| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccggagc | 7 | ||
| MIMAT0024877 | osa-miR6254 | 8 | ....... | 2 | 100 |
| MIMAT0016297 | sja-miR-3488 | 7 | ....... | 1 | 100 |
| MIMAT0007957 | ptr-miR-1203 | 2 | ....... | 8 | 100 |
| MIMAT0005866 | hsa-miR-1203 | 2 | ....... | 8 | 100 |
| MIMAT0031711 | bbe-miR-4904-5p | 3 | ......_ | 8 | 85 |
| MIMAT0030702 | prd-miR-7927e-5p | 1 | _...... | 6 | 85 |
| MIMAT0029848 | mmu-miR-7671-5p | 8 | _...... | 3 | 85 |
| MIMAT0028328 | mml-miR-7187-5p | 7 | _...... | 2 | 85 |
| MIMAT0028292 | mml-miR-7176-5p | 3 | ......_ | 8 | 85 |
| MIMAT0025828 | gga-miR-6557-5p | 1 | ......_ | 6 | 85 |
| MIMAT0025691 | gga-miR-6596-3p | 1 | _...... | 6 | 85 |
| MIMAT0025639 | gga-miR-6567-5p | 7 | _...... | 2 | 85 |
| MIMAT0024592 | bta-miR-6121-5p | 2 | _...... | 7 | 85 |
| MIMAT0026460 | hhv6b-miR-Ro6-3-5p | 3 | _...... | 8 | 85 |
| MIMAT0020499 | bfl-miR-4904-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020094 | bfl-miR-4856b-3p | 1 | _...... | 6 | 85 |
| MIMAT0020076 | spu-miR-4853 | 8 | _...... | 3 | 85 |
| MIMAT0019032 | hsa-miR-4497 | 6 | ......_ | 1 | 85 |
| MIMAT0015935 | ppy-miR-510 | 8 | ......_ | 3 | 85 |
| MIMAT0017749 | esi-miR3466-5p | 3 | ......_ | 8 | 85 |
| MIMAT0014707 | hsv2-miR-H24 | 6 | ......_ | 1 | 85 |
| MIMAT0014486 | tgu-miR-2976 | 2 | _...... | 7 | 85 |
| MIMAT0012416 | dps-miR-2573-5p | 1 | _...... | 6 | 85 |
| MIMAT0009829 | nve-miR-2051-3p | 3 | ......_ | 8 | 85 |
| MIMAT0015290 | bmo-miR-9b-3p | 2 | _...... | 7 | 85 |
| MIMAT0007673 | gga-miR-1765 | 1 | _...... | 6 | 85 |
| MIMAT0005783 | pbi-miR-510 | 8 | ......_ | 3 | 85 |
| MIMAT0005766 | mml-miR-510-5p | 8 | ......_ | 3 | 85 |
| MIMAT0005757 | ssy-miR-510 | 8 | ......_ | 3 | 85 |
| MIMAT0019084 | rlcv-miR-rL1-1-3p | 6 | ......_ | 1 | 85 |
