| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccatctt | 7 | ||
| MIMAT0030945 | stu-miR8035 | 2 | ....... | 8 | 100 |
| MIMAT0019736 | hsa-miR-4662b | 8 | ....... | 2 | 100 |
| MIMAT0019709 | hsa-miR-4647 | 8 | ....... | 2 | 100 |
| MIMAT0018941 | hsa-miR-4426 | 8 | ....... | 2 | 100 |
| MIMAT0015652 | hsv2-miR-H6-3p | 2 | ....... | 8 | 100 |
| MIMAT0017630 | aly-miR844-3p | 1 | ....... | 7 | 100 |
| MIMAT0009442 | mmu-miR-1969 | 7 | ....... | 1 | 100 |
| MIMAT0017128 | rno-miR-141-5p | 2 | ....... | 8 | 100 |
| MIMAT0037205 | ata-miR9674a-3p | 8 | _...... | 3 | 85 |
| MIMAT0035648 | dvi-miR-975-3p | 8 | _...... | 3 | 85 |
| MIMAT0034592 | eca-miR-9048 | 1 | ......_ | 6 | 85 |
| MIMAT0033951 | atr-miR2950 | 3 | ......_ | 8 | 85 |
| MIMAT0033857 | atr-miR8574 | 2 | _...... | 7 | 85 |
| MIMAT0033843 | atr-miR8567 | 8 | _...... | 3 | 85 |
| MIMAT0033764 | pxy-miR-8523 | 8 | _...... | 3 | 85 |
| MIMAT0033686 | sma-miR-8482-3p | 7 | _...... | 2 | 85 |
| MIMAT0033366 | str-miR-8371-5p | 6 | ......_ | 1 | 85 |
| MIMAT0032479 | ssa-miR-200b-5p | 1 | _...... | 6 | 85 |
| MIMAT0032478 | ssa-miR-200a-3-5p | 1 | _...... | 6 | 85 |
| MIMAT0032477 | ssa-miR-200a-2-5p | 1 | _...... | 6 | 85 |
| MIMAT0032475 | ssa-miR-200a-1-5p | 1 | _...... | 6 | 85 |
| MIMAT0032389 | ssa-miR-153a-2-5p | 2 | _...... | 7 | 85 |
| MIMAT0031831 | cpa-miR8138 | 8 | _...... | 3 | 85 |
| MIMAT0031708 | bbe-miR-4891-5p | 6 | _...... | 1 | 85 |
| MIMAT0031288 | stu-miR172c-5p | 3 | _...... | 8 | 85 |
| MIMAT0030972 | stu-miR8048-3p | 6 | ......_ | 1 | 85 |
| MIMAT0030556 | prd-miR-7940b-5p | 8 | _...... | 3 | 85 |
| MIMAT0030455 | prd-miR-100-3p | 3 | _...... | 8 | 85 |
| MIMAT0030402 | ptc-miR7821 | 6 | ......_ | 1 | 85 |
| MIMAT0030308 | bdi-miR7777-3p.2 | 8 | ......_ | 3 | 85 |
| MIMAT0029309 | mes-miR2950 | 3 | ......_ | 8 | 85 |
| MIMAT0028632 | mdo-miR-7316-5p | 7 | _...... | 2 | 85 |
| MIMAT0028577 | mdo-miR-7296-3p | 7 | _...... | 2 | 85 |
| MIMAT0028041 | mmu-miR-6769b-3p | 1 | _...... | 6 | 85 |
| MIMAT0027837 | mmu-miR-6967-3p | 2 | _...... | 7 | 85 |
| MIMAT0025716 | gga-miR-6620-5p | 8 | ......_ | 3 | 85 |
| MIMAT0025661 | gga-miR-6577-5p | 1 | _...... | 6 | 85 |
| MIMAT0025652 | gga-miR-6572-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025045 | sma-miR-8-5p | 1 | _...... | 6 | 85 |
| MIMAT0024787 | hbr-miR482a | 6 | ......_ | 1 | 85 |
| MIMAT0023015 | bra-miR1885b | 3 | _...... | 8 | 85 |
| MIMAT0022337 | cin-miR-5605-5p | 3 | ......_ | 8 | 85 |
| MIMAT0022120 | osa-miR5487 | 7 | _...... | 2 | 85 |
| MIMAT0021846 | aca-miR-200b-5p | 1 | _...... | 6 | 85 |
| MIMAT0021844 | aca-miR-200a-5p | 1 | _...... | 6 | 85 |
| MIMAT0020601 | hsa-miR-1273f | 8 | ......_ | 3 | 85 |
| MIMAT0022982 | gma-miR2118b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0022981 | gma-miR2118a-5p | 8 | ......_ | 3 | 85 |
| MIMAT0020480 | bfl-miR-4891-5p | 6 | _...... | 1 | 85 |
| MIMAT0019509 | pma-miR-200b-5p | 1 | _...... | 6 | 85 |
| MIMAT0018009 | vvi-miR2950-5p | 3 | ......_ | 8 | 85 |
| MIMAT0017902 | rno-miR-741-3p | 7 | _...... | 2 | 85 |
| MIMAT0016251 | sja-miR-8-5p | 1 | _...... | 6 | 85 |
| MIMAT0016018 | ppy-miR-576-3p | 6 | _...... | 1 | 85 |
| MIMAT0015634 | bmo-miR-3426 | 7 | _...... | 2 | 85 |
| MIMAT0015563 | bmo-miR-3374-5p | 8 | _...... | 3 | 85 |
| MIMAT0014640 | tgu-miR-200a-5p | 1 | _...... | 6 | 85 |
| MIMAT0014408 | cqu-miR-8-5p | 1 | _...... | 6 | 85 |
| MIMAT0014214 | aae-miR-8-5p | 1 | _...... | 6 | 85 |
| MIMAT0013751 | bmo-miR-2837 | 6 | ......_ | 1 | 85 |
| MIMAT0013538 | cte-miR-2686c | 6 | _...... | 1 | 85 |
| MIMAT0013537 | cte-miR-2686b | 6 | _...... | 1 | 85 |
| MIMAT0013536 | cte-miR-2686a-3p | 6 | _...... | 1 | 85 |
| MIMAT0011981 | bta-miR-2417 | 6 | ......_ | 1 | 85 |
| MIMAT0011564 | crm-miR-48-3p | 2 | _...... | 7 | 85 |
| MIMAT0010148 | lmi-miR-8-5p | 1 | _...... | 6 | 85 |
| MIMAT0010058 | osa-miR2097-5p | 8 | ......_ | 3 | 85 |
| MIMAT0010051 | osa-miR2093-3p | 2 | _...... | 7 | 85 |
| MIMAT0009865 | cfa-miR-200a | 1 | _...... | 6 | 85 |
| MIMAT0009864 | cfa-miR-200b | 1 | _...... | 6 | 85 |
| MIMAT0009406 | mmu-miR-1941-3p | 1 | _...... | 6 | 85 |
| MIMAT0032077 | dvi-miR-8-5p | 1 | _...... | 6 | 85 |
| MIMAT0019100 | tca-miR-8-5p | 1 | _...... | 6 | 85 |
| MIMAT0008250 | ptr-miR-576 | 6 | _...... | 1 | 85 |
| MIMAT0006437 | mml-miR-576-3p | 6 | _...... | 1 | 85 |
| MIMAT0026842 | mml-miR-200a-5p | 1 | _...... | 6 | 85 |
| MIMAT0007709 | gga-miR-1795 | 8 | _...... | 3 | 85 |
| MIMAT0007616 | gga-miR-1719 | 7 | _...... | 2 | 85 |
| MIMAT0006937 | oan-miR-200b-5p | 1 | _...... | 6 | 85 |
| MIMAT0006935 | oan-miR-200a-5p | 1 | _...... | 6 | 85 |
| MIMAT0005189 | ppt-miR1063h | 1 | _...... | 6 | 85 |
| MIMAT0005188 | ppt-miR1063g | 1 | _...... | 6 | 85 |
| MIMAT0005187 | ppt-miR1063f | 1 | _...... | 6 | 85 |
| MIMAT0005186 | ppt-miR1063e | 1 | _...... | 6 | 85 |
| MIMAT0005185 | ppt-miR1063d | 1 | _...... | 6 | 85 |
| MIMAT0005184 | ppt-miR1063c | 1 | _...... | 6 | 85 |
| MIMAT0005183 | ppt-miR1063b | 1 | _...... | 6 | 85 |
| MIMAT0005182 | ppt-miR1063a | 1 | _...... | 6 | 85 |
| MIMAT0004157 | mdo-miR-200a-5p | 1 | _...... | 6 | 85 |
| MIMAT0026694 | mdo-miR-200c-5p | 1 | _...... | 6 | 85 |
| MIMAT0015224 | bmo-miR-8-5p | 1 | _...... | 6 | 85 |
| MIMAT0004796 | hsa-miR-576-3p | 6 | _...... | 1 | 85 |
| MIMAT0031986 | dre-miR-200c-5p | 1 | _...... | 6 | 85 |
| MIMAT0031985 | dre-miR-200b-5p | 1 | _...... | 6 | 85 |
| MIMAT0031984 | dre-miR-200a-5p | 1 | _...... | 6 | 85 |
| MIMAT0031974 | dre-miR-141-5p | 1 | _...... | 6 | 85 |
| MIMAT0001322 | ath-miR414 | 2 | _...... | 7 | 85 |
| MIMAT0026533 | gga-miR-200a-5p | 1 | _...... | 6 | 85 |
| MIMAT0017152 | rno-miR-200b-5p | 1 | _...... | 6 | 85 |
| MIMAT0017151 | rno-miR-200a-5p | 1 | _...... | 6 | 85 |
| MIMAT0001620 | hsa-miR-200a-5p | 1 | _...... | 6 | 85 |
| MIMAT0004619 | mmu-miR-200a-5p | 1 | _...... | 6 | 85 |
| MIMAT0004598 | hsa-miR-141-5p | 1 | _...... | 6 | 85 |
| MIMAT0004571 | hsa-miR-200b-5p | 1 | _...... | 6 | 85 |
| MIMAT0004545 | mmu-miR-200b-5p | 1 | _...... | 6 | 85 |
| MIMAT0004533 | mmu-miR-141-5p | 1 | _...... | 6 | 85 |
| MIMAT0020791 | dme-miR-8-5p | 1 | _...... | 6 | 85 |
