| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cccccgg | 7 | ||
| MIMAT0027582 | hsa-miR-6840-5p | 2 | ....... | 8 | 100 |
| MIMAT0025310 | prv-miR-LLT7 | 7 | ....... | 1 | 100 |
| MIMAT0012600 | bmo-miR-2724 | 2 | ....... | 8 | 100 |
| MIMAT0012598 | hsv1-miR-H8-3p | 2 | ....... | 8 | 100 |
| MIMAT0035711 | bhv5-miR-B14 | 6 | ......_ | 1 | 85 |
| MIMAT0035228 | dme-miR-9382-3p | 3 | _...... | 8 | 85 |
| MIMAT0034798 | efu-miR-9208 | 3 | ......_ | 8 | 85 |
| MIMAT0034786 | efu-miR-9200b | 8 | ......_ | 3 | 85 |
| MIMAT0030648 | prd-miR-7911b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0030646 | prd-miR-7911a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028149 | ssc-miR-7137-5p | 6 | ......_ | 1 | 85 |
| MIMAT0026409 | sbi-miR6221-3p | 6 | _...... | 1 | 85 |
| MIMAT0028022 | mmu-miR-7059-5p | 7 | _...... | 2 | 85 |
| MIMAT0027911 | mmu-miR-7003-3p | 1 | _...... | 6 | 85 |
| MIMAT0027468 | hsa-miR-6784-5p | 7 | _...... | 2 | 85 |
| MIMAT0027427 | hsa-miR-6763-3p | 3 | _...... | 8 | 85 |
| MIMAT0022290 | hsa-miR-5587-3p | 2 | _...... | 7 | 85 |
| MIMAT0021082 | hsa-miR-5090 | 6 | _...... | 1 | 85 |
| MIMAT0020498 | bfl-miR-4903 | 3 | _...... | 8 | 85 |
| MIMAT0020115 | bfl-miR-4872b | 8 | _...... | 3 | 85 |
| MIMAT0019947 | hsa-miR-4783-3p | 1 | _...... | 6 | 85 |
| MIMAT0019807 | hsa-miR-4707-5p | 2 | _...... | 7 | 85 |
| MIMAT0019721 | hsa-miR-4655-5p | 8 | _...... | 3 | 85 |
| MIMAT0019574 | pma-miR-4544-3p | 7 | _...... | 2 | 85 |
| MIMAT0019071 | hsa-miR-4532 | 1 | _...... | 6 | 85 |
| MIMAT0019071 | hsa-miR-4532 | 8 | _...... | 3 | 85 |
| MIMAT0016595 | cin-miR-4053-5p | 8 | _...... | 3 | 85 |
| MIMAT0014693 | hsv1-miR-H15 | 3 | _...... | 8 | 85 |
| MIMAT0014549 | tgu-miR-2992 | 1 | _...... | 6 | 85 |
| MIMAT0013848 | bta-miR-2890 | 2 | _...... | 7 | 85 |
| MIMAT0013847 | bta-miR-2889 | 3 | _...... | 8 | 85 |
| MIMAT0011817 | bta-miR-2305 | 6 | ......_ | 1 | 85 |
| MIMAT0011808 | bta-miR-2299-3p | 7 | _...... | 2 | 85 |
| MIMAT0007867 | mmu-miR-1895 | 1 | ......_ | 6 | 85 |
| MIMAT0007196 | oan-miR-1394 | 7 | _...... | 2 | 85 |
| MIMAT0022721 | hsa-miR-1247-3p | 1 | _...... | 6 | 85 |
| MIMAT0022946 | hsa-miR-1237-5p | 6 | ......_ | 1 | 85 |
| MIMAT0005395 | cre-miR1151b-5p | 7 | _...... | 2 | 85 |
| MIMAT0005393 | cre-miR1151a-5p | 7 | _...... | 2 | 85 |
| MIMAT0004824 | mmu-miR-673-3p | 7 | _...... | 2 | 85 |
