| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccgaacg | 7 | ||
| MIMAT0004755 | hcmv-miR-US25-1-3p | 2 | ....... | 8 | 100 |
| MIMAT0032381 | ssa-miR-148b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0030928 | stu-miR7984d-5p | 3 | ......_ | 8 | 85 |
| MIMAT0030386 | ptc-miR1444e | 1 | _...... | 6 | 85 |
| MIMAT0030385 | ptc-miR1444d | 1 | _...... | 6 | 85 |
| MIMAT0019668 | osa-miR812m | 2 | _...... | 7 | 85 |
| MIMAT0019667 | osa-miR812l | 2 | _...... | 7 | 85 |
| MIMAT0019666 | osa-miR812k | 2 | _...... | 7 | 85 |
| MIMAT0018777 | tca-miR-3049-3p | 8 | _...... | 3 | 85 |
| MIMAT0016389 | gga-miR-3538 | 6 | ......_ | 1 | 85 |
| MIMAT0017778 | esi-miR3462-3p | 6 | ......_ | 1 | 85 |
| MIMAT0015520 | bmo-miR-3333 | 7 | _...... | 2 | 85 |
| MIMAT0012711 | hvt-miR-H2 | 8 | _...... | 3 | 85 |
| MIMAT0005535 | mcmv-miR-m01-2-3p | 6 | _...... | 1 | 85 |
