| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cccgttct | 8 | ||
| MIMAT0018174 | mghv-miR-M1-14-5p | 1 | ........ | 8 | 100 |
| MIMAT0035220 | dme-miR-9378-3p | 7 | ......._ | 1 | 87 |
| MIMAT0034581 | eca-miR-9039 | 2 | _....... | 8 | 87 |
| MIMAT0028079 | mmu-miR-7086-3p | 2 | _....... | 8 | 87 |
| MIMAT0022096 | aca-miR-5464-5p | 1 | _....... | 7 | 87 |
| MIMAT0016527 | cin-miR-4019-3p | 1 | ......._ | 7 | 87 |
| MIMAT0016441 | cin-miR-4000h-3p | 2 | _....... | 8 | 87 |
| MIMAT0012711 | hvt-miR-H2 | 1 | ......._ | 7 | 87 |
| MIMAT0005200 | ppt-miR1071-3p | 2 | ......._ | 8 | 87 |
| MIMAT0037001 | ssc-miR-9784-5p | 6 | ......__ | 1 | 75 |
| MIMAT0035774 | tae-miR1137b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0035766 | tae-miR9658-3p | 3 | __...... | 8 | 75 |
| MIMAT0035373 | nve-miR-9417 | 8 | __...... | 3 | 75 |
| MIMAT0034971 | efu-miR-513 | 8 | _......_ | 3 | 75 |
| MIMAT0034328 | cfa-miR-8835 | 3 | __...... | 8 | 75 |
| MIMAT0033037 | ppc-miR-2238k-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032940 | ppc-miR-2238i-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032930 | ppc-miR-2238h-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032894 | ppc-miR-2238g-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032856 | ppc-miR-2238f-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032546 | ssa-miR-22b-5p | 1 | __...... | 6 | 75 |
| MIMAT0030545 | prd-miR-7887-3p | 3 | ......__ | 8 | 75 |
| MIMAT0030155 | bdi-miR7716-3p | 3 | __...... | 8 | 75 |
| MIMAT0029602 | cbr-miR-7595 | 3 | ......__ | 8 | 75 |
| MIMAT0029055 | gga-miR-7450-3p | 1 | ......__ | 6 | 75 |
| MIMAT0025245 | ptc-miR6442 | 8 | _......_ | 3 | 75 |
| MIMAT0024870 | osa-miR5337b | 8 | __...... | 3 | 75 |
| MIMAT0024243 | ggo-miR-337 | 6 | _......_ | 1 | 75 |
| MIMAT0024204 | ggo-miR-887 | 8 | _......_ | 3 | 75 |
| MIMAT0023673 | ame-miR-6049 | 8 | _......_ | 3 | 75 |
| MIMAT0022478 | hsa-miR-5687 | 8 | __...... | 3 | 75 |
| MIMAT0021311 | mtr-miR5274a | 1 | __...... | 6 | 75 |
| MIMAT0020718 | bdi-miR5174a | 3 | _......_ | 8 | 75 |
| MIMAT0019766 | hsa-miR-4681 | 6 | ......__ | 1 | 75 |
| MIMAT0019682 | osa-miR812o-3p | 6 | _......_ | 1 | 75 |
| MIMAT0019668 | osa-miR812m | 8 | _......_ | 3 | 75 |
| MIMAT0019667 | osa-miR812l | 8 | _......_ | 3 | 75 |
| MIMAT0019666 | osa-miR812k | 8 | _......_ | 3 | 75 |
| MIMAT0018263 | gma-miR1520j | 7 | __...... | 2 | 75 |
| MIMAT0018777 | tca-miR-3049-3p | 2 | _......_ | 7 | 75 |
| MIMAT0018662 | tca-miR-3805b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0017879 | rno-miR-3585-3p | 7 | _......_ | 2 | 75 |
| MIMAT0016122 | ppy-miR-887 | 8 | _......_ | 3 | 75 |
| MIMAT0015838 | ppy-miR-337-5p | 6 | _......_ | 1 | 75 |
| MIMAT0015520 | bmo-miR-3333 | 1 | _......_ | 6 | 75 |
| MIMAT0013134 | eca-miR-337-5p | 6 | _......_ | 1 | 75 |
| MIMAT0011951 | bta-miR-2397-5p | 3 | __...... | 8 | 75 |
| MIMAT0011702 | ppc-miR-2237a | 3 | ......__ | 8 | 75 |
| MIMAT0009137 | osa-miR1320-5p | 8 | _......_ | 3 | 75 |
| MIMAT0032070 | dvi-miR-6-3-5p | 8 | __...... | 3 | 75 |
| MIMAT0008330 | ptr-miR-887 | 8 | _......_ | 3 | 75 |
| MIMAT0006526 | mml-miR-887 | 8 | _......_ | 3 | 75 |
| MIMAT0006421 | mml-miR-552 | 6 | ......__ | 1 | 75 |
| MIMAT0006275 | mml-miR-337-5p | 6 | _......_ | 1 | 75 |
| MIMAT0004951 | hsa-miR-887-3p | 8 | _......_ | 3 | 75 |
| MIMAT0031943 | dre-miR-22b-5p | 1 | __...... | 6 | 75 |
| MIMAT0000998 | ebv-miR-BHRF1-3 | 7 | ......__ | 2 | 75 |
| MIMAT0004695 | hsa-miR-337-5p | 6 | _......_ | 1 | 75 |
