMAT0027400hsa-miR-6750-5p1_......_675
MIMAT0025836gga-miR-6599-5p2__......775
MIMAT0025812gga-miR-6702-5p3......__875
MIMAT0025741gga-miR-6643-5p1......__675
MIMAT0025718gga-miR-6621-5p2_......_775
MIMAT0025696gga-miR-6602-5p2_......_775
MIMAT0025372ssc-miR-3396_......_175
MIMAT0025275ptc-miR477d-5p8__......375
MIMAT0025144mmu-miR-63946_......_175
MIMAT0025111mmu-miR-63676_......_175
MIMAT0025097mmu-miR-63548......__375
MIMAT0025073rno-miR-63323_......_875
MIMAT0025020hme-miR-6312-3p8......__375
MIMAT0024626mml-miR-61333__......875
MIMAT0024623mml-miR-61303__......875
MIMAT0024622mml-miR-61293__......875
MIMAT0024619mml-miR-61273__......875
MIMAT0024617hsa-miR-61333__......875
MIMAT0024614hsa-miR-61303__......875
MIMAT0024613hsa-miR-61293__......875
MIMAT0024610hsa-miR-61273__......875
MIMAT0024607ptr-miR-61333__......875
MIMAT0024604ptr-miR-61303__......875
MIMAT0024603ptr-miR-61293__......875
MIMAT0024600ptr-miR-61273__......875
MIMAT0024571bta-miR-149-3p2__......775
MIMAT0024498mse-miR-929a6__......175
MIMAT0024163ggo-miR-5048......__375
MIMAT0024133ggo-miR-125a6_......_175
MIMAT0024128ggo-miR-3318......__375
MIMAT0024109ggo-miR-45103__......875
MIMAT0024027ptr-miR-45103__......875
MIMAT0023919cgr-miR-3396_......_175
MIMAT0023917cgr-miR-331-3p8......__375
MIMAT0023781cgr-miR-149-3p2__......775
MIMAT0023743cgr-miR-125b-5p6_......_175
MIMAT0023741cgr-miR-125a-5p6_......_175
MIMAT0023691ame-miR-60661__......675
MIMAT0023508hco-miR-2653__......875
MIMAT0023503hco-miR-59886_......_175
MIMAT0023435hco-miR-59403__......875
MIMAT0023345hco-lin-46_......_175
MIMAT0022802sha-miR-125a6_......_175
MIMAT0022638ola-miR-125a-5p6_......_175
MIMAT0022627ola-miR-125b6_......_175
MIMAT0022615ola-miR-125c6_......_175
MIMAT0022283hsa-miR-5584-5p1_......_675
MIMAT0022237mtr-miR408-5p2_......_775
MIMAT0021729aca-miR-125b6_......_175
MIMAT0021727aca-miR-125a-5p6_......_175
MIMAT0021445asu-miR-36d-5p1_......_675
MIMAT0021415asu-lin-4-5p6_......_175
MIMAT0027096bdi-miR395n-5p8_......_375
MIMAT0027095bdi-miR395l-5p8_......_375
MIMAT0027094bdi-miR395k-5p8_......_375
MIMAT0027092bdi-miR395h-5p8_......_375
MIMAT0020712bdi-miR319a3__......875
MIMAT0027074bdi-miR395c-5p8_......_375
MIMAT0027066bdi-miR159a-5p8__......375
MIMAT0020550bdi-miR408-5p1_......_675
MIMAT0020268emu-miR-1256_......_175
MIMAT0020243egr-miR-1256_......_175
MIMAT0020491bfl-miR-48998__......375
MIMAT0020097bfl-miR-4864-5p1__......675
MIMAT0019868hsa-miR-47392__......775
MIMAT0019772hsa-miR-4685-3p7__......275
MIMAT0019771hsa-miR-4685-5p2......__775
MIMAT0019446pma-miR-125-5p6_......_175
MIMAT0019047hsa-miR-45103__......875
MIMAT0018996hsa-miR-44697__......275
MIMAT0018931hsa-miR-4419a3__......875
MIMAT0018476csi-miR477b8__......375
MIMAT0018475csi-miR477a8__......375
MIMAT0018421nlo-miR-1256_......_175
MIMAT0017974ssc-miR-4842......__775
MIMAT0020366ssc-miR-4334-3p6_......_175
MIMAT0017966ssc-miR-4334-5p6......__175
MIMAT0016919hsa-miR-42927......__275
MIMAT0016917hsa-miR-42877__......275
MIMAT0016870hsa-miR-43196_......_175
MIMAT0016676cin-miR-4095-5p8_......_375
MIMAT0016405cin-miR-125-5p6_......_175
MIMAT0017898rno-miR-3594-5p2......__775
MIMAT0017880rno-miR-3586-5p6_......_175
MIMAT0016347ahy-miR3520-3p2__......775
MIMAT0016334ahy-miR3511-5p2......__775
MIMAT0016243ppy-miR-19153......__875
MIMAT0016168ppy-miR-12386__......175
MIMAT0016130ppy-miR-9201__......675
MIMAT0015842ppy-miR-339-5p6_......_175
MIMAT0015836ppy-miR-331-3p8......__375
MIMAT0015748ppy-miR-125a-5p6_......_175
MIMAT0015679nvi-miR-1256_......_175
MIMAT0015646mmu-miR-34746......__175
MIMAT0017635aly-miR846-5p3_......_875
MIMAT0017587aly-miR408-5p1_......_675
MIMAT0015036hsa-miR-3162-5p3__......875
MIMAT0014971oar-miR-125b6_......_175
MIMAT0014937mmu-miR-3103-5p3__......875
MIMAT0014505tgu-miR-125-5p6_......_175
MIMAT0014355cqu-miR-125-5p6_......_175
MIMAT0014258aae-miR-125-5p6_......_175
MIMAT0014095bma-lin-46_......_175
MIMAT0015360zma-miR408b-5p1_......_675
MIMAT0013939ssc-miR-339-5p6_......_175
MIMAT0013930ssc-miR-331-3p8......__375
MIMAT0013897ssc-miR-125a6_......_175
MIMAT0013852bta-miR-28948......__375
MIMAT0013188eca-miR-3318......__375
MIMAT0013052eca-miR-6707_......_275
MIMAT0013008eca-miR-125a-5p6_......_175
MIMAT0012981eca-miR-125b-5p6_......_175
MIMAT0012816ptr-miR-6706_......_175
MIMAT0012792mml-miR-670-5p6_......_175
MIMAT0012587aqc-miR477c8__......375
MIMAT0012586aqc-miR477b8__......375
MIMAT0012585aqc-miR477a8__......375
MIMAT0012584aqc-miR477e8__......375
MIMAT0012582aqc-miR477g8__......375
MIMAT0012460dsi-miR-929-3p6__......175
MIMAT0012268dps-miR-929-3p6__......175
MIMAT0012038bta-miR-339b6_......_175
MIMAT0011994bta-miR-2425-5p1......__675
MIMAT0011691ppc-miR-2240c3......__875
MIMAT0011689ppc-miR-2240b3......__875
MIMAT0011684ppc-miR-2236b6_......_175
MIMAT0011648ppc-lin-46_......_175
MIMAT0011632crm-miR-2231-3p6_......_175
MIMAT0011599crm-lin-4-5p6_......_175
MIMAT0011553crm-miR-237-5p6_......_175
MIMAT0011479cbr-miR-237-5p6_......_175
MIMAT0010184sma-miR-125b6_......_175
MIMAT0010183sma-miR-125a-5p6_......_175
MIMAT0010179sja-miR-125b6_......_175
MIMAT0010178sja-miR-125a6_......_175
MIMAT0010101aga-miR-9296__......175
MIMAT0009895cfa-miR-3318......__375
MIMAT0009667spu-miR-125-5p6_......_175
MIMAT0009626sko-miR-125a6_......_175
MIMAT0009594lgi-miR-281-5p2__......775
MIMAT0009525cte-miR-1256_......_175
MIMAT0009483bfl-miR-125a-5p6_......_175
MIMAT0015289bmo-miR-929-3p6__......175
MIMAT0009439mmu-miR-1966-5p2__......775
MIMAT0009408mmu-miR-1943-5p2__......775
MIMAT0009405mmu-miR-1941-5p1__......675
MIMAT0009364bta-miR-6706_......_175
MIMAT0009293bta-miR-339a6_......_175
MIMAT0009096dya-miR-1256_......_175
MIMAT0009032dwi-miR-1256_......_175
MIMAT0008917dvi-miR-125-5p6_......_175
MIMAT0008846dsi-miR-1256_......_175
MIMAT0008826dse-miR-1256_......_175
MIMAT0008725dpe-miR-1256_......_175
MIMAT0008669dmo-miR-1256_......_175
MIMAT0008610dgr-miR-1256_......_175
MIMAT0008526der-miR-1256_......_175
MIMAT0008473dan-miR-1256_......_175
MIMAT0019133tca-miR-929-3p6__......175
MIMAT0008371tca-miR-125-5p6_......_175
MIMAT0008103ptr-miR-3318......__375
MIMAT0007892hsa-miR-1915-3p3......__875
MIMAT0011134cfa-miR-3396_......_175
MIMAT0006670cfa-miR-125b6_......_175
MIMAT0006609cfa-miR-125a6_......_175
MIMAT0006575vvi-miR477a8__......375
MIMAT0006279mml-miR-339-5p6_......_175
MIMAT0006273mml-miR-331-3p8......__375
MIMAT0026827mml-miR-149-3p2__......775
MIMAT0006181mml-miR-125a-5p6_......_175
MIMAT0007531gga-miR-16526_......_175
MIMAT0007465gga-miR-15993__......875
MIMAT0006146mdo-miR-1546-5p2_......_775
MIMAT0006015pta-miR482d8__......375
MIMAT0007182oan-miR-802-3p1__......675
MIMAT0007065oan-miR-1375-3p1__......675
MIMAT0007048oan-miR-125-5p6_......_175
MIMAT0006842oan-miR-204-3p1_......_675
MIMAT0005375ppt-miR477b8__......375
MIMAT0005053ppt-miR477h7__......275
MIMAT0005052ppt-miR477e8__......375
MIMAT0005051ppt-miR477d8__......375
MIMAT0005511dme-miR-929-3p6__......175
MIMAT0022939hsa-miR-939-3p6......__175
MIMAT0004360ppt-miR477a-5p8__......375
MIMAT0004359ppt-miR477c8__......375
MIMAT0017277mmu-miR-504-3p1__......675
MIMAT0004868mmu-miR-3437__......275
MIMAT0004339bta-miR-331-3p8......__375
MIMAT0004103mdo-miR-125b-5p6_......_175
MIMAT0004224cel-miR-789-3p6_......_175
MIMAT0003998sme-miR-125b-5p6_......_175
MIMAT0003996sme-miR-125a-5p6_......_175
MIMAT0003956sme-lin-4-5p6_......_175
MIMAT0003684xtr-miR-125a6_......_175
MIMAT0003586xtr-miR-125b6_......_175
MIMAT0003539bta-miR-125b6_......_175
MIMAT0003538bta-miR-125a6_......_175
MIMAT0003900ppt-miR1211-5p1__......675
MIMAT0003736mmu-miR-670-5p7_......_275
MIMAT0010357hsa-miR-670-5p7_......_275
MIMAT0003082tni-miR-125a6_......_175
MIMAT0003081fru-miR-125a6_......_175
MIMAT0003062tni-miR-125b6_......_175
MIMAT0003061fru-miR-125b6_......_175
MIMAT0002280lca-miR-125b6_......_175
MIMAT0002228mne-miR-125b6_......_175
MIMAT0002227lla-miR-125b6_......_175
MIMAT0002226sla-miR-125b6_......_175
MIMAT0002225mml-miR-125b-5p6_......_175
MIMAT0002224ptr-miR-125b6_......_175
MIMAT0002223ppy-miR-125b6_......_175
MIMAT0002222ppa-miR-125b6_......_175
MIMAT0002221age-miR-125b6_......_175
MIMAT0002220ggo-miR-125b6_......_175
MIMAT0015216kshv-miR-K12-8-5p7__......275
MIMAT0002120ssc-miR-125b6_......_175
MIMAT0002075ptc-miR477b8__......375
MIMAT0002074ptc-miR477a-5p8__......375
MIMAT0003408dre-miR-459-3p1_......_675
MIMAT0001822dre-miR-125c-5p6_......_175
MIMAT0001821dre-miR-125b-5p6_......_175
MIMAT0001820dre-miR-125a6_......_175
MIMAT0015165zma-miR395c-5p8_......_375
MIMAT0001500aga-miR-1256_......_175
MIMAT0001230dps-miR-1256_......_175
MIMAT0001105gga-miR-125b-5p6_......_175
MIMAT0022884osa-miR408-5p1_......_675
MIMAT0031915ath-miR408-5p2_......_775
MIMAT0000830rno-miR-125b-5p6_......_175
MIMAT0000829rno-miR-125a-5p6_......_175
MIMAT0000764hsa-miR-339-5p6_......_175
MIMAT0000760hsa-miR-331-3p8......__375
MIMAT0000609mmu-miR-351-5p6_......_175
MIMAT0000608rno-miR-351-5p6_......_175
MIMAT0000591rno-miR-3437__......275
MIMAT0000584mmu-miR-339-5p6_......_175
MIMAT0000583rno-miR-339-5p6_......_175
MIMAT0000571mmu-miR-331-3p8......__375
MIMAT0000570rno-miR-331-3p8......__375
MIMAT0000464cbr-lin-46_......_175
MIMAT0004609hsa-miR-149-3p1__......675
MIMAT0000443hsa-miR-125a-5p6_......_175
MIMAT0000423hsa-miR-125b-5p6_......_175
MIMAT0000397dme-miR-125-5p6_......_175
MIMAT0000321cel-miR-2653__......875
MIMAT0000292cel-miR-237-5p6_......_175
MIMAT0022694hsa-miR-211-3p2_......_775
MIMAT0016990mmu-miR-149-3p2__......775
MIMAT0000136mmu-miR-125b-5p6_......_175
MIMAT0000135mmu-miR-125a-5p6_......_175
MIMAT0000002cel-lin-4-5p6_......_175