| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cccgaaac | 8 | ||
| MIMAT0035214 | dme-miR-9375-3p | 1 | _....... | 7 | 87 |
| MIMAT0022499 | hsa-miR-5705 | 8 | _....... | 2 | 87 |
| MIMAT0014875 | mmu-miR-3083-3p | 2 | _....... | 8 | 87 |
| MIMAT0005151 | ppt-miR1041 | 8 | ......._ | 2 | 87 |
| MIMAT0037287 | ame-miR-9883 | 6 | ......__ | 1 | 75 |
| MIMAT0036976 | bta-miR-3432b | 6 | ......__ | 1 | 75 |
| MIMAT0036957 | oha-miR-9-4-5p | 8 | _......_ | 3 | 75 |
| MIMAT0036953 | oha-miR-9-1-5p | 7 | _......_ | 2 | 75 |
| MIMAT0036348 | gma-miR5671b | 3 | ......__ | 8 | 75 |
| MIMAT0035764 | tae-miR9654b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0035323 | gsa-miR-9390-3p | 2 | __...... | 7 | 75 |
| MIMAT0034404 | cfa-miR-8896 | 6 | ......__ | 1 | 75 |
| MIMAT0033245 | ppc-miR-8348-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030893 | stu-miR8003 | 7 | _......_ | 2 | 75 |
| MIMAT0030210 | bdi-miR7737-5p | 6 | _......_ | 1 | 75 |
| MIMAT0029351 | lja-miR7528 | 1 | _......_ | 6 | 75 |
| MIMAT0025165 | mmu-miR-6412 | 2 | __...... | 7 | 75 |
| MIMAT0023310 | osa-miR5835 | 2 | __...... | 7 | 75 |
| MIMAT0023162 | gma-miR5765 | 1 | __...... | 6 | 75 |
| MIMAT0023129 | mtr-miR5749 | 6 | ......__ | 1 | 75 |
| MIMAT0022323 | cin-miR-5600-5p | 2 | __...... | 7 | 75 |
| MIMAT0022022 | aca-miR-5407-5p | 6 | _......_ | 1 | 75 |
| MIMAT0021576 | asu-miR-5357-5p | 3 | ......__ | 8 | 75 |
| MIMAT0021492 | asu-miR-100c-3p | 8 | __...... | 3 | 75 |
| MIMAT0021016 | gma-miR4998 | 7 | __...... | 2 | 75 |
| MIMAT0019674 | osa-miR3979-3p | 7 | ......__ | 2 | 75 |
| MIMAT0018491 | csi-miR3950 | 8 | _......_ | 3 | 75 |
| MIMAT0018360 | hsa-miR-3944-3p | 6 | ......__ | 1 | 75 |
| MIMAT0018138 | pab-miR3706 | 6 | _......_ | 1 | 75 |
| MIMAT0016430 | cin-miR-4000a-5p | 1 | __...... | 6 | 75 |
| MIMAT0017778 | esi-miR3462-3p | 7 | ......__ | 2 | 75 |
| MIMAT0015546 | bmo-miR-3360 | 6 | _......_ | 1 | 75 |
| MIMAT0013348 | mtr-miR2627 | 6 | _......_ | 1 | 75 |
| MIMAT0012453 | dsi-miR-995-5p | 2 | ......__ | 7 | 75 |
| MIMAT0011883 | bta-miR-2348 | 6 | ......__ | 1 | 75 |
| MIMAT0005549 | mcmv-miR-m59-2 | 1 | ......__ | 6 | 75 |
| MIMAT0010206 | dme-miR-995-5p | 1 | ......__ | 6 | 75 |
| MIMAT0001002 | ath-miR401 | 1 | __...... | 6 | 75 |
