| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cccgtcag | 8 | ||
| MIMAT0033687 | sma-miR-8483-5p | 2 | _....... | 8 | 87 |
| MIMAT0032814 | cel-miR-8200-3p | 8 | _....... | 2 | 87 |
| MIMAT0030288 | bdi-miR7769-5p | 1 | _....... | 7 | 87 |
| MIMAT0005140 | ppt-miR1033e | 7 | ......._ | 1 | 87 |
| MIMAT0005139 | ppt-miR1033d | 7 | ......._ | 1 | 87 |
| MIMAT0005138 | ppt-miR1033c | 7 | ......._ | 1 | 87 |
| MIMAT0005137 | ppt-miR1033b | 7 | ......._ | 1 | 87 |
| MIMAT0005136 | ppt-miR1033a | 7 | ......._ | 1 | 87 |
| MIMAT0020020 | sko-miR-4819-3p | 1 | .g...... | 8 | 87 |
| MIMAT0012028 | bta-miR-2450c | 1 | .a...... | 8 | 87 |
| MIMAT0007414 | gga-miR-1557 | 1 | ......g. | 8 | 87 |
| MIMAT0012546 | mdv2-miR-M30-3p | 8 | .a...... | 1 | 87 |
| MIMAT0036594 | tch-miR-1247-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035727 | rno-miR-149-3p | 8 | ......__ | 3 | 75 |
| MIMAT0035721 | rno-miR-1247-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035685 | bra-miR9563a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035507 | bdi-miR9498 | 3 | _......_ | 8 | 75 |
| MIMAT0034466 | eca-miR-8937 | 2 | ......__ | 7 | 75 |
| MIMAT0034142 | gra-miR7486i | 7 | __...... | 2 | 75 |
| MIMAT0033780 | pxy-miR-8534-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033199 | ppc-miR-8327-3p | 8 | _......_ | 3 | 75 |
| MIMAT0033130 | ppc-miR-360-3p | 1 | ......__ | 6 | 75 |
| MIMAT0032992 | ppc-miR-8250c-3p | 3 | __...... | 8 | 75 |
| MIMAT0032966 | ppc-miR-2238j-5p | 2 | __...... | 7 | 75 |
| MIMAT0032864 | ppc-miR-8217-5p | 2 | __...... | 7 | 75 |
| MIMAT0028358 | mml-miR-1247-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028049 | mmu-miR-7071-3p | 6 | __...... | 1 | 75 |
| MIMAT0025837 | gga-miR-6599-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025549 | bta-miR-1247-5p | 2 | ......__ | 7 | 75 |
| MIMAT0025015 | hme-miR-6308-3p | 7 | ......__ | 2 | 75 |
| MIMAT0026470 | hme-miR-6301-2-5p | 3 | __...... | 8 | 75 |
| MIMAT0024191 | ggo-miR-483 | 8 | ......__ | 3 | 75 |
| MIMAT0022137 | osa-miR5504 | 8 | _......_ | 3 | 75 |
| MIMAT0019617 | pma-miR-4584 | 7 | __...... | 2 | 75 |
| MIMAT0018766 | tca-miR-3855-5p | 3 | __...... | 8 | 75 |
| MIMAT0016562 | cin-miR-4036-3p | 6 | ......__ | 1 | 75 |
| MIMAT0016172 | ppy-miR-1247 | 2 | ......__ | 7 | 75 |
| MIMAT0017484 | aly-miR168b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0014728 | api-miR-2c | 1 | _......_ | 6 | 75 |
| MIMAT0011573 | crm-miR-2-5p | 1 | _......_ | 6 | 75 |
| MIMAT0011460 | cel-miR-2219-3p | 6 | __...... | 1 | 75 |
| MIMAT0032099 | dvi-miR-92a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0007973 | ptr-miR-1247 | 2 | ......__ | 7 | 75 |
| MIMAT0005899 | hsa-miR-1247-5p | 2 | ......__ | 7 | 75 |
| MIMAT0014800 | mmu-miR-1247-5p | 2 | ......__ | 7 | 75 |
| MIMAT0017201 | rno-miR-483-5p | 8 | ......__ | 3 | 75 |
| MIMAT0004782 | mmu-miR-483-5p | 8 | ......__ | 3 | 75 |
| MIMAT0004761 | hsa-miR-483-5p | 8 | ......__ | 3 | 75 |
| MIMAT0020802 | dme-miR-92a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0031885 | ath-miR168b-3p | 1 | ......__ | 6 | 75 |
