| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccaggtgg | 8 | ||
| MIMAT0025017 | hme-miR-6310-3p | 1 | ........ | 8 | 100 |
| MIMAT0035675 | bra-miR9560b-5p | 2 | _....... | 8 | 87 |
| MIMAT0035673 | bra-miR9560a-5p | 2 | _....... | 8 | 87 |
| MIMAT0027431 | hsa-miR-6765-3p | 8 | ......._ | 2 | 87 |
| MIMAT0022434 | ath-miR5660 | 1 | _....... | 7 | 87 |
| MIMAT0020238 | egr-miR-87-5p | 7 | _....... | 1 | 87 |
| MIMAT0020196 | dme-miR-4969-3p | 7 | _....... | 1 | 87 |
| MIMAT0017076 | mmu-miR-363-5p | 1 | _....... | 7 | 87 |
| MIMAT0015092 | cel-lin-4-3p | 8 | ......._ | 2 | 87 |
| MIMAT0036937 | oha-miR-490-3p | 8 | ......t. | 1 | 87 |
| MIMAT0036250 | chi-miR-490 | 8 | ......t. | 1 | 87 |
| MIMAT0031575 | bbe-miR-10b-3p | 1 | .a...... | 8 | 87 |
| MIMAT0027504 | hsa-miR-6802-5p | 1 | .t...... | 8 | 87 |
| MIMAT0025376 | ssc-miR-490 | 8 | ......t. | 1 | 87 |
| MIMAT0024205 | ggo-miR-490 | 8 | ......t. | 1 | 87 |
| MIMAT0021977 | aca-miR-490-3p | 8 | ......t. | 1 | 87 |
| MIMAT0022960 | ssc-miR-490-3p | 8 | ......t. | 1 | 87 |
| MIMAT0015910 | ppy-miR-490-3p | 8 | ......t. | 1 | 87 |
| MIMAT0014548 | tgu-miR-490-3p | 8 | ......t. | 1 | 87 |
| MIMAT0012945 | eca-miR-490-3p | 8 | ......t. | 1 | 87 |
| MIMAT0012823 | rno-miR-490-3p | 8 | ......t. | 1 | 87 |
| MIMAT0013615 | bmo-miR-2755-5p | 1 | .a...... | 8 | 87 |
| MIMAT0009875 | cfa-miR-490 | 8 | ......t. | 1 | 87 |
| MIMAT0009331 | bta-miR-490 | 8 | ......t. | 1 | 87 |
| MIMAT0008165 | ptr-miR-490 | 8 | ......t. | 1 | 87 |
| MIMAT0006351 | mml-miR-490-3p | 8 | ......t. | 1 | 87 |
| MIMAT0006039 | odi-miR-1486 | 1 | .t...... | 8 | 87 |
| MIMAT0006811 | oan-miR-490-3p | 8 | ......t. | 1 | 87 |
| MIMAT0003780 | mmu-miR-490-3p | 8 | ......t. | 1 | 87 |
| MIMAT0003366 | gga-miR-490-3p | 8 | ......t. | 1 | 87 |
| MIMAT0002806 | hsa-miR-490-3p | 8 | ......t. | 1 | 87 |
| MIMAT0037235 | ata-miR394-3p | 1 | __...... | 6 | 75 |
| MIMAT0037056 | ssc-miR-9838-5p | 2 | _......_ | 7 | 75 |
| MIMAT0036846 | oha-miR-221-5p | 6 | ......__ | 1 | 75 |
| MIMAT0036685 | oha-miR-1306-5p | 8 | __...... | 3 | 75 |
| MIMAT0036673 | oha-miR-125a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0036496 | tch-miR-1306-5p | 6 | __...... | 1 | 75 |
| MIMAT0036267 | chi-miR-502b-3p | 8 | __...... | 3 | 75 |
| MIMAT0036068 | chi-miR-221-5p | 6 | ......__ | 1 | 75 |
| MIMAT0035939 | chi-miR-1306-5p | 6 | __...... | 1 | 75 |
| MIMAT0035924 | chi-miR-125a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0035785 | tae-miR9670-3p | 1 | __...... | 6 | 75 |
| MIMAT0035447 | sly-miR9471a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0035438 | sly-miR394-3p | 1 | __...... | 6 | 75 |
| MIMAT0035415 | nve-miR-9454 | 3 | ......__ | 8 | 75 |
| MIMAT0035196 | efu-miR-221 | 6 | ......__ | 1 | 75 |
| MIMAT0035191 | efu-miR-9366 | 3 | _......_ | 8 | 75 |
| MIMAT0035091 | efu-miR-9186o | 2 | __...... | 7 | 75 |
| MIMAT0034959 | efu-miR-9186q | 2 | __...... | 7 | 75 |
| MIMAT0034558 | eca-miR-9017 | 1 | _......_ | 6 | 75 |
| MIMAT0033787 | pxy-miR-306 | 1 | ......__ | 6 | 75 |
| MIMAT0032934 | ppc-miR-8239-5p | 6 | _......_ | 1 | 75 |
| MIMAT0032770 | ath-miR8171 | 3 | __...... | 8 | 75 |
| MIMAT0032310 | ssa-miR-125b-3-3p | 2 | _......_ | 7 | 75 |
| MIMAT0032309 | ssa-miR-125b-2-3p | 1 | _......_ | 6 | 75 |
| MIMAT0032308 | ssa-miR-125b-1-3p | 2 | _......_ | 7 | 75 |
| MIMAT0031853 | cpa-miR8155 | 8 | ......__ | 3 | 75 |
| MIMAT0031522 | ppe-miR1511-3p | 6 | ......__ | 1 | 75 |
| MIMAT0031000 | hsa-miR-8073 | 6 | ......__ | 1 | 75 |
| MIMAT0030818 | prd-miR-76-5p | 1 | ......__ | 6 | 75 |
| MIMAT0030518 | prd-miR-7880a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0030426 | hsa-miR-7851-3p | 7 | ......__ | 2 | 75 |
| MIMAT0029837 | mmu-miR-7665-3p | 3 | ......__ | 8 | 75 |
| MIMAT0029823 | mmu-miR-7658-3p | 7 | __...... | 2 | 75 |
| MIMAT0028975 | oan-miR-7413-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028777 | mdo-miR-7372-3p | 7 | __...... | 2 | 75 |
| MIMAT0028511 | mdo-miR-7270-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028455 | mdo-miR-7244-3p | 7 | _......_ | 2 | 75 |
| MIMAT0028240 | mml-miR-1306-5p | 6 | __...... | 1 | 75 |
| MIMAT0028210 | dre-miR-1306 | 6 | __...... | 1 | 75 |
| MIMAT0028184 | dev-miR-D12-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027978 | mmu-miR-7037-5p | 2 | __...... | 7 | 75 |
| MIMAT0027811 | mmu-miR-6955-3p | 7 | _......_ | 2 | 75 |
| MIMAT0027759 | mmu-miR-6929-3p | 1 | _......_ | 6 | 75 |
| MIMAT0027630 | hsa-miR-6865-5p | 2 | __...... | 7 | 75 |
| MIMAT0027530 | hsa-miR-6815-5p | 2 | __...... | 7 | 75 |
| MIMAT0027509 | hsa-miR-6804-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027438 | hsa-miR-6769a-5p | 1 | __...... | 6 | 75 |
| MIMAT0027386 | hsa-miR-6742-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025776 | gga-miR-6674-3p | 1 | _......_ | 6 | 75 |
| MIMAT0025751 | gga-miR-6651-5p | 2 | ......__ | 7 | 75 |
| MIMAT0025448 | pol-miR-221-5p | 6 | ......__ | 1 | 75 |
| MIMAT0024851 | rno-miR-1306-5p | 6 | __...... | 1 | 75 |
| MIMAT0024618 | hsa-miR-6134 | 3 | __...... | 8 | 75 |
| MIMAT0024609 | ptr-miR-6134 | 3 | __...... | 8 | 75 |
| MIMAT0024388 | ppy-miR-3661 | 8 | ......__ | 3 | 75 |
| MIMAT0024375 | ppy-miR-3934 | 2 | _......_ | 7 | 75 |
| MIMAT0024070 | ptr-miR-3165 | 1 | __...... | 6 | 75 |
| MIMAT0023858 | cgr-miR-221-5p | 6 | ......__ | 1 | 75 |
| MIMAT0023752 | cgr-miR-1306-5p | 6 | __...... | 1 | 75 |
| MIMAT0023742 | cgr-miR-125a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0023586 | nta-miR6019b | 3 | _......_ | 8 | 75 |
| MIMAT0023583 | nta-miR6019a | 3 | _......_ | 8 | 75 |
| MIMAT0022639 | ola-miR-125a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0022590 | ola-miR-1306 | 6 | __...... | 1 | 75 |
| MIMAT0022122 | osa-miR5489 | 1 | _......_ | 6 | 75 |
| MIMAT0021889 | aca-miR-221-5p | 7 | ......__ | 2 | 75 |
| MIMAT0021728 | aca-miR-125a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0020650 | rgl-miR5139 | 8 | ......__ | 3 | 75 |
| MIMAT0020051 | sko-miR-4835-5p | 1 | __...... | 6 | 75 |
| MIMAT0020022 | sko-miR-4821 | 7 | _......_ | 2 | 75 |
| MIMAT0019846 | hsa-miR-4726-3p | 3 | ......__ | 8 | 75 |
| MIMAT0019282 | oar-miR-654-5p | 3 | __...... | 8 | 75 |
| MIMAT0019259 | oar-miR-323a-5p | 1 | __...... | 6 | 75 |
| MIMAT0018349 | hsa-miR-3934-5p | 2 | _......_ | 7 | 75 |
| MIMAT0018336 | gma-miR394b-3p | 1 | __...... | 6 | 75 |
| MIMAT0018540 | ame-miR-3766 | 2 | __...... | 7 | 75 |
| MIMAT0018119 | hsa-miR-3690 | 6 | ......__ | 1 | 75 |
| MIMAT0018087 | hsa-miR-3665 | 3 | _......_ | 8 | 75 |
| MIMAT0018082 | hsa-miR-3661 | 8 | ......__ | 3 | 75 |
| MIMAT0018006 | hsa-miR-3622b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0018004 | hsa-miR-3622a-3p | 7 | _......_ | 2 | 75 |
| MIMAT0016771 | cin-miR-4163-3p | 8 | __...... | 3 | 75 |
| MIMAT0016274 | sja-miR-3479-5p | 1 | __...... | 6 | 75 |
| MIMAT0016159 | ppy-miR-1224-3p | 8 | __...... | 3 | 75 |
| MIMAT0016070 | ppy-miR-631 | 8 | ......__ | 3 | 75 |
| MIMAT0016061 | ppy-miR-619 | 7 | ......__ | 2 | 75 |
| MIMAT0015825 | ppy-miR-323-5p | 1 | __...... | 6 | 75 |
| MIMAT0015749 | ppy-miR-125a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0017546 | aly-miR394b-3p | 1 | __...... | 6 | 75 |
| MIMAT0017544 | aly-miR394a-3p | 1 | __...... | 6 | 75 |
| MIMAT0015039 | hsa-miR-3165 | 1 | __...... | 6 | 75 |
| MIMAT0014915 | mmu-miR-3097-5p | 3 | _......_ | 8 | 75 |
| MIMAT0014902 | mmu-miR-3090-3p | 3 | ......__ | 8 | 75 |
| MIMAT0026976 | tgu-miR-221-5p | 6 | ......__ | 1 | 75 |
| MIMAT0014482 | tgu-miR-2972 | 2 | _......_ | 7 | 75 |
| MIMAT0013937 | ssc-miR-1306-5p | 6 | __...... | 1 | 75 |
| MIMAT0013155 | eca-miR-412 | 8 | _......_ | 3 | 75 |
| MIMAT0013131 | eca-miR-323-5p | 1 | __...... | 6 | 75 |
| MIMAT0013009 | eca-miR-125a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0012812 | ptr-miR-631 | 8 | ......__ | 3 | 75 |
| MIMAT0012402 | dps-miR-2567b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0012396 | dps-miR-2567a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0012330 | dps-miR-2538-5p | 2 | __...... | 7 | 75 |
| MIMAT0011686 | ppc-miR-2260 | 3 | __...... | 8 | 75 |
| MIMAT0011571 | crm-miR-246-5p | 6 | ......__ | 1 | 75 |
| MIMAT0009974 | bta-miR-1306 | 6 | __...... | 1 | 75 |
| MIMAT0009922 | cfa-miR-631 | 7 | ......__ | 2 | 75 |
| MIMAT0009821 | nve-miR-2048-3p | 7 | _......_ | 2 | 75 |
| MIMAT0009455 | mmu-miR-1983 | 8 | _......_ | 3 | 75 |
| MIMAT0017350 | mmu-miR-1968-3p | 7 | __...... | 2 | 75 |
| MIMAT0019136 | mmu-miR-1306-5p | 8 | __...... | 3 | 75 |
| MIMAT0017342 | mmu-miR-1943-3p | 1 | _......_ | 6 | 75 |
| MIMAT0009357 | bta-miR-631 | 8 | ......__ | 3 | 75 |
| MIMAT0008281 | ptr-miR-619 | 7 | ......__ | 2 | 75 |
| MIMAT0008233 | ptr-miR-552 | 3 | _......_ | 8 | 75 |
| MIMAT0007984 | ptr-miR-125a | 2 | _......_ | 7 | 75 |
| MIMAT0022949 | ssc-miR-221-5p | 6 | ......__ | 1 | 75 |
| MIMAT0006661 | cfa-miR-1306 | 6 | __...... | 1 | 75 |
| MIMAT0006476 | mml-miR-631 | 8 | ......__ | 3 | 75 |
| MIMAT0006264 | mml-miR-323a-5p | 1 | __...... | 6 | 75 |
| MIMAT0006182 | mml-miR-125a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0007509 | gga-miR-1636 | 3 | _......_ | 8 | 75 |
| MIMAT0007461 | gga-miR-1596-3p | 3 | __...... | 8 | 75 |
| MIMAT0007411 | gga-miR-1554 | 2 | _......_ | 7 | 75 |
| MIMAT0026770 | mdo-miR-1546-3p | 6 | __...... | 1 | 75 |
| MIMAT0026763 | gga-miR-1306-5p | 7 | __...... | 2 | 75 |
| MIMAT0007297 | oan-miR-1421ag-5p | 1 | __...... | 6 | 75 |
| MIMAT0022950 | osa-miR1432-3p | 1 | _......_ | 6 | 75 |
| MIMAT0007134 | oan-miR-221-5p | 6 | ......__ | 1 | 75 |
| MIMAT0007088 | oan-miR-1421u-5p | 1 | __...... | 6 | 75 |
| MIMAT0007084 | oan-miR-1421s-5p | 1 | __...... | 6 | 75 |
| MIMAT0007080 | oan-miR-1421q-5p | 1 | __...... | 6 | 75 |
| MIMAT0007074 | oan-miR-1421n-5p | 1 | __...... | 6 | 75 |
| MIMAT0022726 | hsa-miR-1306-5p | 6 | __...... | 1 | 75 |
| MIMAT0005571 | mml-miR-1224-3p | 8 | __...... | 3 | 75 |
| MIMAT0005569 | ptr-miR-1224-3p | 8 | __...... | 3 | 75 |
| MIMAT0005407 | cre-miR1157-5p | 6 | ......__ | 1 | 75 |
| MIMAT0004961 | ppt-miR900-5p | 3 | ......__ | 8 | 75 |
| MIMAT0026701 | mdo-miR-221-5p | 6 | ......__ | 1 | 75 |
| MIMAT0017231 | mmu-miR-1224-3p | 8 | __...... | 3 | 75 |
| MIMAT0010367 | hsa-miR-764 | 2 | _......_ | 7 | 75 |
| MIMAT0005459 | hsa-miR-1224-3p | 8 | __...... | 3 | 75 |
| MIMAT0004817 | ebv-miR-BART10-5p | 7 | __...... | 2 | 75 |
| MIMAT0003300 | hsa-miR-631 | 8 | ......__ | 3 | 75 |
| MIMAT0003288 | hsa-miR-619-3p | 7 | ......__ | 2 | 75 |
| MIMAT0003215 | hsa-miR-552-3p | 3 | _......_ | 8 | 75 |
| MIMAT0026590 | mml-miR-221-5p | 6 | ......__ | 1 | 75 |
| MIMAT0015163 | zma-miR394b-3p | 1 | __...... | 6 | 75 |
| MIMAT0015162 | zma-miR394a-3p | 1 | __...... | 6 | 75 |
| MIMAT0001570 | mghv-miR-M1-7-5p | 3 | __...... | 8 | 75 |
| MIMAT0031926 | dre-miR-221-5p | 6 | ......__ | 1 | 75 |
| MIMAT0026494 | gga-miR-221-5p | 7 | ......__ | 2 | 75 |
| MIMAT0001094 | mmu-miR-412-3p | 8 | _......_ | 3 | 75 |
| MIMAT0031907 | ath-miR394b-3p | 1 | __...... | 6 | 75 |
| MIMAT0017163 | rno-miR-221-5p | 6 | ......__ | 1 | 75 |
| MIMAT0004729 | rno-miR-125a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0017108 | rno-miR-92a-2-5p | 1 | __...... | 6 | 75 |
| MIMAT0004696 | hsa-miR-323a-5p | 1 | __...... | 6 | 75 |
| MIMAT0015120 | cel-miR-358-5p | 6 | ......__ | 1 | 75 |
| MIMAT0017060 | mmu-miR-221-5p | 6 | ......__ | 1 | 75 |
| MIMAT0004638 | mmu-miR-323-5p | 1 | __...... | 6 | 75 |
| MIMAT0004637 | rno-miR-323-5p | 1 | __...... | 6 | 75 |
| MIMAT0004635 | mmu-miR-92a-2-5p | 1 | __...... | 6 | 75 |
| MIMAT0004602 | hsa-miR-125a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0004568 | hsa-miR-221-5p | 6 | ......__ | 1 | 75 |
| MIMAT0004528 | mmu-miR-125a-3p | 2 | _......_ | 7 | 75 |
