| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccgagcct | 8 | ||
| MIMAT0028268 | mml-miR-7167-5p | 8 | ........ | 1 | 100 |
| MIMAT0025314 | prv-miR-LLT10b | 1 | ........ | 8 | 100 |
| MIMAT0025313 | prv-miR-LLT10a | 1 | ........ | 8 | 100 |
| MIMAT0025690 | gga-miR-6596-5p | 2 | ......._ | 8 | 87 |
| MIMAT0025022 | hsv1-miR-H26 | 8 | ......._ | 2 | 87 |
| MIMAT0024345 | mml-miR-2114 | 1 | _....... | 7 | 87 |
| MIMAT0024072 | ptr-miR-2114 | 1 | _....... | 7 | 87 |
| MIMAT0023988 | cgr-miR-615-3p | 2 | ......._ | 8 | 87 |
| MIMAT0020595 | ssc-miR-615 | 2 | ......._ | 8 | 87 |
| MIMAT0017808 | rno-miR-3550 | 1 | ......._ | 7 | 87 |
| MIMAT0016057 | ppy-miR-615-3p | 2 | ......._ | 8 | 87 |
| MIMAT0015446 | bmo-miR-3262 | 8 | ......._ | 2 | 87 |
| MIMAT0012977 | eca-miR-615-3p | 2 | ......._ | 8 | 87 |
| MIMAT0011157 | hsa-miR-2114-3p | 1 | _....... | 7 | 87 |
| MIMAT0009952 | bta-miR-1225-3p | 1 | ......._ | 7 | 87 |
| MIMAT0008277 | ptr-miR-615 | 2 | ......._ | 8 | 87 |
| MIMAT0006466 | mml-miR-615-3p | 2 | ......._ | 8 | 87 |
| MIMAT0007524 | gga-miR-1648-5p | 8 | ......._ | 2 | 87 |
| MIMAT0006943 | oan-miR-1351-5p | 1 | ......._ | 7 | 87 |
| MIMAT0003783 | mmu-miR-615-3p | 2 | ......._ | 8 | 87 |
| MIMAT0003283 | hsa-miR-615-3p | 2 | ......._ | 8 | 87 |
| MIMAT0029848 | mmu-miR-7671-5p | 8 | .g...... | 1 | 87 |
| MIMAT0011473 | cbr-miR-235b-5p | 8 | .a...... | 1 | 87 |
| MIMAT0006581 | vvi-miR845c | 8 | .a...... | 1 | 87 |
| MIMAT0003831 | bta-miR-423-3p | 8 | ......t. | 1 | 87 |
| MIMAT0036525 | tch-miR-423-3p | 7 | ......__ | 2 | 75 |
| MIMAT0036221 | chi-miR-423-3p | 7 | ......__ | 2 | 75 |
| MIMAT0035692 | bra-miR9566-3p | 1 | __...... | 6 | 75 |
| MIMAT0035195 | efu-miR-9368 | 2 | ......__ | 7 | 75 |
| MIMAT0034764 | eca-miR-9183 | 8 | _......_ | 3 | 75 |
| MIMAT0034384 | cfa-miR-8882 | 2 | ......__ | 7 | 75 |
| MIMAT0034077 | gra-miR8696 | 6 | __...... | 1 | 75 |
| MIMAT0033875 | atr-miR8588 | 1 | ......__ | 6 | 75 |
| MIMAT0033821 | bta-miR-8550 | 7 | __...... | 2 | 75 |
| MIMAT0033178 | ppc-miR-8319-5p | 8 | __...... | 3 | 75 |
| MIMAT0033158 | ppc-miR-8364c-3p | 3 | __...... | 8 | 75 |
| MIMAT0032843 | cel-miR-8211-3p | 8 | _......_ | 3 | 75 |
| MIMAT0031691 | bbe-miR-4867-3p | 3 | _......_ | 8 | 75 |
| MIMAT0031467 | ppe-miR171d-3p | 1 | _......_ | 6 | 75 |
| MIMAT0030975 | stu-miR8049-5p | 8 | __...... | 3 | 75 |
| MIMAT0030188 | bdi-miR7728-5p | 7 | ......__ | 2 | 75 |
| MIMAT0029899 | mmu-miR-7686-3p | 8 | ......__ | 3 | 75 |
| MIMAT0029097 | gga-miR-7471-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028985 | oan-miR-7418-3p | 1 | ......__ | 6 | 75 |
| MIMAT0028823 | mdo-miR-7383-3p | 8 | __...... | 3 | 75 |
| MIMAT0028820 | mdo-miR-7382-5p | 8 | __...... | 3 | 75 |
| MIMAT0028658 | mdo-miR-7328-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028321 | mml-miR-7184-3p | 2 | __...... | 7 | 75 |
| MIMAT0028067 | mmu-miR-7080-3p | 7 | __...... | 2 | 75 |
| MIMAT0028047 | mmu-miR-7070-3p | 7 | __...... | 2 | 75 |
| MIMAT0027737 | mmu-miR-6918-3p | 2 | __...... | 7 | 75 |
| MIMAT0027547 | hsa-miR-6823-3p | 2 | __...... | 7 | 75 |
| MIMAT0027545 | hsa-miR-6822-3p | 6 | __...... | 1 | 75 |
| MIMAT0025866 | blv-miR-B5-3p | 3 | _......_ | 8 | 75 |
| MIMAT0025498 | han-miR160a | 7 | ......__ | 2 | 75 |
| MIMAT0025075 | rno-miR-6334 | 8 | __...... | 3 | 75 |
| MIMAT0027305 | ppe-miR6276 | 8 | __...... | 3 | 75 |
| MIMAT0024368 | ppy-miR-3155a | 7 | __...... | 2 | 75 |
| MIMAT0024200 | ggo-miR-484 | 8 | __...... | 3 | 75 |
| MIMAT0023966 | cgr-miR-484 | 8 | __...... | 3 | 75 |
| MIMAT0023957 | cgr-miR-423-3p | 7 | ......__ | 2 | 75 |
| MIMAT0023234 | gma-miR171s | 1 | _......_ | 6 | 75 |
| MIMAT0023229 | gma-miR171r | 1 | _......_ | 6 | 75 |
| MIMAT0023132 | mtr-miR171g | 1 | _......_ | 6 | 75 |
| MIMAT0023034 | tur-miR-276-5p | 7 | ......__ | 2 | 75 |
| MIMAT0022117 | osa-miR5484 | 3 | ......__ | 8 | 75 |
| MIMAT0021269 | mtr-miR171h | 1 | _......_ | 6 | 75 |
| MIMAT0020140 | cel-miR-4934 | 3 | ......__ | 8 | 75 |
| MIMAT0020103 | bfl-miR-4867 | 3 | _......_ | 8 | 75 |
| MIMAT0019952 | hsa-miR-2467-5p | 8 | __...... | 3 | 75 |
| MIMAT0019643 | pma-miR-4609 | 8 | ......__ | 3 | 75 |
| MIMAT0019614 | pma-miR-4581 | 6 | ......__ | 1 | 75 |
| MIMAT0019012 | hsa-miR-3155b | 8 | __...... | 3 | 75 |
| MIMAT0018455 | csi-miR171b | 1 | _......_ | 6 | 75 |
| MIMAT0018191 | hsa-miR-3917 | 6 | ......__ | 1 | 75 |
| MIMAT0018864 | tca-miR-980-5p | 7 | _......_ | 2 | 75 |
| MIMAT0017855 | rno-miR-1188-3p | 8 | __...... | 3 | 75 |
| MIMAT0017796 | rno-miR-3542 | 7 | __...... | 2 | 75 |
| MIMAT0015901 | ppy-miR-484 | 8 | __...... | 3 | 75 |
| MIMAT0015883 | ppy-miR-423-3p | 7 | ......__ | 2 | 75 |
| MIMAT0017741 | ath-miR841b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0017591 | aly-miR771-5p | 2 | __...... | 7 | 75 |
| MIMAT0015029 | hsa-miR-3155a | 8 | __...... | 3 | 75 |
| MIMAT0014930 | mmu-miR-344g-3p | 7 | __...... | 2 | 75 |
| MIMAT0014867 | mmu-miR-3079-3p | 7 | __...... | 2 | 75 |
| MIMAT0013881 | ssc-miR-423-3p | 7 | ......__ | 2 | 75 |
| MIMAT0013862 | bta-miR-2904 | 3 | __...... | 8 | 75 |
| MIMAT0013040 | eca-miR-423-3p | 7 | ......__ | 2 | 75 |
| MIMAT0013648 | bmo-miR-375-5p | 3 | ......__ | 8 | 75 |
| MIMAT0013583 | cte-miR-2714 | 3 | _......_ | 8 | 75 |
| MIMAT0011919 | bta-miR-2373-3p | 1 | _......_ | 6 | 75 |
| MIMAT0011568 | crm-miR-72-3p | 7 | ......__ | 2 | 75 |
| MIMAT0009606 | nve-miR-100-3p | 8 | __...... | 3 | 75 |
| MIMAT0008158 | ptr-miR-484 | 8 | __...... | 3 | 75 |
| MIMAT0008142 | ptr-miR-423 | 7 | ......__ | 2 | 75 |
| MIMAT0006341 | mml-miR-484 | 8 | __...... | 3 | 75 |
| MIMAT0006322 | mml-miR-423-3p | 7 | ......__ | 2 | 75 |
| MIMAT0007442 | gga-miR-1581 | 1 | _......_ | 6 | 75 |
| MIMAT0007363 | gma-miR171b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0005996 | ptc-miR171j | 1 | _......_ | 6 | 75 |
| MIMAT0005995 | ptc-miR171m | 1 | _......_ | 6 | 75 |
| MIMAT0005994 | ptc-miR171l-3p | 1 | _......_ | 6 | 75 |
| MIMAT0007026 | oan-miR-1363-3p | 3 | _......_ | 8 | 75 |
| MIMAT0005319 | rno-miR-484 | 8 | __...... | 3 | 75 |
| MIMAT0005313 | rno-miR-423-3p | 7 | ......__ | 2 | 75 |
| MIMAT0005211 | ppt-miR1079-5p | 3 | ......__ | 8 | 75 |
| MIMAT0004263 | ath-miR841a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0012101 | sme-miR-13-5p | 1 | __...... | 6 | 75 |
| MIMAT0003930 | ath-miR771 | 2 | __...... | 7 | 75 |
| MIMAT0003535 | bta-miR-484 | 8 | __...... | 3 | 75 |
| MIMAT0017256 | mmu-miR-700-5p | 8 | __...... | 3 | 75 |
| MIMAT0003454 | mmu-miR-423-3p | 7 | ......__ | 2 | 75 |
| MIMAT0003127 | mmu-miR-484 | 8 | __...... | 3 | 75 |
| MIMAT0002174 | hsa-miR-484 | 8 | __...... | 3 | 75 |
| MIMAT0001340 | hsa-miR-423-3p | 7 | ......__ | 2 | 75 |
| MIMAT0004654 | rno-miR-344a-5p | 8 | __...... | 3 | 75 |
