| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccagtccc | 8 | ||
| MIMAT0035125 | efu-miR-9350 | 1 | ........ | 8 | 100 |
| MIMAT0019194 | rlcv-miR-rL1-29-5p | 1 | ........ | 8 | 100 |
| MIMAT0035477 | sly-miR9479-5p | 2 | ......._ | 8 | 87 |
| MIMAT0034610 | eca-miR-9065 | 8 | _....... | 2 | 87 |
| MIMAT0033319 | str-miR-7880e-5p | 8 | ......._ | 2 | 87 |
| MIMAT0030979 | hsa-miR-8052 | 8 | _....... | 2 | 87 |
| MIMAT0029841 | mmu-miR-7667-3p | 8 | _....... | 2 | 87 |
| MIMAT0024384 | ppy-miR-4515 | 8 | ......._ | 2 | 87 |
| MIMAT0019052 | hsa-miR-4515 | 8 | ......._ | 2 | 87 |
| MIMAT0016239 | ppy-miR-1910 | 1 | ......._ | 7 | 87 |
| MIMAT0015084 | hsa-miR-3199 | 8 | _....... | 2 | 87 |
| MIMAT0007884 | hsa-miR-1910-5p | 1 | ......._ | 7 | 87 |
| MIMAT0025463 | hsa-miR-6503-3p | 8 | .t...... | 1 | 87 |
| MIMAT0018987 | hsa-miR-4463 | 8 | ......t. | 1 | 87 |
| MIMAT0007273 | oan-miR-873-3p | 8 | ......t. | 1 | 87 |
| MIMAT0036932 | oha-miR-455-3p | 2 | _......_ | 7 | 75 |
| MIMAT0036916 | oha-miR-365a-2-5p | 7 | __...... | 2 | 75 |
| MIMAT0036914 | oha-miR-365a-1-5p | 7 | __...... | 2 | 75 |
| MIMAT0036713 | oha-miR-1388-5p | 7 | _......_ | 2 | 75 |
| MIMAT0036608 | tch-miR-455-3p | 2 | _......_ | 7 | 75 |
| MIMAT0036398 | gma-miR319q | 7 | _......_ | 2 | 75 |
| MIMAT0036377 | gma-miR319o | 7 | _......_ | 2 | 75 |
| MIMAT0036242 | chi-miR-455-3p | 2 | _......_ | 7 | 75 |
| MIMAT0035958 | chi-miR-1388-5p | 7 | _......_ | 2 | 75 |
| MIMAT0035839 | bra-miR319-3p | 8 | _......_ | 3 | 75 |
| MIMAT0035595 | dvi-miR-980-5p | 1 | __...... | 6 | 75 |
| MIMAT0035432 | sly-miR319c-3p | 8 | _......_ | 3 | 75 |
| MIMAT0035430 | sly-miR319b | 8 | _......_ | 3 | 75 |
| MIMAT0035015 | efu-miR-1388 | 7 | _......_ | 2 | 75 |
| MIMAT0034769 | efu-miR-9189e | 7 | ......__ | 2 | 75 |
| MIMAT0034675 | eca-miR-9124 | 7 | _......_ | 2 | 75 |
| MIMAT0034566 | eca-miR-9024 | 8 | __...... | 3 | 75 |
| MIMAT0034496 | eca-miR-1388 | 7 | _......_ | 2 | 75 |
| MIMAT0034452 | eca-miR-8924 | 7 | __...... | 2 | 75 |
| MIMAT0034440 | eca-miR-8912 | 3 | ......__ | 8 | 75 |
| MIMAT0034427 | cfa-miR-2114 | 2 | __...... | 7 | 75 |
| MIMAT0034210 | gra-miR8772 | 8 | _......_ | 3 | 75 |
| MIMAT0034185 | gra-miR8756 | 7 | _......_ | 2 | 75 |
| MIMAT0033982 | gra-miR3476 | 8 | _......_ | 3 | 75 |
| MIMAT0033930 | atr-miR319c | 8 | _......_ | 3 | 75 |
| MIMAT0033928 | atr-miR319a | 8 | _......_ | 3 | 75 |
| MIMAT0033555 | sma-miR-8425-3p | 8 | ......__ | 3 | 75 |
| MIMAT0032644 | ssa-miR-455-3p | 2 | _......_ | 7 | 75 |
| MIMAT0032622 | ssa-miR-365-5p | 7 | __...... | 2 | 75 |
| MIMAT0032335 | ssa-miR-1338-5p | 7 | _......_ | 2 | 75 |
| MIMAT0031849 | cpa-miR8152 | 8 | _......_ | 3 | 75 |
| MIMAT0031845 | cpa-miR8148 | 7 | ......__ | 2 | 75 |
| MIMAT0031278 | stu-miR319a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0031276 | stu-miR319b | 8 | _......_ | 3 | 75 |
| MIMAT0030952 | stu-miR319-3p | 8 | _......_ | 3 | 75 |
| MIMAT0030537 | prd-miR-7940c-3p | 7 | ......__ | 2 | 75 |
| MIMAT0030445 | bta-miR-7863 | 8 | _......_ | 3 | 75 |
| MIMAT0029983 | mtr-miR319d-3p | 8 | _......_ | 3 | 75 |
| MIMAT0029981 | mtr-miR319c-3p | 8 | _......_ | 3 | 75 |
| MIMAT0029507 | ipu-miR-365 | 7 | __...... | 2 | 75 |
| MIMAT0029259 | mes-miR319g | 8 | _......_ | 3 | 75 |
| MIMAT0029258 | mes-miR319f | 8 | _......_ | 3 | 75 |
| MIMAT0029257 | mes-miR319e | 8 | _......_ | 3 | 75 |
| MIMAT0029256 | mes-miR319d | 8 | _......_ | 3 | 75 |
| MIMAT0029255 | mes-miR319c | 8 | _......_ | 3 | 75 |
| MIMAT0029254 | mes-miR319b | 8 | _......_ | 3 | 75 |
| MIMAT0029253 | mes-miR319a | 8 | _......_ | 3 | 75 |
| MIMAT0031067 | oan-miR-365-2-5p | 8 | __...... | 3 | 75 |
| MIMAT0028873 | mdo-miR-7388b-3p | 3 | __...... | 8 | 75 |
| MIMAT0028665 | mdo-miR-873-3p | 7 | ......__ | 2 | 75 |
| MIMAT0028397 | mmu-miR-7214-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028371 | mml-miR-7203-3p | 8 | __...... | 3 | 75 |
| MIMAT0028274 | mml-miR-7170-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028181 | dev-miR-D9-3p | 1 | _......_ | 6 | 75 |
| MIMAT0028152 | ssc-miR-7138-3p | 8 | _......_ | 3 | 75 |
| MIMAT0026403 | sbi-miR6219-3p | 1 | __...... | 6 | 75 |
| MIMAT0026132 | cme-miR319d | 8 | _......_ | 3 | 75 |
| MIMAT0026130 | cme-miR319c | 8 | _......_ | 3 | 75 |
| MIMAT0026129 | cme-miR319a | 8 | _......_ | 3 | 75 |
| MIMAT0026128 | cme-miR319b | 8 | _......_ | 3 | 75 |
| MIMAT0025968 | mdm-miR319b | 8 | _......_ | 3 | 75 |
| MIMAT0025967 | mdm-miR319a | 8 | _......_ | 3 | 75 |
| MIMAT0027822 | mmu-miR-6961-5p | 7 | ......__ | 2 | 75 |
| MIMAT0025288 | hbr-miR408a | 8 | ......__ | 3 | 75 |
| MIMAT0025286 | hbr-miR319 | 8 | _......_ | 3 | 75 |
| MIMAT0025066 | rno-miR-6327 | 7 | _......_ | 2 | 75 |
| MIMAT0027300 | ppe-miR319a | 8 | _......_ | 3 | 75 |
| MIMAT0024802 | hvu-miR6179 | 3 | ......__ | 8 | 75 |
| MIMAT0024700 | nta-miR319b | 8 | _......_ | 3 | 75 |
| MIMAT0024699 | nta-miR319a | 8 | _......_ | 3 | 75 |
| MIMAT0027130 | lus-miR319b | 8 | _......_ | 3 | 75 |
| MIMAT0027123 | lus-miR319a | 8 | _......_ | 3 | 75 |
| MIMAT0024522 | cca-miR319 | 8 | _......_ | 3 | 75 |
| MIMAT0024386 | ppy-miR-4667 | 7 | ......__ | 2 | 75 |
| MIMAT0024222 | ggo-miR-455 | 2 | _......_ | 7 | 75 |
| MIMAT0023965 | cgr-miR-455-3p | 2 | _......_ | 7 | 75 |
| MIMAT0023935 | cgr-miR-365-5p | 7 | __...... | 2 | 75 |
| MIMAT0023271 | osa-miR5802 | 8 | _......_ | 3 | 75 |
| MIMAT0023155 | mtr-miR5741e | 8 | __...... | 3 | 75 |
| MIMAT0023147 | mtr-miR5741d | 8 | __...... | 3 | 75 |
| MIMAT0023139 | mtr-miR5741c | 8 | __...... | 3 | 75 |
| MIMAT0023123 | mtr-miR5741b | 8 | __...... | 3 | 75 |
| MIMAT0023118 | mtr-miR5741a | 8 | __...... | 3 | 75 |
| MIMAT0022761 | vun-miR319a | 8 | _......_ | 3 | 75 |
| MIMAT0022608 | ola-miR-455-3p | 3 | _......_ | 8 | 75 |
| MIMAT0022567 | ola-miR-1388-5p | 7 | _......_ | 2 | 75 |
| MIMAT0022394 | ath-miR5634 | 7 | __...... | 2 | 75 |
| MIMAT0022296 | hsa-miR-5588-3p | 2 | __...... | 7 | 75 |
| MIMAT0022679 | amg-miR319 | 8 | _......_ | 3 | 75 |
| MIMAT0022675 | aau-miR319 | 8 | _......_ | 3 | 75 |
| MIMAT0021965 | aca-miR-455-3p | 2 | _......_ | 7 | 75 |
| MIMAT0021947 | aca-miR-365-5p | 7 | __...... | 2 | 75 |
| MIMAT0021760 | aca-miR-1388-5p | 7 | _......_ | 2 | 75 |
| MIMAT0021667 | gma-miR319m | 8 | _......_ | 3 | 75 |
| MIMAT0021666 | gma-miR319l | 8 | _......_ | 3 | 75 |
| MIMAT0021665 | gma-miR319k | 8 | _......_ | 3 | 75 |
| MIMAT0021664 | gma-miR319j | 8 | _......_ | 3 | 75 |
| MIMAT0021663 | gma-miR319i | 8 | _......_ | 3 | 75 |
| MIMAT0021662 | gma-miR319h | 8 | _......_ | 3 | 75 |
| MIMAT0021661 | gma-miR319g | 8 | _......_ | 3 | 75 |
| MIMAT0021345 | mtr-miR5285c | 7 | __...... | 2 | 75 |
| MIMAT0021344 | mtr-miR5285b | 7 | __...... | 2 | 75 |
| MIMAT0021343 | mtr-miR5285a | 7 | __...... | 2 | 75 |
| MIMAT0020761 | bdi-miR319b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0020994 | gma-miR319f | 8 | _......_ | 3 | 75 |
| MIMAT0020993 | gma-miR319e | 8 | _......_ | 3 | 75 |
| MIMAT0020992 | gma-miR319d | 7 | _......_ | 2 | 75 |
| MIMAT0019869 | hsa-miR-4740-5p | 7 | _......_ | 2 | 75 |
| MIMAT0019716 | hsa-miR-4652-5p | 8 | __...... | 3 | 75 |
| MIMAT0019663 | pma-miR-4629 | 7 | ......__ | 2 | 75 |
| MIMAT0019059 | hsa-miR-1269b | 8 | _......_ | 3 | 75 |
| MIMAT0018248 | gma-miR4356 | 8 | _......_ | 3 | 75 |
| MIMAT0018211 | tae-miR319 | 8 | _......_ | 3 | 75 |
| MIMAT0018074 | hsa-miR-3654 | 6 | ......__ | 1 | 75 |
| MIMAT0016193 | ppy-miR-1269 | 8 | _......_ | 3 | 75 |
| MIMAT0016063 | ppy-miR-622 | 2 | _......_ | 7 | 75 |
| MIMAT0015900 | ppy-miR-455-3p | 2 | _......_ | 7 | 75 |
| MIMAT0017664 | aly-miR319d-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017461 | aly-miR166b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0017434 | aly-miR319c-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017432 | aly-miR319b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017430 | aly-miR319a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0015044 | hsa-miR-3169 | 8 | _......_ | 3 | 75 |
| MIMAT0014870 | mmu-miR-3081-5p | 6 | ......__ | 1 | 75 |
| MIMAT0014763 | api-miR-3027 | 1 | ......__ | 6 | 75 |
| MIMAT0014610 | tgu-miR-455-3p | 3 | _......_ | 8 | 75 |
| MIMAT0027019 | tgu-miR-1388-5p | 7 | _......_ | 2 | 75 |
| MIMAT0031088 | tgu-miR-365-2-5p | 8 | __...... | 3 | 75 |
| MIMAT0027013 | tgu-miR-365-1-5p | 6 | __...... | 1 | 75 |
| MIMAT0014468 | tgu-miR-2965 | 8 | _......_ | 3 | 75 |
| MIMAT0014183 | rco-miR319d | 8 | _......_ | 3 | 75 |
| MIMAT0014182 | rco-miR319c | 8 | _......_ | 3 | 75 |
| MIMAT0014181 | rco-miR319b | 8 | _......_ | 3 | 75 |
| MIMAT0014180 | rco-miR319a | 8 | _......_ | 3 | 75 |
| MIMAT0014077 | ctr-miR319 | 8 | _......_ | 3 | 75 |
| MIMAT0013960 | ssc-miR-455-3p | 2 | _......_ | 7 | 75 |
| MIMAT0017376 | ssc-miR-365-5p | 8 | __...... | 3 | 75 |
| MIMAT0013837 | bta-miR-193a | 6 | __...... | 1 | 75 |
| MIMAT0012884 | peu-miR2916 | 8 | __...... | 3 | 75 |
| MIMAT0013590 | bta-miR-1388-5p | 7 | _......_ | 2 | 75 |
| MIMAT0013549 | cte-miR-2692 | 1 | ......__ | 6 | 75 |
| MIMAT0013548 | cte-miR-1990c-3p | 7 | __...... | 2 | 75 |
| MIMAT0012573 | aqc-miR319 | 8 | _......_ | 3 | 75 |
| MIMAT0011794 | bta-miR-2287 | 8 | __...... | 3 | 75 |
| MIMAT0011346 | sbi-miR319b | 8 | _......_ | 3 | 75 |
| MIMAT0011292 | dre-miR-1388-5p | 7 | _......_ | 2 | 75 |
| MIMAT0011176 | pvu-miR319c | 8 | _......_ | 3 | 75 |
| MIMAT0011156 | hsa-miR-2114-5p | 2 | __...... | 7 | 75 |
| MIMAT0009426 | mmu-miR-1955-5p | 1 | __...... | 6 | 75 |
| MIMAT0008400 | hsv1-miR-H3-3p | 8 | __...... | 3 | 75 |
| MIMAT0019121 | tca-miR-219-3p | 7 | _......_ | 2 | 75 |
| MIMAT0008157 | ptr-miR-455 | 2 | _......_ | 7 | 75 |
| MIMAT0008006 | ptr-miR-1288 | 7 | _......_ | 2 | 75 |
| MIMAT0007866 | mmu-miR-1905 | 3 | ......__ | 8 | 75 |
| MIMAT0006471 | mml-miR-625 | 6 | _......_ | 1 | 75 |
| MIMAT0006340 | mml-miR-455-3p | 2 | _......_ | 7 | 75 |
| MIMAT0031081 | mml-miR-365-2-5p | 8 | __...... | 3 | 75 |
| MIMAT0026856 | mml-miR-365-1-5p | 8 | __...... | 3 | 75 |
| MIMAT0007168 | oan-miR-1388-5p | 7 | _......_ | 2 | 75 |
| MIMAT0007024 | oan-miR-1362-3p | 1 | _......_ | 6 | 75 |
| MIMAT0006822 | oan-miR-365-1-5p | 7 | __...... | 2 | 75 |
| MIMAT0005706 | vvi-miR319g | 8 | _......_ | 3 | 75 |
| MIMAT0005705 | vvi-miR319f | 8 | _......_ | 3 | 75 |
| MIMAT0005704 | vvi-miR319c | 8 | _......_ | 3 | 75 |
| MIMAT0005703 | vvi-miR319b | 8 | _......_ | 3 | 75 |
| MIMAT0005942 | hsa-miR-1288-3p | 7 | _......_ | 2 | 75 |
| MIMAT0005923 | hsa-miR-1269a | 8 | _......_ | 3 | 75 |
| MIMAT0017308 | rno-miR-455-3p | 2 | _......_ | 7 | 75 |
| MIMAT0017289 | rno-miR-871-3p | 7 | ......__ | 2 | 75 |
| MIMAT0004455 | mdv2-miR-M16-5p | 3 | ......__ | 8 | 75 |
| MIMAT0004997 | pta-miR319 | 8 | _......_ | 3 | 75 |
| MIMAT0011082 | mtr-miR319b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017265 | mmu-miR-871-3p | 7 | ......__ | 2 | 75 |
| MIMAT0012539 | bta-miR-365-5p | 7 | __...... | 2 | 75 |
| MIMAT0026683 | mdo-miR-365-5p | 8 | __...... | 3 | 75 |
| MIMAT0003922 | mdv1-miR-M2-3p | 7 | _......_ | 2 | 75 |
| MIMAT0003836 | bta-miR-455-3p | 2 | _......_ | 7 | 75 |
| MIMAT0003742 | mmu-miR-455-3p | 2 | _......_ | 7 | 75 |
| MIMAT0003455 | mmu-miR-679-5p | 6 | _......_ | 1 | 75 |
| MIMAT0006788 | gga-miR-455-3p | 3 | _......_ | 8 | 75 |
| MIMAT0031075 | gga-miR-365-2-5p | 8 | __...... | 3 | 75 |
| MIMAT0026630 | gga-miR-365-1-5p | 8 | __...... | 3 | 75 |
| MIMAT0004784 | hsa-miR-455-3p | 2 | _......_ | 7 | 75 |
| MIMAT0002138 | ssc-miR-301 | 1 | _......_ | 6 | 75 |
| MIMAT0002009 | ptc-miR319h | 8 | _......_ | 3 | 75 |
| MIMAT0002008 | ptc-miR319g | 8 | _......_ | 3 | 75 |
| MIMAT0002007 | ptc-miR319f | 8 | _......_ | 3 | 75 |
| MIMAT0002006 | ptc-miR319e | 8 | _......_ | 3 | 75 |
| MIMAT0002005 | ptc-miR319d | 8 | _......_ | 3 | 75 |
| MIMAT0002004 | ptc-miR319c | 8 | _......_ | 3 | 75 |
| MIMAT0002003 | ptc-miR319b | 8 | _......_ | 3 | 75 |
| MIMAT0002002 | ptc-miR319a | 8 | _......_ | 3 | 75 |
| MIMAT0031982 | dre-miR-193b-5p | 7 | __...... | 2 | 75 |
| MIMAT0001718 | zma-miR319d-3p | 8 | _......_ | 3 | 75 |
| MIMAT0001717 | zma-miR319b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0001716 | zma-miR319c-3p | 8 | _......_ | 3 | 75 |
| MIMAT0001715 | zma-miR319a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0001691 | gma-miR319c | 8 | _......_ | 3 | 75 |
| MIMAT0001685 | gma-miR319b | 8 | _......_ | 3 | 75 |
| MIMAT0001684 | gma-miR319a | 8 | _......_ | 3 | 75 |
| MIMAT0001653 | mtr-miR319a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017184 | rno-miR-365-5p | 8 | __...... | 3 | 75 |
| MIMAT0017179 | mmu-miR-365-2-5p | 7 | __...... | 2 | 75 |
| MIMAT0001469 | sbi-miR319a | 8 | _......_ | 3 | 75 |
| MIMAT0001029 | osa-miR319b | 8 | _......_ | 3 | 75 |
| MIMAT0001028 | osa-miR319a-3p.2-3p | 8 | _......_ | 3 | 75 |
| MIMAT0001016 | ath-miR319c | 8 | _......_ | 3 | 75 |
| MIMAT0022833 | hsa-miR-365b-5p | 7 | __...... | 2 | 75 |
| MIMAT0017077 | mmu-miR-365-1-5p | 7 | __...... | 2 | 75 |
| MIMAT0009199 | hsa-miR-365a-5p | 7 | __...... | 2 | 75 |
| MIMAT0000512 | ath-miR319b | 8 | _......_ | 3 | 75 |
| MIMAT0000511 | ath-miR319a | 8 | _......_ | 3 | 75 |
| MIMAT0031881 | ath-miR166b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0031880 | ath-miR166a-5p | 6 | _......_ | 1 | 75 |
