| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cccgtggg | 8 | ||
| MIMAT0028186 | dev-miR-D13-5p | 1 | ........ | 8 | 100 |
| MIMAT0028168 | hcmv-miR-US29-3p | 7 | _....... | 1 | 87 |
| MIMAT0028084 | mmu-miR-7089-5p | 1 | _....... | 7 | 87 |
| MIMAT0025332 | pde-miR396 | 8 | _....... | 2 | 87 |
| MIMAT0021955 | aca-miR-425-3p | 7 | ......._ | 1 | 87 |
| MIMAT0010060 | osa-miR2098-5p | 2 | ......._ | 8 | 87 |
| MIMAT0007231 | oan-miR-146a-3p | 2 | ......._ | 8 | 87 |
| MIMAT0018101 | hsa-miR-3677-3p | 1 | .t...... | 8 | 87 |
| MIMAT0036730 | oha-miR-146b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0036694 | oha-miR-132-5p | 2 | _......_ | 7 | 75 |
| MIMAT0035905 | chi-miR-105b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0035750 | rno-miR-5132-5p | 1 | __...... | 6 | 75 |
| MIMAT0034860 | efu-miR-9246a | 8 | __...... | 3 | 75 |
| MIMAT0034786 | efu-miR-9200b | 6 | ......__ | 1 | 75 |
| MIMAT0034674 | eca-miR-1379 | 7 | ......__ | 2 | 75 |
| MIMAT0033941 | atr-miR396d | 8 | _......_ | 3 | 75 |
| MIMAT0032334 | ssa-miR-132-4-5p | 2 | _......_ | 7 | 75 |
| MIMAT0032333 | ssa-miR-132-3-5p | 2 | _......_ | 7 | 75 |
| MIMAT0032331 | ssa-miR-132-5p | 2 | _......_ | 7 | 75 |
| MIMAT0031551 | ppe-miR8128-3p | 2 | __...... | 7 | 75 |
| MIMAT0029405 | ipu-miR-132a | 2 | _......_ | 7 | 75 |
| MIMAT0029056 | gga-miR-7451-5p | 1 | __...... | 6 | 75 |
| MIMAT0028880 | mdo-miR-7391-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028356 | mml-miR-7197-5p | 6 | _......_ | 1 | 75 |
| MIMAT0026162 | cme-miR396e | 8 | _......_ | 3 | 75 |
| MIMAT0025995 | mdm-miR396g | 8 | _......_ | 3 | 75 |
| MIMAT0025994 | mdm-miR396f | 8 | _......_ | 3 | 75 |
| MIMAT0027912 | mmu-miR-7004-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027606 | hsa-miR-6853-5p | 3 | __...... | 8 | 75 |
| MIMAT0023758 | cgr-miR-132-5p | 2 | _......_ | 7 | 75 |
| MIMAT0023539 | ame-miR-6000a-5p | 1 | __...... | 6 | 75 |
| MIMAT0023451 | hco-miR-5949 | 1 | __...... | 6 | 75 |
| MIMAT0023434 | hco-miR-5939 | 3 | _......_ | 8 | 75 |
| MIMAT0023265 | osa-miR5797 | 2 | __...... | 7 | 75 |
| MIMAT0021776 | aca-miR-146a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0021745 | aca-miR-132-5p | 2 | _......_ | 7 | 75 |
| MIMAT0020763 | bdi-miR5054 | 8 | __...... | 3 | 75 |
| MIMAT0020643 | mmu-miR-5132-5p | 2 | __...... | 7 | 75 |
| MIMAT0020430 | tcc-miR396d | 8 | _......_ | 3 | 75 |
| MIMAT0019458 | pma-miR-132-5p | 1 | _......_ | 6 | 75 |
| MIMAT0018154 | pab-miR396c | 8 | _......_ | 3 | 75 |
| MIMAT0018153 | pab-miR396b | 8 | _......_ | 3 | 75 |
| MIMAT0016238 | ppy-miR-1909 | 1 | __...... | 6 | 75 |
| MIMAT0016044 | ppy-miR-602 | 8 | ......__ | 3 | 75 |
| MIMAT0014795 | api-miR-3053 | 6 | _......_ | 1 | 75 |
| MIMAT0014769 | api-miR-3033 | 7 | _......_ | 2 | 75 |
| MIMAT0019189 | rlcv-miR-rL1-22-5p | 1 | __...... | 6 | 75 |
| MIMAT0013964 | bhv1-miR-B3 | 6 | _......_ | 1 | 75 |
| MIMAT0012808 | ptr-miR-602 | 8 | ......__ | 3 | 75 |
| MIMAT0011494 | cbr-miR-54b | 3 | ......__ | 8 | 75 |
| MIMAT0006501 | mml-miR-662 | 7 | __...... | 2 | 75 |
| MIMAT0026816 | mml-miR-132-5p | 2 | _......_ | 7 | 75 |
| MIMAT0007727 | gga-miR-1809 | 2 | __...... | 7 | 75 |
| MIMAT0015245 | cin-miR-1473-5p | 7 | __...... | 2 | 75 |
| MIMAT0007124 | oan-miR-1382 | 2 | _......_ | 7 | 75 |
| MIMAT0005227 | smo-miR396 | 8 | _......_ | 3 | 75 |
| MIMAT0026693 | mdo-miR-132-5p | 2 | _......_ | 7 | 75 |
| MIMAT0003901 | ppt-miR1212 | 1 | __...... | 6 | 75 |
| MIMAT0003891 | mmu-miR-770-3p | 1 | __...... | 6 | 75 |
| MIMAT0003325 | hsa-miR-662 | 7 | __...... | 2 | 75 |
| MIMAT0003270 | hsa-miR-602 | 8 | ......__ | 3 | 75 |
| MIMAT0002037 | ptc-miR396g-5p | 8 | _......_ | 3 | 75 |
| MIMAT0002036 | ptc-miR396f | 8 | _......_ | 3 | 75 |
| MIMAT0003403 | dre-miR-132-5p | 2 | _......_ | 7 | 75 |
| MIMAT0001587 | osa-miR438 | 8 | __...... | 3 | 75 |
| MIMAT0017123 | rno-miR-132-5p | 2 | _......_ | 7 | 75 |
| MIMAT0004594 | hsa-miR-132-5p | 2 | _......_ | 7 | 75 |
| MIMAT0000323 | cel-miR-267 | 1 | ......__ | 6 | 75 |
| MIMAT0016984 | mmu-miR-132-5p | 3 | _......_ | 8 | 75 |
