| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccctcgg | 7 | ||
| MIMAT0013624 | bmo-miR-2756-3p | 2 | ....... | 8 | 100 |
| MIMAT0012541 | mdv2-miR-M19-5p | 2 | ....... | 8 | 100 |
| MIMAT0035508 | bdi-miR9499 | 1 | ......_ | 6 | 85 |
| MIMAT0034625 | eca-miR-9080 | 8 | _...... | 3 | 85 |
| MIMAT0034281 | cfa-miR-8791a | 2 | _...... | 7 | 85 |
| MIMAT0033264 | ppc-miR-8364l-5p | 1 | _...... | 6 | 85 |
| MIMAT0033248 | ppc-miR-8218b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0033121 | ppc-miR-8301-5p | 8 | _...... | 3 | 85 |
| MIMAT0032866 | ppc-miR-8218a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0031385 | aly-miR2111c-3p | 3 | _...... | 8 | 85 |
| MIMAT0031015 | hsa-miR-8088 | 1 | _...... | 6 | 85 |
| MIMAT0029908 | mmu-miR-7689-5p | 6 | _...... | 1 | 85 |
| MIMAT0027491 | hsa-miR-6795-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027377 | hsa-miR-6738-5p | 6 | ......_ | 1 | 85 |
| MIMAT0024566 | cca-miR6118-3p | 8 | _...... | 3 | 85 |
| MIMAT0020199 | dme-miR-4972-5p | 1 | _...... | 6 | 85 |
| MIMAT0018807 | tca-miR-252b-3p | 2 | _...... | 7 | 85 |
| MIMAT0017996 | hsa-miR-3616-3p | 6 | ......_ | 1 | 85 |
| MIMAT0016371 | bra-miR2111b-3p | 3 | _...... | 8 | 85 |
| MIMAT0016369 | bra-miR2111a-3p | 3 | _...... | 8 | 85 |
| MIMAT0017660 | aly-miR2111b-3p | 3 | _...... | 8 | 85 |
| MIMAT0017658 | aly-miR2111a-3p | 3 | _...... | 8 | 85 |
| MIMAT0014869 | mmu-miR-3080-3p | 2 | _...... | 7 | 85 |
| MIMAT0013514 | mtr-miR2680e | 2 | _...... | 7 | 85 |
| MIMAT0013513 | mtr-miR2680d | 2 | _...... | 7 | 85 |
| MIMAT0013512 | mtr-miR2680c | 2 | _...... | 7 | 85 |
| MIMAT0013511 | mtr-miR2680b | 2 | _...... | 7 | 85 |
| MIMAT0013510 | mtr-miR2680a | 2 | _...... | 7 | 85 |
| MIMAT0026928 | mtr-miR2111m-3p | 3 | _...... | 8 | 85 |
| MIMAT0013288 | mtr-miR2111g-3p | 3 | _...... | 8 | 85 |
| MIMAT0011783 | bna-miR2111a-3p | 3 | _...... | 8 | 85 |
| MIMAT0011781 | bna-miR2111b-3p | 3 | _...... | 8 | 85 |
| MIMAT0011153 | ath-miR2111b-3p | 3 | _...... | 8 | 85 |
| MIMAT0011151 | ath-miR2111a-3p | 3 | _...... | 8 | 85 |
| MIMAT0010074 | osa-miR2106 | 6 | _...... | 1 | 85 |
| MIMAT0007425 | gga-miR-1565 | 6 | ......_ | 1 | 85 |
| MIMAT0026758 | oan-miR-1389-5p | 1 | _...... | 6 | 85 |
| MIMAT0007035 | oan-miR-1370 | 8 | _...... | 3 | 85 |
| MIMAT0006917 | oan-miR-1345 | 7 | _...... | 2 | 85 |
| MIMAT0017328 | mmu-miR-1188-3p | 7 | _...... | 2 | 85 |
| MIMAT0004475 | mdv2-miR-M28-3p | 6 | ......_ | 1 | 85 |
