| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cccgatga | 8 | ||
| MIMAT0004409 | rrv-miR-rR1-3 | 1 | ........ | 8 | 100 |
| MIMAT0036225 | chi-miR-425-3p | 7 | ......._ | 1 | 87 |
| MIMAT0034749 | eca-miR-425 | 8 | ......._ | 2 | 87 |
| MIMAT0029565 | ipu-miR-7566 | 7 | _....... | 1 | 87 |
| MIMAT0023959 | cgr-miR-425-3p | 7 | ......._ | 1 | 87 |
| MIMAT0014471 | tgu-miR-425-3p | 7 | ......._ | 1 | 87 |
| MIMAT0007155 | oan-miR-425-3p | 7 | ......._ | 1 | 87 |
| MIMAT0015416 | bmo-miR-3234 | 8 | .a...... | 1 | 87 |
| MIMAT0037286 | ame-miR-9882 | 3 | __...... | 8 | 75 |
| MIMAT0037220 | ata-miR2118b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0036083 | chi-miR-2320 | 2 | __...... | 7 | 75 |
| MIMAT0035956 | chi-miR-136-3p | 7 | __...... | 2 | 75 |
| MIMAT0035698 | bra-miR9568-3p | 6 | __...... | 1 | 75 |
| MIMAT0035474 | sly-miR9478-3p | 3 | __...... | 8 | 75 |
| MIMAT0035204 | dme-miR-9370-3p | 1 | ......__ | 6 | 75 |
| MIMAT0034468 | eca-miR-8939 | 3 | _......_ | 8 | 75 |
| MIMAT0034041 | gra-miR7503b | 3 | _......_ | 8 | 75 |
| MIMAT0033873 | atr-miR8616 | 6 | __...... | 1 | 75 |
| MIMAT0033825 | atr-miR8554 | 3 | __...... | 8 | 75 |
| MIMAT0033824 | atr-miR8553a | 6 | ......__ | 1 | 75 |
| MIMAT0033402 | str-miR-87a-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033291 | ppc-miR-8362-3p | 1 | __...... | 6 | 75 |
| MIMAT0033061 | ppc-miR-8280-5p | 3 | ......__ | 8 | 75 |
| MIMAT0033057 | ppc-miR-8279-5p | 3 | ......__ | 8 | 75 |
| MIMAT0032986 | ppc-miR-8259-5p | 3 | __...... | 8 | 75 |
| MIMAT0032892 | ppc-miR-8225-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030728 | prd-miR-7948a-5p | 6 | _......_ | 1 | 75 |
| MIMAT0030694 | prd-miR-7948b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0030660 | prd-miR-7948c-5p | 6 | _......_ | 1 | 75 |
| MIMAT0029632 | crm-miR-392 | 7 | __...... | 2 | 75 |
| MIMAT0026380 | bma-miR-5880a | 7 | _......_ | 2 | 75 |
| MIMAT0025339 | pde-miR947 | 6 | _......_ | 1 | 75 |
| MIMAT0023563 | tca-miR-6011-5p | 1 | __...... | 6 | 75 |
| MIMAT0023501 | hco-miR-5987 | 3 | ......__ | 8 | 75 |
| MIMAT0022432 | ath-miR5659 | 1 | __...... | 6 | 75 |
| MIMAT0022170 | osa-miR5534b | 1 | __...... | 6 | 75 |
| MIMAT0022149 | osa-miR5515 | 1 | _......_ | 6 | 75 |
| MIMAT0022112 | pti-miR5479 | 3 | __...... | 8 | 75 |
| MIMAT0021433 | asu-miR-43d-5p | 3 | ......__ | 8 | 75 |
| MIMAT0021368 | mtr-miR5297 | 6 | ......__ | 1 | 75 |
| MIMAT0020598 | ssc-miR-2320-3p | 1 | __...... | 6 | 75 |
| MIMAT0020582 | osa-miR5082 | 3 | __...... | 8 | 75 |
| MIMAT0020577 | bdi-miR5068 | 6 | ......__ | 1 | 75 |
| MIMAT0021051 | gma-miR1523b | 6 | __...... | 1 | 75 |
| MIMAT0020224 | dme-miR-4986-3p | 7 | _......_ | 2 | 75 |
| MIMAT0020150 | dme-miR-4942-3p | 2 | __...... | 7 | 75 |
| MIMAT0018296 | gma-miR1520o | 6 | __...... | 1 | 75 |
| MIMAT0018888 | tca-miR-3893-5p | 1 | _......_ | 6 | 75 |
| MIMAT0016764 | cin-miR-4158-5p | 3 | ......__ | 8 | 75 |
| MIMAT0015061 | hsa-miR-3181 | 6 | ......__ | 1 | 75 |
| MIMAT0013918 | ssc-miR-425-3p | 6 | ......__ | 1 | 75 |
| MIMAT0011845 | bta-miR-2320-3p | 2 | __...... | 7 | 75 |
| MIMAT0011761 | zma-miR2118b | 3 | ......__ | 8 | 75 |
| MIMAT0011756 | osa-miR2118q | 3 | ......__ | 8 | 75 |
| MIMAT0011755 | osa-miR2118p | 3 | ......__ | 8 | 75 |
| MIMAT0011753 | osa-miR2118n | 3 | ......__ | 8 | 75 |
| MIMAT0011742 | osa-miR2118c | 3 | ......__ | 8 | 75 |
| MIMAT0011741 | osa-miR2118b | 3 | ......__ | 8 | 75 |
| MIMAT0011701 | ppc-miR-2266 | 3 | ......__ | 8 | 75 |
| MIMAT0011688 | ppc-miR-2262 | 3 | ......__ | 8 | 75 |
| MIMAT0012158 | sme-miR-36c-5p | 1 | __...... | 6 | 75 |
| MIMAT0017306 | rno-miR-425-3p | 6 | ......__ | 1 | 75 |
| MIMAT0005007 | pta-miR947 | 6 | _......_ | 1 | 75 |
| MIMAT0004299 | cbr-miR-392 | 8 | __...... | 3 | 75 |
| MIMAT0004153 | mdo-miR-425-3p | 6 | ......__ | 1 | 75 |
| MIMAT0003833 | bta-miR-425-3p | 6 | ......__ | 1 | 75 |
| MIMAT0005461 | xtr-miR-181a-2-3p | 8 | _......_ | 3 | 75 |
| MIMAT0019088 | rlcv-miR-rL1-10-5p | 6 | ......__ | 1 | 75 |
| MIMAT0001343 | hsa-miR-425-3p | 6 | ......__ | 1 | 75 |
| MIMAT0001342 | mmu-miR-425-3p | 6 | ......__ | 1 | 75 |
| MIMAT0004733 | rno-miR-136-3p | 8 | __...... | 3 | 75 |
| MIMAT0000768 | cel-miR-392-3p | 8 | __...... | 3 | 75 |
| MIMAT0004606 | hsa-miR-136-3p | 8 | __...... | 3 | 75 |
| MIMAT0004532 | mmu-miR-136-3p | 7 | __...... | 2 | 75 |
