| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccctcccc | 8 | ||
| MIMAT0028058 | mmu-miR-7076-5p | 8 | _....... | 2 | 87 |
| MIMAT0028056 | mmu-miR-7075-5p | 8 | _....... | 2 | 87 |
| MIMAT0027964 | mmu-miR-7030-5p | 8 | _....... | 2 | 87 |
| MIMAT0027860 | mmu-miR-6979-5p | 7 | _....... | 1 | 87 |
| MIMAT0027666 | hsa-miR-6883-5p | 8 | ......._ | 2 | 87 |
| MIMAT0027550 | hsa-miR-6825-5p | 8 | _....... | 2 | 87 |
| MIMAT0027498 | hsa-miR-6799-5p | 7 | _....... | 1 | 87 |
| MIMAT0027470 | hsa-miR-6785-5p | 8 | ......._ | 2 | 87 |
| MIMAT0023366 | hco-miR-5910 | 1 | _....... | 7 | 87 |
| MIMAT0019849 | hsa-miR-4728-5p | 8 | ......._ | 2 | 87 |
| MIMAT0019645 | pma-miR-4611 | 7 | ......._ | 1 | 87 |
| MIMAT0017795 | rno-miR-3541 | 2 | ......._ | 8 | 87 |
| MIMAT0011203 | gga-miR-2127 | 8 | ......._ | 2 | 87 |
| MIMAT0007225 | oan-miR-1408 | 8 | _....... | 2 | 87 |
| MIMAT0007182 | oan-miR-802-3p | 8 | ......._ | 2 | 87 |
| MIMAT0004410 | rrv-miR-rR1-4-5p | 8 | _....... | 2 | 87 |
| MIMAT0003900 | ppt-miR1211-5p | 8 | ......._ | 2 | 87 |
| MIMAT0032008 | dre-miR-139-3p | 8 | _....... | 2 | 87 |
| MIMAT0004609 | hsa-miR-149-3p | 8 | ......._ | 2 | 87 |
| MIMAT0023715 | hsa-miR-6090 | 8 | .g...... | 1 | 87 |
| MIMAT0007877 | mmu-miR-1894-5p | 1 | .t...... | 8 | 87 |
| MIMAT0036271 | chi-miR-532-3p | 1 | _......_ | 6 | 75 |
| MIMAT0036131 | chi-miR-30f-3p | 8 | _......_ | 3 | 75 |
| MIMAT0036124 | chi-miR-30b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0035268 | gsa-miR-281-5p | 7 | ......__ | 2 | 75 |
| MIMAT0034948 | efu-miR-9290 | 3 | __...... | 8 | 75 |
| MIMAT0034362 | cfa-miR-8865 | 1 | _......_ | 6 | 75 |
| MIMAT0034154 | gra-miR8771c | 8 | _......_ | 3 | 75 |
| MIMAT0033013 | ppc-miR-8264-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032613 | ssa-miR-30e-3-3p | 8 | __...... | 3 | 75 |
| MIMAT0031773 | hbv-miR-B22-3p | 8 | __...... | 3 | 75 |
| MIMAT0031772 | hbv-miR-B14RC-3p | 7 | ......__ | 2 | 75 |
| MIMAT0031394 | mmu-miR-8093 | 8 | __...... | 3 | 75 |
| MIMAT0030562 | prd-miR-7911c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0030450 | bta-miR-7865 | 8 | _......_ | 3 | 75 |
| MIMAT0030415 | hsa-miR-1273h-5p | 8 | _......_ | 3 | 75 |
| MIMAT0030105 | bdi-miR5174d-5p | 2 | ......__ | 7 | 75 |
| MIMAT0030103 | bdi-miR5174c-5p | 2 | ......__ | 7 | 75 |
| MIMAT0029953 | osa-miR1437b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0029022 | oan-miR-7422b-5p | 7 | __...... | 2 | 75 |
| MIMAT0028748 | mdo-miR-7366-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028656 | mdo-miR-7327-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028551 | mdo-miR-30b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0028438 | mmu-miR-7235-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028178 | dev-miR-D8-5p | 3 | _......_ | 8 | 75 |
| MIMAT0026089 | cme-miR477a | 2 | _......_ | 7 | 75 |
| MIMAT0028124 | hsa-miR-7113-3p | 1 | _......_ | 6 | 75 |
| MIMAT0028119 | hsa-miR-7111-5p | 8 | __...... | 3 | 75 |
| MIMAT0028109 | hsa-miR-7106-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028050 | mmu-miR-7072-5p | 8 | __...... | 3 | 75 |
| MIMAT0027995 | mmu-miR-7045-3p | 2 | __...... | 7 | 75 |
| MIMAT0027936 | mmu-miR-7016-5p | 8 | _......_ | 3 | 75 |
| MIMAT0027874 | mmu-miR-6986-5p | 7 | __...... | 2 | 75 |
| MIMAT0027844 | mmu-miR-6971-5p | 8 | __...... | 3 | 75 |
| MIMAT0027836 | mmu-miR-6967-5p | 8 | _......_ | 3 | 75 |
| MIMAT0027758 | mmu-miR-6929-5p | 7 | _......_ | 2 | 75 |
| MIMAT0027678 | hsa-miR-6889-5p | 8 | __...... | 3 | 75 |
| MIMAT0027675 | hsa-miR-6887-3p | 3 | ......__ | 8 | 75 |
| MIMAT0027640 | hsa-miR-6870-5p | 8 | __...... | 3 | 75 |
| MIMAT0027553 | hsa-miR-6826-3p | 1 | __...... | 6 | 75 |
| MIMAT0027494 | hsa-miR-6797-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027460 | hsa-miR-6780a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0027458 | hsa-miR-6779-5p | 8 | _......_ | 3 | 75 |
| MIMAT0027457 | hsa-miR-6778-3p | 3 | _......_ | 8 | 75 |
| MIMAT0027454 | hsa-miR-6777-5p | 8 | __...... | 3 | 75 |
| MIMAT0027427 | hsa-miR-6763-3p | 1 | __...... | 6 | 75 |
| MIMAT0027426 | hsa-miR-6763-5p | 8 | __...... | 3 | 75 |
| MIMAT0027399 | hsa-miR-6749-3p | 3 | _......_ | 8 | 75 |
| MIMAT0027347 | blv-miR-B4-5p | 8 | _......_ | 3 | 75 |
| MIMAT0025836 | gga-miR-6599-5p | 8 | _......_ | 3 | 75 |
| MIMAT0025742 | gga-miR-6645-5p | 7 | _......_ | 2 | 75 |
| MIMAT0025598 | gga-miR-6547-3p | 3 | ......__ | 8 | 75 |
| MIMAT0025486 | hsa-miR-6515-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027315 | ppe-miR482d-3p | 1 | _......_ | 6 | 75 |
| MIMAT0024571 | bta-miR-149-3p | 8 | _......_ | 3 | 75 |
| MIMAT0023982 | cgr-miR-532-3p | 1 | _......_ | 6 | 75 |
| MIMAT0023781 | cgr-miR-149-3p | 8 | _......_ | 3 | 75 |
| MIMAT0023435 | hco-miR-5940 | 6 | ......__ | 1 | 75 |
| MIMAT0022491 | hsa-miR-5698 | 8 | __...... | 3 | 75 |
| MIMAT0021314 | mtr-miR5276 | 8 | __...... | 3 | 75 |
| MIMAT0019938 | hsa-miR-4779 | 8 | ......__ | 3 | 75 |
| MIMAT0019899 | hsa-miR-4756-5p | 8 | _......_ | 3 | 75 |
| MIMAT0019868 | hsa-miR-4739 | 8 | _......_ | 3 | 75 |
| MIMAT0019838 | hsa-miR-4723-5p | 8 | __...... | 3 | 75 |
| MIMAT0027038 | hsa-miR-1343-5p | 7 | __...... | 2 | 75 |
| MIMAT0019744 | hsa-miR-4667-3p | 2 | ......__ | 7 | 75 |
| MIMAT0019356 | mmu-miR-3971 | 1 | __...... | 6 | 75 |
| MIMAT0019008 | hsa-miR-3689d | 6 | _......_ | 1 | 75 |
| MIMAT0019007 | hsa-miR-3689c | 8 | _......_ | 3 | 75 |
| MIMAT0018475 | csi-miR477a | 2 | _......_ | 7 | 75 |
| MIMAT0018181 | hsa-miR-3689b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0018608 | ame-miR-3739 | 8 | _......_ | 3 | 75 |
| MIMAT0018553 | ame-miR-3776 | 7 | ......__ | 2 | 75 |
| MIMAT0018118 | hsa-miR-3689a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0016921 | hsa-miR-4290 | 3 | ......__ | 8 | 75 |
| MIMAT0017875 | rno-miR-3584-5p | 6 | _......_ | 1 | 75 |
| MIMAT0016139 | ppy-miR-939 | 7 | __...... | 2 | 75 |
| MIMAT0015988 | ppy-miR-532-3p | 1 | _......_ | 6 | 75 |
| MIMAT0015052 | hsa-miR-3175 | 7 | __...... | 2 | 75 |
| MIMAT0015023 | hsa-miR-3150a-3p | 8 | __...... | 3 | 75 |
| MIMAT0014937 | mmu-miR-3103-5p | 6 | ......__ | 1 | 75 |
| MIMAT0013941 | ssc-miR-532-3p | 1 | _......_ | 6 | 75 |
| MIMAT0013236 | eca-miR-532-3p | 1 | _......_ | 6 | 75 |
| MIMAT0011947 | bta-miR-2394 | 3 | __...... | 8 | 75 |
| MIMAT0011930 | bta-miR-2382-5p | 7 | __...... | 2 | 75 |
| MIMAT0011878 | bta-miR-2343 | 8 | __...... | 3 | 75 |
| MIMAT0011839 | bta-miR-1343-5p | 7 | __...... | 2 | 75 |
| MIMAT0011735 | ppc-miR-2247 | 2 | __...... | 7 | 75 |
| MIMAT0011161 | hsa-miR-2116-3p | 1 | _......_ | 6 | 75 |
| MIMAT0009459 | mmu-miR-1982-5p | 8 | _......_ | 3 | 75 |
| MIMAT0009408 | mmu-miR-1943-5p | 8 | _......_ | 3 | 75 |
| MIMAT0019105 | tca-miR-14-5p | 7 | __...... | 2 | 75 |
| MIMAT0008346 | ptr-miR-939 | 7 | __...... | 2 | 75 |
| MIMAT0008336 | ptr-miR-920 | 6 | __...... | 1 | 75 |
| MIMAT0008213 | ptr-miR-532 | 1 | _......_ | 6 | 75 |
| MIMAT0007890 | hsa-miR-1914-3p | 6 | ......__ | 1 | 75 |
| MIMAT0015269 | ssc-miR-30b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0006540 | mml-miR-939 | 7 | __...... | 2 | 75 |
| MIMAT0006532 | mml-miR-920 | 6 | __...... | 1 | 75 |
| MIMAT0006464 | mml-miR-612 | 8 | __...... | 3 | 75 |
| MIMAT0006404 | mml-miR-532-3p | 1 | _......_ | 6 | 75 |
| MIMAT0026894 | mml-miR-518c-5p | 7 | ......__ | 2 | 75 |
| MIMAT0026892 | mml-miR-505-5p | 6 | __...... | 1 | 75 |
| MIMAT0026827 | mml-miR-149-3p | 8 | _......_ | 3 | 75 |
| MIMAT0007683 | gga-miR-1773-5p | 8 | __...... | 3 | 75 |
| MIMAT0007481 | gga-miR-1614-3p | 8 | _......_ | 3 | 75 |
| MIMAT0007477 | gga-miR-1611 | 6 | ......__ | 1 | 75 |
| MIMAT0007465 | gga-miR-1599 | 6 | ......__ | 1 | 75 |
| MIMAT0007348 | hsa-miR-1470 | 2 | ......__ | 7 | 75 |
| MIMAT0006015 | pta-miR482d | 2 | _......_ | 7 | 75 |
| MIMAT0007244 | oan-miR-1421y-5p | 7 | ......__ | 2 | 75 |
| MIMAT0007044 | oan-miR-30b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0005952 | hsa-miR-1321 | 8 | _......_ | 3 | 75 |
| MIMAT0032029 | hsa-miR-1249-5p | 7 | ......__ | 2 | 75 |
| MIMAT0005323 | rno-miR-532-3p | 1 | _......_ | 6 | 75 |
| MIMAT0005149 | ppt-miR1039-3p | 6 | __...... | 1 | 75 |
| MIMAT0004982 | hsa-miR-939-5p | 7 | __...... | 2 | 75 |
| MIMAT0004970 | hsa-miR-920 | 6 | __...... | 1 | 75 |
| MIMAT0015238 | kshv-miR-K12-12-3p | 8 | __...... | 3 | 75 |
| MIMAT0015227 | bmo-miR-14-5p | 7 | __...... | 2 | 75 |
| MIMAT0012534 | bta-miR-30b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0014804 | mmu-miR-1249-5p | 7 | ......__ | 2 | 75 |
| MIMAT0004781 | mmu-miR-532-3p | 1 | _......_ | 6 | 75 |
| MIMAT0004780 | hsa-miR-532-3p | 1 | _......_ | 6 | 75 |
| MIMAT0026563 | mml-miR-30b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0004589 | hsa-miR-30b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0016990 | mmu-miR-149-3p | 8 | _......_ | 3 | 75 |
