| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccggaac | 7 | ||
| MIMAT0030490 | prd-miR-7873a-5p | 8 | ....... | 2 | 100 |
| MIMAT0004412 | rrv-miR-rR1-5 | 1 | ....... | 7 | 100 |
| MIMAT0037075 | ssc-miR-9856-3p | 7 | _...... | 2 | 85 |
| MIMAT0034817 | efu-miR-9223f | 6 | ......_ | 1 | 85 |
| MIMAT0033659 | sma-miR-8470-5p | 3 | _...... | 8 | 85 |
| MIMAT0024801 | hvu-miR6178 | 3 | _...... | 8 | 85 |
| MIMAT0023453 | hco-miR-5951 | 7 | _...... | 2 | 85 |
| MIMAT0023282 | osa-miR5810 | 2 | _...... | 7 | 85 |
| MIMAT0021318 | mtr-miR5279 | 1 | _...... | 6 | 85 |
| MIMAT0018256 | gma-miR4361 | 1 | ......_ | 6 | 85 |
| MIMAT0018893 | tca-miR-3895-3p | 1 | _...... | 6 | 85 |
| MIMAT0018567 | ame-miR-3788 | 6 | _...... | 1 | 85 |
| MIMAT0016528 | cin-miR-4018a-5p | 1 | _...... | 6 | 85 |
| MIMAT0016450 | cin-miR-4001c-5p | 1 | _...... | 6 | 85 |
| MIMAT0017749 | esi-miR3466-5p | 6 | ......_ | 1 | 85 |
| MIMAT0012868 | hvt-miR-H15-5p | 2 | _...... | 7 | 85 |
| MIMAT0012332 | dps-miR-2522b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0007388 | gma-miR1526 | 1 | ......_ | 6 | 85 |
| MIMAT0005961 | osa-miR1427 | 3 | _...... | 8 | 85 |
| MIMAT0004832 | ppt-miR1220b | 6 | ......_ | 1 | 85 |
| MIMAT0004831 | ppt-miR1220a | 6 | ......_ | 1 | 85 |
